| Num Enr Orgs (#Enr) | >= | 1 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10766 (secY, b3300) -> SecY EG10360 (fusA, b3340) -> elongation factor G | |||||
| Candidate 0003 | 1.000 | 240 | 1.000 | 28 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 | |
| Candidate 0002 | 1.000 | 247 | 1.000 | 29 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 | |
| Candidate 0001 | 1.000 | 261 | 1.000 | 32 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 | |
| Candidate 0000 | 1.000 | 281 | 0.951 | 41 | Additional genes in candidate EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 002 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G366 (flgJ, b1081) -> FlgJ G365 (flgI, b1080) -> flagellar P-ring protein FlgI G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0009 | 0.999 | 130 | 1.000 | 24 | Additional genes in candidate EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0010 | 0.999 | 118 | 1.000 | 24 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0011 | 0.999 | 120 | 1.000 | 23 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0008 | 0.999 | 132 | 0.960 | 25 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0006 | 0.999 | 144 | 0.962 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0005 | 0.999 | 165 | 0.846 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0004 | 0.999 | 154 | 0.963 | 27 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ | |
| Candidate 0007 | 0.999 | 145 | 0.962 | 26 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ |
| Group 003 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7301 (hyfD, b2484) -> hydrogenase 4, component D EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0015 | 1.000 | 178 | 0.571 | 21 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E | |
| Candidate 0014 | 1.000 | 179 | 0.571 | 21 | Additional genes in candidate G7303 (hyfF, b2486) -> hydrogenase 4, component F |
| Group 004 | Candidate 0017 | 1.000 | 199 | 1.000 | 21 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 005 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF G7340 (yphD, b2546) -> YphD EG12520 (ytfT, b4230) -> YtfT EG12518 (ytfR, b4228 (obsolete)) -> YtfR EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG11959 (alsA, b4087) -> AlsA EG11958 (alsC, b4086) -> AlsC EG10817 (rbsD, b3748) -> ribose pyranase EG10816 (rbsC, b3750) -> RbsC EG10815 (rbsB, b3751) -> RbsB EG10814 (rbsA, b3749) -> RbsA EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) | |||||
| Candidate 0013 | 0.999 | 79 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH EG20252 (xylF, b3566) -> XylF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC | |
| Candidate 0012 | 0.999 | 77 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7341 (yphE, b2547) -> YphE | |
| Candidate 0016 | 0.999 | 70 | 0.048 | 21 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G6802 (lsrD, b1515) -> LsrD G7341 (yphE, b2547) -> YphE | |
| Candidate 0018 | 0.999 | 70 | 0.150 | 20 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG12275 (xylG, b3567) -> XylG G6800 (lsrA, b1513) -> LsrA G7341 (yphE, b2547) -> YphE | |
| Candidate 0036 | 0.999 | 50 | 0.250 | 16 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG20252 (xylF, b3566) -> XylF G6515 (torT, b0994) -> TorT-TMAO | |
| Candidate 0033 | 0.999 | 51 | 0.235 | 17 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase G6515 (torT, b0994) -> TorT-TMAO G7341 (yphE, b2547) -> YphE |
| Group 006 | Genes common to all candidates in group EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10455 (hlpA, b0178) -> periplasmic chaperone EG10570 (map, b0168) -> methionine aminopeptidase EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase G6093 (bamA, bamA) -> BamA | |||||
| Candidate 0024 | 1.000 | 146 | 1.000 | 18 | Additional genes in candidate EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ | |
| Candidate 0023 | 1.000 | 131 | 0.944 | 18 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0047 | 1.000 | 70 | 1.000 | 14 | Additional genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit |
| Group 007 | Genes common to all candidates in group EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0035 | 0.999 | 127 | 1.000 | 16 | Additional genes in candidate EG10151 (cheZ, b1881) -> CheZ EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |
| Candidate 0031 | 0.999 | 148 | 1.000 | 17 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0032 | 0.999 | 137 | 1.000 | 17 | Additional genes in candidate EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10151 (cheZ, b1881) -> CheZ |
| Group 008 | Genes common to all candidates in group EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase | |||||
| Candidate 0021 | 1.000 | 117 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0020 | 1.000 | 97 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0022 | 1.000 | 110 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG11086 (ftsL, b0083) -> essential cell division protein FtsL | |
| Candidate 0030 | 1.000 | 104 | 1.000 | 17 | Additional genes in candidate EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0029 | 0.999 | 90 | 1.000 | 17 | Additional genes in candidate EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0038 | 1.000 | 136 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0049 | 0.999 | 66 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0048 | 0.999 | 51 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0040 | 1.000 | 80 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0039 | 1.000 | 65 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0076 | 1.000 | 41 | 0.833 | 12 | Additional genes in candidate EG10213 (ddlA, b0381) -> D-alanine-D-alanine ligase A EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW |
| Group 009 | Genes common to all candidates in group EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7664 (lptC, b3199) -> LptC G7665 (lptA, b3200) -> LptA | |||||
| Candidate 0027 | 0.999 | 51 | 0.882 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr | |
| Candidate 0026 | 0.999 | 38 | 1.000 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12802 (yrbG, b3196) -> YrbG CaCA transporter | |
| Candidate 0061 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG11652 (degS, b3235) -> DegS serine endoprotease |
| Group 010 | Genes common to all candidates in group EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit | |||||
| Candidate 0080 | 1.000 | 28 | 1.000 | 12 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10106 (atpI, b3739) -> AtpI EG11198 (glmU, b3730) -> GlmU | |
| Candidate 0107 | 0.999 | 7 | 1.000 | 11 | Additional genes in candidate EG10106 (atpI, b3739) -> AtpI EG11199 (mioC, b3742) -> flavoprotein involved in biotin synthesis | |
| Candidate 0025 | 0.999 | 154 | 1.000 | 18 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10382 (glmS, b3729) -> GlmS EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11198 (glmU, b3730) -> GlmU | |
| Candidate 0019 | 0.999 | 152 | 1.000 | 19 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11198 (glmU, b3730) -> GlmU |
| Group 011 | Genes common to all candidates in group EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12606 (fabF, b1095) -> FabF EG12302 (tmk, b1098) -> dTMP kinase EG11500 (holB, b1099) -> DNA polymerase III, δ prime subunit EG11494 (yceG, b1097) -> predicted aminodeoxychorismate lyase EG11493 (pabC, b1096) -> pabC EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11119 (yceD, b1088) -> conserved protein EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG10859 (rne, b1084) -> RNase E | |||||
| Candidate 0041 | 0.999 | 61 | 1.000 | 14 | Additional genes in candidate EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase | |
| Candidate 0037 | 0.999 | 69 | 1.000 | 15 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG11438 (yceF, b1087) -> predicted protein |
| Group 012 | Genes common to all candidates in group EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0045 | 0.999 | 94 | 1.000 | 14 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0079 | 0.999 | 103 | 1.000 | 12 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0059 | 0.999 | 79 | 1.000 | 13 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0034 | 0.999 | 125 | 0.937 | 16 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0028 | 0.999 | 140 | 0.765 | 17 | Additional genes in candidate EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 013 | Candidate 0044 | 1.000 | 81 | 0.786 | 14 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10942 (selB, b3590) -> selenocysteyl-tRNA-specific translation elongation factor EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 014 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6779 (ddpC, b1485) -> YddQ G6432 (gsiD, b0832) -> GsiD G6431 (gsiC, b0831) -> GsiC G2001 (sapB, b1293) -> SapB G2000 (sapC, b1292) -> SapC EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0056 | 0.999 | 59 | 0.077 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB | |
| Candidate 0055 | 0.999 | 58 | 0.000 | 13 | Additional genes in candidate G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS | |
| Candidate 0057 | 0.999 | 59 | 0.154 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G2002 (sapA, b1294) -> SapA | |
| Candidate 0058 | 0.999 | 62 | 0.000 | 13 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS |
| Group 015 | Genes common to all candidates in group G6093 (bamA, bamA) -> BamA EG11647 (accA, b0185) -> acetyl-CoA carboxyltransferase, α subunit EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11284 (fabZ, b0180) -> FabZ EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10570 (map, b0168) -> methionine aminopeptidase EG10546 (lpxB, b0182) -> LpxB EG10545 (lpxA, b0181) -> LpxA EG10455 (hlpA, b0178) -> periplasmic chaperone EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit | |||||
| Candidate 0046 | 0.999 | 92 | 1.000 | 14 | Additional genes in candidate EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG12715 (dxr, b0173) -> Dxr | |
| Candidate 0075 | 0.999 | 58 | 1.000 | 12 | Additional genes in candidate G6096 (tilS, b0188) -> tRNAIle-lysidine synthetase |
| Group 016 | Genes common to all candidates in group EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit | |||||
| Candidate 0043 | 0.999 | 98 | 0.429 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0042 | 1.000 | 104 | 0.286 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0173 | 0.999 | 29 | 0.556 | 9 | Additional genes in candidate EG11803 (hybE, b2992) -> hydrogenase 2-specific chaperone |
| Group 017 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0053 | 1.000 | 82 | 0.231 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0052 | 1.000 | 89 | 0.385 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0070 | 1.000 | 59 | 0.083 | 12 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0121 | 1.000 | 44 | 0.100 | 10 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E |
| Group 018 | Candidate 0060 | 1.000 | 45 | 0.667 | 12 | Genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G357 (flgA, b1072) -> flagellar biosynthesis; assembly of basal-body periplasmic P ring G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ |
| Group 019 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10815 (rbsB, b3751) -> RbsB EG10816 (rbsC, b3750) -> RbsC EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG11958 (alsC, b4086) -> AlsC EG12028 (yeiI, b2160) -> predicted kinase | |||||
| Candidate 0051 | 0.999 | 42 | 0.231 | 13 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0050 | 0.999 | 36 | 0.231 | 13 | Additional genes in candidate EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0064 | 0.999 | 30 | 0.333 | 12 | Additional genes in candidate EG12517 (ytfQ, b4227) -> YtfQ G6515 (torT, b0994) -> TorT-TMAO G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0065 | 0.999 | 28 | 0.500 | 12 | Additional genes in candidate EG10819 (rbsR, b3753) -> RbsR transcriptional repressor G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0112 | 0.999 | 14 | 0.500 | 10 | Additional genes in candidate EG11848 (yihV, b3883) -> predicted sugar kinase G6959 (ydjH, b1772) -> predicted kinase |
| Group 020 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF EG12520 (ytfT, b4230) -> YtfT EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG12276 (xylH, b3568) -> XylH EG12275 (xylG, b3567) -> XylG EG11959 (alsA, b4087) -> AlsA EG10814 (rbsA, b3749) -> RbsA EG10594 (mglC, b2148) -> MglC EG10593 (mglB, b2150) -> MglB EG10592 (mglA, b2149) -> MglA | |||||
| Candidate 0069 | 0.999 | 37 | 0.417 | 12 | Additional genes in candidate EG20252 (xylF, b3566) -> XylF | |
| Candidate 0068 | 0.999 | 35 | 0.333 | 12 | Additional genes in candidate G7341 (yphE, b2547) -> YphE |
| Group 021 | Genes common to all candidates in group EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI G6752 (ydcT, b1441) -> YdcT G6753 (ydcU, b1442) -> YdcU | |||||
| Candidate 0067 | 1.000 | 44 | 0.000 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG11629 (potF, b0854) -> PotF G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0066 | 1.000 | 51 | 0.083 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0113 | 1.000 | 22 | 0.100 | 10 | Additional genes in candidate EG11572 (thiQ, b0066) -> SfuC EG11629 (potF, b0854) -> PotF |
| Group 022 | Genes common to all candidates in group EG11592 (ybeD, b0631) -> conserved protein EG11591 (lipB, b0630) -> lipoyl-protein ligase EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11255 (ybeB, b0637) -> predicted protein EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 | |||||
| Candidate 0101 | 0.999 | 28 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0100 | 0.999 | 20 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0099 | 0.999 | 26 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0098 | 0.999 | 19 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0078 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG12851 (ybeL, b0643) -> conserved protein | |
| Candidate 0077 | 0.999 | 6 | 1.000 | 12 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG12851 (ybeL, b0643) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase |
| Group 023 | Candidate 0086 | 1.000 | 141 | 0.909 | 11 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12095 (secG, b3175) -> SecG |
| Group 024 | Candidate 0106 | 1.000 | 46 | 0.818 | 11 | Genes in candidate EG10123 (birA, birA) -> bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 025 | Genes common to all candidates in group G7665 (lptA, b3200) -> LptA G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11680 (lptB, b3201) -> LptB EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor | |||||
| Candidate 0118 | 0.999 | 5 | 1.000 | 10 | Additional genes in candidate EG10610 (mreD, b3249) -> MreD | |
| Candidate 0063 | 1.000 | 20 | 0.667 | 12 | Additional genes in candidate EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11151 (raiA, b2597) -> stationary phase translation inhibitor and ribosome stability factor EG11864 (frvA, b3900) -> FrvA |
| Group 026 | Candidate 0082 | 0.999 | 1 | 1.000 | 11 | Genes in candidate EG10776 (pspA, b1304) -> regulatory protein for the phage shock protein operon EG10777 (pspB, b1305) -> stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair EG10778 (pspC, b1306) -> PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12344 (pspF, b1303) -> PspF transcriptional dual regulator EG12870 (ycjF, b1322) -> conserved inner membrane protein G2000 (sapC, b1292) -> SapC G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA G6659 (ycjX, b1321) -> conserved protein |
| Group 027 | Genes common to all candidates in group EG10415 (greA, b3181) -> transcription elongation factor GreA EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12095 (secG, b3175) -> SecG EG12794 (yhbY, b3180) -> predicted RNA-binding protein | |||||
| Candidate 0089 | 0.999 | 59 | 1.000 | 11 | Additional genes in candidate EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH | |
| Candidate 0090 | 0.999 | 55 | 1.000 | 11 | Additional genes in candidate EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase | |
| Candidate 0088 | 0.999 | 52 | 1.000 | 11 | Additional genes in candidate EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG50011 (folP, b3177) -> FolP |
| Group 028 | Candidate 0081 | 0.999 | 11 | 0.000 | 11 | Genes in candidate G6134 (insH-1, b0259) -> IS5 transposase and trans-activator G6308 (insH-2, b0552) -> IS5 transposase and trans-activator G6360 (insH-3, b0656) -> IS5 transposase and trans-activator G6667 (insH-4, b1331) -> IS5 transposase and trans-activator G6693 (insH-5, b1370) -> IS5 transposase and trans-activator G7074 (insH-6, b1994) -> IS5 transposase and trans-activator G7092 (insH-7, b2030) -> IS5 transposase and trans-activator G7150 (insH-8, b2192) -> IS5 transposase and trans-activator G7548 (insH-9, b2982) -> IS5 transposase and trans-activator G7672 (insH-10, b3218) -> IS5 transposase and trans-activator G7769 (insH-11, b3505) -> IS5 transposase and trans-activator |
| Group 029 | Genes common to all candidates in group EG10723 (phnN, b4094) -> ribose 1,5-bisphosphokinase EG10722 (phnM, b4095) -> ATP-binding component of phosphonate transport EG10720 (phnK, b4097) -> PhnK EG10719 (phnJ, b4098) -> carbon-phosphorous lyase complex subunit EG10718 (phnI, b4099) -> carbon-phosphorus lyase complex subunit EG10717 (phnH, b4100) -> carbon-phosphorous lyase complex subunit EG10716 (phnG, b4101) -> carbon-phosphorous lyase complex subunit EG10715 (phnF, b4102) -> PhnF transcriptional regulator EG10714 (phnD, b4105) -> PhnD EG10713 (phnC, b4106) -> PhnC | |||||
| Candidate 0084 | 0.999 | 16 | 1.000 | 11 | Additional genes in candidate EG10721 (phnL, b4096) -> PhnL | |
| Candidate 0083 | 0.999 | 15 | 1.000 | 11 | Additional genes in candidate EG11283 (phnE, b4104) -> PhnE |
| Group 030 | Genes common to all candidates in group G7842 (orn, b4162) -> oligoribonuclease monomer EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11281 (mutL, b4170) -> MutL EG10595 (miaA, b4171) -> tRNA(i6A37) synthase EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10436 (hflK, b4174) -> regulator of FtsH protease EG10435 (hflC, b4175) -> regulator of FtsH protease | |||||
| Candidate 0087 | 0.999 | 20 | 1.000 | 11 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme EG11758 (yjeF, b4167) -> predicted carbohydrate kinase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0054 | 0.999 | 50 | 0.769 | 13 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG11758 (yjeF, b4167) -> predicted carbohydrate kinase EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0123 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0122 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A |
| Group 031 | Candidate 0095 | 0.999 | 13 | 0.818 | 11 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase |
| Group 032 | Genes common to all candidates in group G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG11328 (fdx, b2525) -> oxidized ferredoxin | |||||
| Candidate 0108 | 0.999 | 25 | 1.000 | 11 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10983 (suhB, b2533) -> inositol monophosphatase EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0062 | 0.999 | 42 | 0.667 | 12 | Additional genes in candidate EG10983 (suhB, b2533) -> inositol monophosphatase EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12309 (yjtD, b4403) -> predicted rRNA methyltransferase G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0156 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10650 (ndk, b2518) -> Ndk G7321 (yfgM, b2513) -> conserved protein | |
| Candidate 0155 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7321 (yfgM, b2513) -> conserved protein |
| Group 033 | Genes common to all candidates in group EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11908 (frwC, b3949) -> FrwC EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS | |||||
| Candidate 0071 | 1.000 | 46 | 0.000 | 12 | Additional genes in candidate EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11864 (frvA, b3900) -> FrvA EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS | |
| Candidate 0091 | 1.000 | 48 | 0.091 | 11 | Additional genes in candidate EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS G7990 (fruB, b2169) -> FruB | |
| Candidate 0176 | 0.999 | 43 | 0.000 | 9 | Additional genes in candidate EG10615 (mtlA, b3599) -> MtlA G7990 (fruB, b2169) -> FruB |
| Group 034 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G2002 (sapA, b1294) -> SapA G2001 (sapB, b1293) -> SapB EG12627 (dppD, b3541) -> DppD EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0097 | 1.000 | 33 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G2000 (sapC, b1292) -> SapC | |
| Candidate 0096 | 0.999 | 35 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO | |
| Candidate 0144 | 0.999 | 35 | 0.200 | 10 | Additional genes in candidate EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0145 | 1.000 | 25 | 0.300 | 10 | Additional genes in candidate EG12305 (sapF, b1290) -> SapF G2000 (sapC, b1292) -> SapC G6430 (gsiB, b0830) -> GsiB |
| Group 035 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10320 (flhD, b1892) -> FlhD EG10319 (flhC, b1891) -> FlhC EG10151 (cheZ, b1881) -> CheZ EG10150 (cheY, b1882) -> CheY-acetylated EG10149 (cheW, b1887) -> CheW EG10147 (cheB, b1883) -> CheB-Pasp EG10146 (cheA, b1888) -> CheA(S) | |||||
| Candidate 0152 | 0.999 | 5 | 1.000 | 10 | Additional genes in candidate EG10602 (motB, b1889) -> MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall | |
| Candidate 0105 | 0.999 | 13 | 1.000 | 11 | Additional genes in candidate EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor |
| Group 036 | Genes common to all candidates in group EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7638 (yraI, b3143) -> predicted pilin chaperone | |||||
| Candidate 0132 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0093 | 0.999 | 3 | 0.000 | 11 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) EG10313 (fimF, b4318) -> fimbrial morphology G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0138 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein | |
| Candidate 0135 | 0.999 | 3 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6795 (ydeT, b1505) -> predicted protein G7585 (yqiG, b3046) -> putative membrane protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein | |
| Candidate 0129 | 0.999 | 3 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0128 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0136 | 0.999 | 3 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0134 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0139 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0137 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0131 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0130 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0074 | 0.999 | 7 | 0.000 | 12 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD EG11988 (yehB, b2109) -> putative outer membrane usher protein EG11989 (yehC, b2110) -> putative fimbrial chaperone EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0073 | 0.999 | 7 | 0.000 | 12 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD EG11988 (yehB, b2109) -> putative outer membrane usher protein EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0092 | 0.999 | 5 | 0.000 | 11 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein |
| Group 037 | Genes common to all candidates in group G6185 (yahF, b0320) -> predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10980 (sucB, b0727) -> SucB EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10932 (sdhB, b0724) -> succinate dehydrogenase iron-sulfur protein EG10931 (sdhA, b0723) -> succinate dehydrogenase flavoprotein | |||||
| Candidate 0072 | 1.000 | 74 | 0.583 | 12 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10402 (gltA, b0720) -> citrate synthase monomer EG10933 (sdhC, b0721) -> succinate dehydrogenase membrane protein EG10934 (sdhD, b0722) -> succinate dehydrogenase membrane protein | |
| Candidate 0208 | 1.000 | 37 | 0.750 | 8 | Additional genes in candidate G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 038 | Candidate 0110 | 1.000 | 22 | 0.600 | 10 | Genes in candidate EG11948 (nrfE, b4074) -> formate-dependent nitrite reductase; possible assembly function EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex EG11950 (nrfG, b4076) -> NrfG EG12052 (ccmH, b2194) -> CcmH EG12053 (ccmG, b2195) -> CcmG EG12054 (ccmF, b2196) -> cytochrome c-type biogenesis protein EG12055 (ccmE, b2197) -> CcmE EG12057 (ccmC, b2199) -> CcmC EG12058 (ccmB, b2200) -> CcmB EG12059 (ccmA, b2201) -> CcmA |
| Group 039 | Candidate 0158 | 1.000 | 13 | 0.100 | 10 | Genes in candidate EG10014 (acrD, b2470) -> AcrD EG10266 (acrE, b3265) -> transmembrane protein affects septum formation and cell membrane permeability EG10267 (acrF, b3266) -> AcrF EG11703 (acrA, b0463) -> AcrA membrane fusion protein EG11704 (acrB, b0462) -> AcrB RND-type permease EG11741 (envR, b3264) -> EnvR DNA binding transcriptional repressor EG12116 (acrR, b0464) -> AcrR transcriptional repressor EG12240 (mdtE, b3513) -> MdtE EG12241 (mdtF, b3514) -> MdtF G6320 (cusC, b0572) -> outer membrane factor of the CusCFBA copper/silver efflux system |
| Group 040 | Genes common to all candidates in group G7348 (rseB, b2571) -> rseB EG12341 (rseA, b2572) -> anti-sigma factor EG11897 (rpoE, b2573) -> RNA polymerase, sigma 24 (sigma E) factor EG10857 (rnc, b2567) -> RNase III EG10832 (recO, b2565) -> protein interacts with RecR and possibly RecF proteins EG10530 (lepB, b2568) -> leader peptidase (signal peptidase I) EG10529 (lepA, b2569) -> elongation factor 4 EG10270 (era, b2566) -> GTP-binding protein | |||||
| Candidate 0146 | 1.000 | 2 | 1.000 | 10 | Additional genes in candidate EG10247 (acpS, b2563) -> AcpS EG10693 (pdxJ, b2564) -> PdxJ | |
| Candidate 0141 | 0.999 | 1 | 1.000 | 10 | Additional genes in candidate EG10631 (nadB, b2574) -> L-aspartate oxidase G7510 (ygfY, b2897) -> conserved protein |
| Group 041 | Genes common to all candidates in group EG10638 (narG, b1224) -> nitrate reductase A, α subunit EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10640 (narI, b1227) -> nitrate reductase A, γ subunit EG10641 (narJ, b1226) -> molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter EG10645 (narW, b1466) -> NarW, probable private chaperone for NarZ nitrate reductase subunit EG10648 (narZ, b1468) -> nitrate reductase Z, α subunit EG12153 (narU, b1469) -> NarU MFS nitrate/nitrite antiporter | |||||
| Candidate 0116 | 1.000 | 19 | 0.000 | 10 | Additional genes in candidate EG10644 (narV, b1465) -> nitrate reductase Z, γ subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit | |
| Candidate 0115 | 0.999 | 9 | 0.200 | 10 | Additional genes in candidate EG10646 (narX, b1222) -> NarX-Phis EG10647 (narY, b1467) -> nitrate reductase Z, β subunit | |
| Candidate 0117 | 0.999 | 8 | 0.400 | 10 | Additional genes in candidate EG10643 (narL, b1221) -> NarL-Phosphorylated transcriptional dual regulator EG10646 (narX, b1222) -> NarX-Phis |
| Group 042 | Candidate 0109 | 0.999 | 9 | 0.000 | 10 | Genes in candidate G6168 (insE-1, b0298) -> IS3 element protein InsE G6169 (insF-1, b0299) -> IS3 element protein InsF G6223 (insF-2, b0372) -> IS3 element protein InsF G6224 (insE-2, b0373) -> IS3 element protein InsE G6296 (insE-3, b0540) -> IS3 element protein InsE G6297 (insF-3, b0541) -> IS3 element protein InsF G6533 (insF-4, b1026) -> IS3 element protein InsF G6534 (insE-4, b1027) -> IS3 element protein InsE G7125 (insE-5, b2088) -> IS3 element protein InsE G7126 (insF-5, b2089) -> IS3 element protein InsF |
| Group 043 | Candidate 0111 | 0.999 | 15 | 0.900 | 10 | Genes in candidate EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG11652 (degS, b3235) -> DegS serine endoprotease EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7682 (degQ, b3234) -> serine endoprotease, periplasmic |
| Group 044 | Candidate 0147 | 0.999 | 5 | 1.000 | 10 | Genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit EG10335 (frr, b0172) -> ribosome recycling factor EG10570 (map, b0168) -> methionine aminopeptidase EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11539 (pyrH, b0171) -> PyrH EG12336 (yaeH, b0163) -> conserved protein EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase |
| Group 045 | Genes common to all candidates in group EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10602 (motB, b1889) -> MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0185 | 0.999 | 14 | 1.000 | 9 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0103 | 0.999 | 34 | 1.000 | 11 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0186 | 0.999 | 33 | 1.000 | 9 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0085 | 0.999 | 85 | 0.727 | 11 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G361 (flgE, b1076) -> flagellar hook protein FlgE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0151 | 0.999 | 53 | 1.000 | 10 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 046 | Genes common to all candidates in group EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7638 (yraI, b3143) -> predicted pilin chaperone | |||||
| Candidate 0126 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0125 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0127 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11989 (yehC, b2110) -> putative fimbrial chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0133 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae EG11989 (yehC, b2110) -> putative fimbrial chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone | |
| Candidate 0178 | 0.999 | 1 | 0.111 | 9 | Additional genes in candidate G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G7586 (yqiH, b3047) -> putative membrane protein |
| Group 047 | Genes common to all candidates in group EG10146 (cheA, b1888) -> CheA(S) EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10150 (cheY, b1882) -> CheY-acetylated EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0188 | 0.999 | 37 | 1.000 | 9 | Additional genes in candidate EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0187 | 0.999 | 38 | 1.000 | 9 | Additional genes in candidate G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0104 | 0.999 | 39 | 1.000 | 11 | Additional genes in candidate EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10151 (cheZ, b1881) -> CheZ EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching |
| Group 048 | Genes common to all candidates in group EG10168 (lnt, b0657) -> apolipoprotein N-acyltransferase EG10532 (leuS, b0642) -> leucyl-tRNA synthetase G6361 (ybeX, b0658) -> predicted ion transport protein G6362 (ybeY, b0659) -> conserved protein involved in translation G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain | |||||
| Candidate 0149 | 0.999 | 1 | 1.000 | 10 | Additional genes in candidate EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG12851 (ybeL, b0643) -> conserved protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB | |
| Candidate 0102 | 0.999 | 2 | 1.000 | 11 | Additional genes in candidate EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG12851 (ybeL, b0643) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0184 | 0.999 | 1 | 1.000 | 9 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11255 (ybeB, b0637) -> predicted protein EG12851 (ybeL, b0643) -> conserved protein G6365 (ubiF, b0662) -> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase | |
| Candidate 0182 | 0.999 | 9 | 0.889 | 9 | Additional genes in candidate EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11734 (phoH, b1020) -> ATP-binding protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0246 | 1.000 | 5 | 0.875 | 8 | Additional genes in candidate EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11734 (phoH, b1020) -> ATP-binding protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 049 | Genes common to all candidates in group EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10370 (ispG, b2515) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase EG10650 (ndk, b2518) -> Ndk EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase G7321 (yfgM, b2513) -> conserved protein G7325 (iscS, b2530) -> cysteine desulfurase monomer G7326 (iscR, b2531) -> IscR transcriptional dual regulator | |||||
| Candidate 0195 | 0.999 | 3 | 1.000 | 9 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0194 | 0.999 | 5 | 1.000 | 9 | Additional genes in candidate EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0157 | 0.999 | 6 | 1.000 | 10 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase G7319 (der, b2511) -> 50S ribosomal subunit stability factor G7320 (bamB, bamB) -> BamB |
| Group 050 | Genes common to all candidates in group EG10353 (fucR, b2805) -> FucR transcriptional activator EG10974 (srlR, b2707) -> GutR transcriptional repressor EG12162 (gatR_2, b2090) -> GatR_2 G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7630 (agaR, b3131) -> AgaR transcriptional repressor G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism | |||||
| Candidate 0175 | 0.999 | 12 | 0.000 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator | |
| Candidate 0174 | 0.999 | 10 | 0.111 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G7854 (ulaR, b4191) -> UlaR transcriptional repressor | |
| Candidate 0124 | 0.999 | 19 | 0.000 | 10 | Additional genes in candidate EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator |
| Group 051 | Genes common to all candidates in group EG10258 (eno, b2779) -> Eno EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer G7424 (ftsB, b2748) -> essential cell division protein FtsB | |||||
| Candidate 0143 | 0.999 | 4 | 0.800 | 10 | Additional genes in candidate EG10510 (rpoS, b2741) -> RNA polymerase, sigma S (sigma 38) factor EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator | |
| Candidate 0142 | 0.999 | 5 | 0.800 | 10 | Additional genes in candidate EG10810 (pyrG, b2780) -> PyrG EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator | |
| Candidate 0243 | 0.999 | 2 | 1.000 | 8 | Additional genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10810 (pyrG, b2780) -> PyrG |
| Group 052 | Genes common to all candidates in group G7421 (ygbN, b2740) -> YgbN Gnt transporter EG12631 (gntU, b3435 (obsolete)) -> GntU gluconate Gnt transporter EG12629 (gntK, b3437) -> GntK EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter EG12548 (yjhF, b4296) -> YjhF Gnt tranporter EG12539 (idnT, b4265) -> L-idonate / 5-ketogluconate / gluconate transporter EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter EG12152 (idnK, b4268) -> D-gluconate kinase, thermosensitive | |||||
| Candidate 0161 | 1.000 | 8 | 0.111 | 9 | Additional genes in candidate EG12630 (gntR, b3438) -> GntR transcriptional repressor | |
| Candidate 0179 | 1.000 | 15 | 0.000 | 9 | Additional genes in candidate EG10250 (dsdX, b2365) -> DsdX Gnt tranporter |
| Group 053 | Candidate 0189 | 1.000 | 13 | 1.000 | 9 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10382 (glmS, b3729) -> GlmS EG11198 (glmU, b3730) -> GlmU G7723 (frlB, b3371) -> fructoselysine 6-phosphate deglycase monomer |
| Group 054 | Candidate 0193 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 055 | Genes common to all candidates in group EG12854 (ybgF, b0742) -> predicted periplasmic protein EG11110 (ybgC, b0736) -> esterase/thioesterase EG11011 (tolR, b0738) -> TolR EG11010 (tolQ, b0737) -> TolQ EG11008 (tolB, b0740) -> TolB EG10684 (pal, b0741) -> Pal | |||||
| Candidate 0241 | 1.000 | 19 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10272 (exbD, b3005) -> ExbD uptake of enterochelin; tonB-dependent uptake of B colicins | |
| Candidate 0240 | 1.000 | 5 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG11007 (tolA, b0739) -> TolA | |
| Candidate 0114 | 1.000 | 43 | 1.000 | 10 | Additional genes in candidate EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair EG11137 (yebC, b1864) -> conserved protein RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase | |
| Candidate 0140 | 1.000 | 45 | 0.900 | 10 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase |
| Group 056 | Candidate 0159 | 0.999 | 1 | 1.000 | 9 | Genes in candidate G7535 (yghD, b2968) -> predicted secretion pathway protein, M-type protein, membrane anchored G7537 (yghF, b2970) -> predicted secretion pathway protein, C-type protein G7703 (gspD, b3325) -> putative protein secretion protein for export G7704 (gspE, b3326) -> putative protein secretion protein for export G7705 (gspF, b3327) -> putative protein secretion protein for export G7706 (gspG, b3328) -> putative protein secretion protein for export G7708 (gspI, b3330) -> putative protein secretion protein for export G7709 (gspJ, b3331) -> putative protein secretion protein for export G7710 (gspK, b3332) -> putative protein secretion protein for export |
| Group 057 | Candidate 0190 | 0.999 | 10 | 1.000 | 9 | Genes in candidate EG10073 (aroA, b0908) -> 3-phosphoshikimate-1-carboxyvinyltransferase EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10441 (ihfB, b0912) -> integration host factor (IHF), β subunit EG10707 (pheA, b2599) -> PheA EG10900 (rpsA, b0911) -> 30S ribosomal subunit protein S1 EG10946 (serC, b0907) -> SerC EG11143 (ubiG, b2232) -> UbiG EG11265 (cmk, b0910) -> cytidylate kinase EG12691 (yciM, b1280) -> conserved protein |
| Group 058 | Genes common to all candidates in group G6781 (ddpA, b1487) -> YddS G6432 (gsiD, b0832) -> GsiD G6430 (gsiB, b0830) -> GsiB EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG12075 (nikA, b3476) -> NikA EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0181 | 0.999 | 17 | 0.111 | 9 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC | |
| Candidate 0180 | 0.999 | 18 | 0.111 | 9 | Additional genes in candidate G2002 (sapA, b1294) -> SapA |
| Group 059 | Candidate 0166 | 0.999 | 14 | 0.111 | 9 | Genes in candidate EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF EG12079 (nikE, b3480) -> NikE EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6778 (ddpD, b1484) -> YddP |
| Group 060 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0120 | 0.999 | 45 | 0.700 | 10 | Additional genes in candidate EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) | |
| Candidate 0217 | 0.999 | 57 | 0.750 | 8 | Additional genes in candidate EG10496 (ilvD, b3771) -> IlvD EG11577 (leuB, b0073) -> LeuB | |
| Candidate 0172 | 1.000 | 74 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10496 (ilvD, b3771) -> IlvD G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0170 | 1.000 | 58 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0218 | 1.000 | 45 | 0.750 | 8 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) |
| Group 061 | Genes common to all candidates in group G6141 (yagF, b0269) -> CP4-6 prophage; predicted dehydratase EG11583 (gcl, b0507) -> Gcl EG10500 (ilvI, b0077) -> IlvI EG10499 (ilvH, brnP) -> IlvH EG10496 (ilvD, b3771) -> IlvD EG10494 (ilvB, b3671) -> IlvB | |||||
| Candidate 0168 | 0.999 | 69 | 0.556 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0171 | 0.999 | 70 | 0.778 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0169 | 0.999 | 77 | 0.667 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11577 (leuB, b0073) -> LeuB G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0244 | 0.999 | 66 | 0.625 | 8 | Additional genes in candidate EG10257 (edd, b1851) -> phosphogluconate dehydratase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase |
| Group 062 | Genes common to all candidates in group EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G6922 (ydiS, b1699) -> putative flavoprotein G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain | |||||
| Candidate 0163 | 0.999 | 26 | 0.000 | 9 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin | |
| Candidate 0162 | 0.999 | 27 | 0.111 | 9 | Additional genes in candidate EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin G7433 (ygcO, b2767) -> predicted 4Fe-4S cluster-containing protein | |
| Candidate 0203 | 1.000 | 25 | 0.000 | 8 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G7435 (ygcQ, b2769) -> predicted flavoprotein |
| Group 063 | Genes common to all candidates in group EG10004 (dfp, b3639) -> Dfp EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |||||
| Candidate 0197 | 0.999 | 20 | 0.667 | 9 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase | |
| Candidate 0196 | 0.999 | 17 | 0.667 | 9 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase | |
| Candidate 0254 | 0.999 | 11 | 0.750 | 8 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11440 (def, b3287) -> peptide deformylase |
| Group 064 | Genes common to all candidates in group G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase EG12715 (dxr, b0173) -> Dxr EG12436 (rseP, b0176) -> RseP zinc protease EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG10335 (frr, b0172) -> ribosome recycling factor EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase | |||||
| Candidate 0340 | 1.000 | 7 | 0.857 | 7 | Additional genes in candidate EG11178 (rbfA, b3167) -> 30S ribosome binding factor | |
| Candidate 0153 | 1.000 | 49 | 0.900 | 10 | Additional genes in candidate EG10770 (proS, b0194) -> prolyl-tRNA synthetase EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11539 (pyrH, b0171) -> PyrH G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase |
| Group 065 | Genes common to all candidates in group G7682 (degQ, b3234) -> serine endoprotease, periplasmic G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator EG11652 (degS, b3235) -> DegS serine endoprotease EG10978 (sspB, b3228) -> SspB EG10977 (sspA, b3229) -> stringent starvation protein A EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 | |||||
| Candidate 0165 | 0.999 | 8 | 0.889 | 9 | Additional genes in candidate EG12799 (mlaD, b3193) -> MlaD G7659 (mlaC, b3192) -> MlaC | |
| Candidate 0211 | 0.999 | 1 | 0.875 | 8 | Additional genes in candidate G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain |
| Group 066 | Genes common to all candidates in group G6719 (paaK, b1398) -> phenylacetate-CoA ligase G6717 (paaI, b1396) -> hydroxyphenylacetyl-CoA thioesterase G6713 (paaE, b1392) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6712 (paaD, b1391) -> phenylacetate degradation protein G6711 (paaC, b1390) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6710 (paaB, b1389) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6709 (paaA, b1388) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit | |||||
| Candidate 0160 | 0.999 | 3 | 1.000 | 9 | Additional genes in candidate G6715 (paaG, b1394) -> predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) G6720 (paaX, b1399) -> PaaX | |
| Candidate 0198 | 0.999 | 5 | 1.000 | 8 | Additional genes in candidate G6708 (paaZ, b1387) -> oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
| Group 067 | Genes common to all candidates in group EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein | |||||
| Candidate 0307 | 1.000 | 12 | 1.000 | 7 | Additional genes in candidate G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0216 | 1.000 | 6 | 1.000 | 8 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG12371 (nlpI, b3163) -> lipoprotein involved in cell division | |
| Candidate 0119 | 0.999 | 47 | 1.000 | 10 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG12095 (secG, b3175) -> SecG EG12794 (yhbY, b3180) -> predicted RNA-binding protein |
| Group 068 | Genes common to all candidates in group G7585 (yqiG, b3046) -> putative membrane protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G6482 (ycbS, b0940) -> predicted outer membrane usher protein G6387 (ybgQ, b0718) -> predicted outer membrane usher protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae | |||||
| Candidate 0228 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone | |
| Candidate 0177 | 0.999 | 2 | 0.000 | 9 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0229 | 0.999 | 2 | 0.125 | 8 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0227 | 0.999 | 2 | 0.000 | 8 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6795 (ydeT, b1505) -> predicted protein |
| Group 069 | Candidate 0202 | 1.000 | 15 | 0.000 | 8 | Genes in candidate EG11677 (modF, b0760) -> ModF EG11767 (yhhJ, b3485) -> predicted transporter subunit: membrane component of ABC superfamily EG12223 (rbbA, b3486) -> ribosome-associated ATPase EG12224 (yhiI, b3487) -> predicted HlyD family secretion protein G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 070 | Candidate 0213 | 1.000 | 7 | 0.500 | 8 | Genes in candidate EG10674 (oppA, b1243) -> OppA-oligopeptide ABC transporter substrate-binding EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF G6665 (mppA, b1329) -> periplasmic murein tripeptide binding protein G6778 (ddpD, b1484) -> YddP G7570 (ygiS, b3020) -> predicted transporter subunit |
| Group 071 | Candidate 0250 | 1.000 | 24 | 1.000 | 8 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 072 | Candidate 0220 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 073 | Candidate 0255 | 1.000 | 12 | 0.500 | 8 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10251 (dut, b3640) -> Dut EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG11312 (yicR, b3638) -> hypothetical protein G6122 (ykfG, b0247) -> CP4-6 prophage; predicted DNA repair protein G7082 (yeeS, b2002) -> CP4-44 prophage; predicted DNA repair protein G7379 (yfjY, b2644) -> CP4-57 prophage; predicted DNA repair protein |
| Group 074 | Candidate 0212 | 1.000 | 25 | 0.250 | 8 | Genes in candidate EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component G7990 (fruB, b2169) -> FruB |
| Group 075 | Candidate 0249 | 1.000 | 9 | 1.000 | 8 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10415 (greA, b3181) -> transcription elongation factor GreA EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12794 (yhbY, b3180) -> predicted RNA-binding protein EG50011 (folP, b3177) -> FolP |
| Group 076 | Candidate 0204 | 1.000 | 19 | 0.625 | 8 | Genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly G7454 (csdA, b2810) -> cysteine sulfinate desulfinase |
| Group 077 | Genes common to all candidates in group G6359 (gltI, b0655) -> GltI EG12837 (yhdZ, b3271) -> YhdZ EG12836 (yhdY, b3270) -> YhdY EG12835 (yhdX, b3269) -> YhdX EG12663 (gltL, b0652) -> GltL EG12662 (gltK, b0653) -> GltK EG12661 (gltJ, b0654) -> GltJ | |||||
| Candidate 0223 | 0.999 | 5 | 0.375 | 8 | Additional genes in candidate EG10389 (glnQ, b0809) -> GlnQ | |
| Candidate 0201 | 1.000 | 8 | 0.250 | 8 | Additional genes in candidate EG12834 (yhdW, b3268) -> YhdW |
| Group 078 | Genes common to all candidates in group EG10298 (fepG, b0589) -> FepG EG10296 (fepD, b0590) -> FepD EG10295 (fepC, b0588) -> FepC EG10290 (fecE, b4287) -> FecE EG10289 (fecD, b4288) -> FecD EG10288 (fecC, b4289) -> FecC | |||||
| Candidate 0238 | 0.999 | 9 | 0.375 | 8 | Additional genes in candidate EG10287 (fecB, b4290) -> FecB EG10294 (fepB, b0592) -> FepB | |
| Candidate 0237 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10287 (fecB, b4290) -> FecB EG10303 (fhuB, b0153) -> FhuB | |
| Candidate 0236 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10294 (fepB, b0592) -> FepB EG10304 (fhuC, b0151) -> FhuC | |
| Candidate 0235 | 0.999 | 15 | 0.375 | 8 | Additional genes in candidate EG10303 (fhuB, b0153) -> FhuB EG10304 (fhuC, b0151) -> FhuC |
| Group 079 | Genes common to all candidates in group G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer G7409 (ygaD, b2700) -> conserved protein EG12022 (dusC, b2140) -> tRNA dihydrouridine synthase EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer EG11645 (ydeJ, b1537) -> conserved protein EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase EG10387 (glnL, b3869) -> NtrB | |||||
| Candidate 0225 | 0.999 | 4 | 0.625 | 8 | Additional genes in candidate EG10317 (fis, b3261) -> Fis | |
| Candidate 0224 | 0.999 | 5 | 0.625 | 8 | Additional genes in candidate G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair |
| Group 080 | Candidate 0219 | 0.999 | 6 | 0.000 | 8 | Genes in candidate EG10491 (iclR, b4018) -> IclR transcriptional repressor EG12278 (yiaJ, b3574) -> YiaJ transcriptional repressor G6144 (yagI, b0272) -> CP4-6 prophage; predicted DNA-binding transcriptional regulator G6201 (mhpR, b0346) -> MhpR transcriptional activator G6276 (allR, b0506) -> AllR transcriptional repressor G7003 (kdgR, b1827) -> KdgR transcriptional repressor G7161 (yfaX, b2248) -> predicted DNA-binding transcriptional regulator G7912 (yjhI, b4299) -> KpLE2 phage-like element; predicted DNA-binding transcriptional regulator |
| Group 081 | Candidate 0252 | 0.999 | 2 | 1.000 | 8 | Genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10983 (suhB, b2533) -> inositol monophosphatase EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase G7325 (iscS, b2530) -> cysteine desulfurase monomer G7326 (iscR, b2531) -> IscR transcriptional dual regulator |
| Group 082 | Candidate 0206 | 0.999 | 4 | 0.375 | 8 | Genes in candidate EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator EG11961 (lldP, b3603) -> LldP lactate transporter EG11962 (lldR, b3604) -> LldR transcriptional repressor G6176 (ykgE, b0306) -> predicted oxidoreductase G6177 (ykgF, b0307) -> predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain G6178 (ykgG, b0308) -> predicted transporter G7542 (glcA, b2975) -> GlcA glycolate transporter G7546 (glcC, b2980) -> GlcC transcriptional dual regulator |
| Group 083 | Candidate 0245 | 0.999 | 1 | 1.000 | 8 | Genes in candidate EG10230 (dksA, b0145) -> RNA polymerase-binding transcription factor EG10605 (mrcB, b0149) -> MrcB EG10690 (pcnB, b0143) -> poly(A) polymerase I EG10949 (sfsA, b0146) -> predicted DNA-binding transcriptional regulator of maltose metabolism EG11362 (yadB, b0144) -> glutamyl-Q tRNA(Asp) synthetase EG11374 (folK, b0142) -> 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase EG11675 (panB, b0134) -> 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer EG11746 (panC, b0133) -> pantothenate synthetase monomer |
| Group 084 | Genes common to all candidates in group G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein EG10313 (fimF, b4318) -> fimbrial morphology EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) | |||||
| Candidate 0234 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate EG11974 (fimI, b4315) -> fimbrial protein G6290 (sfmA, b0530) -> predicted fimbrial-like adhesin protein G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein | |
| Candidate 0232 | 0.999 | 2 | 0.000 | 8 | Additional genes in candidate G6290 (sfmA, b0530) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein | |
| Candidate 0231 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0230 | 0.999 | 1 | 0.000 | 8 | Additional genes in candidate G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone |
| Group 085 | Genes common to all candidates in group G7893 (idnD, b4267) -> L-idonate 5-dehydrogenase G7339 (yphC, b2545) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6963 (ydjL, b1776) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6961 (ydjJ, b1774) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6838 (rspB, b1580) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding EG10993 (tdh, b3616) -> Tdh | |||||
| Candidate 0164 | 0.999 | 18 | 0.111 | 9 | Additional genes in candidate EG12417 (gatD, b2091) -> galactitol-1-phosphate dehydrogenase G6651 (ycjQ, b1313) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7945 (yjjN, b4358) -> predicted L-galactonate oxidoreductase | |
| Candidate 0305 | 0.999 | 6 | 0.143 | 7 | Additional genes in candidate EG10512 (kbl, b3617) -> Kbl |
| Group 086 | Genes common to all candidates in group EG11404 (ychF, b1203) -> putative GTP-binding protein EG11294 (ispE, b1208) -> IspE EG11293 (lolB, b1209) -> outer membrane lipoprotein, localization of lipoproteins in the outer membrane EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG10427 (hemA, b1210) -> HemA | |||||
| Candidate 0222 | 1.000 | 8 | 1.000 | 8 | Additional genes in candidate EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG12424 (prmC, b1212) -> protein-(glutamine-N5) methyltransferase | |
| Candidate 0316 | 1.000 | 1 | 1.000 | 7 | Additional genes in candidate EG10885 (rplY, b2185) -> 50S ribosomal subunit protein L25 |
| Group 087 | Genes common to all candidates in group G7895 (insD-6, b4273) -> IS2 element protein G7584 (insD-5, b3045) -> IS2 element protein G7480 (insD-4, b2860) -> IS2 element protein G7076 (insD-3, b1996) -> IS2 element protein G6723 (insD-2, b1402) -> IS2 element protein G6213 (insD-1, b0361) -> IS2 element protein | |||||
| Candidate 0199 | 0.999 | 3 | 0.000 | 8 | Additional genes in candidate G7481 (insC-4, b2861) -> IS2 element protein InsA G7583 (insC-5, b3044) -> IS2 element protein InsA | |
| Candidate 0260 | 0.999 | 2 | 0.000 | 7 | Additional genes in candidate G6836 (insD, b1578) -> Qin prophage; predicted transposase |
| Group 088 | Genes common to all candidates in group G6825 (cspI, b1552) -> Qin prophage; cold shock protein G6511 (cspG, b0990) -> cold shock protein CspG EG12205 (cspF, b1558) -> Qin prophage; cold shock protein EG12204 (cspC, b1823) -> stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator EG12179 (cspE, b0623) -> transcription antiterminator and regulator of RNA stability EG10166 (cspA, b3556) -> CspA transcriptional activator | |||||
| Candidate 0333 | 0.999 | 5 | 0.000 | 7 | Additional genes in candidate EG11111 (cspD, b0880) -> DNA replication inhibitor | |
| Candidate 0248 | 0.999 | 6 | 0.000 | 8 | Additional genes in candidate EG12203 (cspB, b1557) -> Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator G6510 (cspH, b0989) -> stress protein, member of the CspA family |
| Group 089 | Genes common to all candidates in group G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G6157 (yagT, b0286) -> aldehyde ferredoxin oxidoreductase, Fe-S subunit G6156 (yagS, b0285) -> aldehyde ferredoxin oxidoreductase, FAD-binding subunit G6155 (yagR, b0284) -> aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit | |||||
| Candidate 0261 | 0.999 | 9 | 0.286 | 7 | Additional genes in candidate G6154 (yagQ, b0283) -> conserved protein | |
| Candidate 0200 | 0.999 | 19 | 0.375 | 8 | Additional genes in candidate G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage |
| Group 090 | Genes common to all candidates in group G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase | |||||
| Candidate 0274 | 0.999 | 3 | 0.571 | 7 | Additional genes in candidate EG12361 (kduD, b2842) -> 2-deoxy-D-gluconate 3-dehydrogenase G7892 (idnO, b4266) -> 5-keto-D-gluconate 5-reductase | |
| Candidate 0207 | 0.999 | 7 | 0.750 | 8 | Additional genes in candidate EG10971 (srlD, b2705) -> SrlD EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein EG12361 (kduD, b2842) -> 2-deoxy-D-gluconate 3-dehydrogenase | |
| Candidate 0279 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG10971 (srlD, b2705) -> SrlD G7514 (ygfF, b2902) -> predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0273 | 0.999 | 7 | 1.000 | 7 | Additional genes in candidate EG12606 (fabF, b1095) -> FabF G7514 (ygfF, b2902) -> predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain |
| Group 091 | Genes common to all candidates in group EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG12606 (fabF, b1095) -> FabF EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP | |||||
| Candidate 0323 | 1.000 | 15 | 1.000 | 7 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG10857 (rnc, b2567) -> RNase III EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein | |
| Candidate 0286 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG10857 (rnc, b2567) -> RNase III EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0239 | 1.000 | 13 | 1.000 | 8 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0205 | 0.999 | 12 | 1.000 | 8 | Additional genes in candidate EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0272 | 0.999 | 4 | 0.857 | 7 | Additional genes in candidate EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase G7880 (yjgI, b4249) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0321 | 0.999 | 4 | 0.857 | 7 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase G7880 (yjgI, b4249) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0458 | 1.000 | 7 | 0.833 | 6 | Additional genes in candidate EG10274 (fabB, b2323) -> FabB EG10277 (fabH, b1091) -> FabH |
| Group 092 | Candidate 0329 | 1.000 | 5 | 0.429 | 7 | Genes in candidate EG10183 (cysA, b2422) -> CysA EG10195 (cysP, b2425) -> CysP EG10197 (cysU, b2424) -> CysU EG10198 (cysW, b2423) -> CysW EG10929 (sbp, b3917) -> Sbp EG11573 (thiP, b0067) -> SfuB G6137 (afuB, b0263) -> AfuB |
| Group 093 | Candidate 0289 | 1.000 | 3 | 0.429 | 7 | Genes in candidate EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG11629 (potF, b0854) -> PotF EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI G6644 (puuA, b1297) -> glutamate-putrescine ligase |
| Group 094 | Candidate 0335 | 1.000 | 10 | 0.714 | 7 | Genes in candidate EG10158 (clpP, b0437) -> ClpP EG10159 (clpX, b0438) -> ClpX EG10466 (hupA, b4000) -> transcriptional dual regulator HU-α (HU-2) EG10467 (hupB, b0440) -> transcriptional dual regulator HU-β, NS1 (HU-1) EG10542 (lon, b0439) -> Lon EG11003 (tig, b0436) -> trigger factor; a molecular chaperone involved in cell division G6242 (ppiD, b0441) -> periplasmic folding helper protein |
| Group 095 | Candidate 0314 | 1.000 | 5 | 1.000 | 7 | Genes in candidate EG10440 (ihfA, b1712) -> integration host factor (IHF), α subunit EG10506 (infC, b1718) -> protein chain initiation factor IF-3 EG10709 (pheS, b1714) -> phenylalanyl-tRNA synthetase α-chain EG10710 (pheT, b1713) -> phenylalanyl-tRNA synthetase β-chain EG10881 (rplT, b1716) -> 50S ribosomal subunit protein L20 EG11001 (thrS, b1719) -> threonyl-tRNA synthetase EG11231 (rpmI, b1717) -> 50S ribosomal subunit protein L35 |
| Group 096 | Genes common to all candidates in group EG10784 (pstC, b3727) -> PstC EG10783 (pstB, b3725) -> PstB EG10782 (pstA, b3726) -> PstA EG10735 (phoU, b3724) -> PhoU phosphate transport system protein EG10733 (phoR, b0400) -> PhoR sensory histidine kinase - phosphorylated EG10728 (phoB, b0399) -> PhoB-Phosphorylated transcriptional dual regulator | |||||
| Candidate 0292 | 1.000 | 4 | 1.000 | 7 | Additional genes in candidate EG10734 (pstS, b3728) -> PstS | |
| Candidate 0291 | 1.000 | 4 | 1.000 | 7 | Additional genes in candidate EG11218 (creB, b4398) -> CreB-Phosphorylated transcriptional regulator |
| Group 097 | Candidate 0297 | 1.000 | 13 | 0.714 | 7 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites G6871 (rsxA, b1627) -> integral membrane protein of SoxR-reducing complex G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6873 (rsxC, b1629) -> member of SoxR-reducing complex G6874 (rsxD, b1630) -> integral membrane protein of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex G6876 (rsxE, b1632) -> integral membrane protein of SoxR-reducing complex |
| Group 098 | Candidate 0275 | 1.000 | 1 | 0.857 | 7 | Genes in candidate EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG11440 (def, b3287) -> peptide deformylase EG11604 (smf, b3286 (obsolete)) -> conserved protein EG11605 (smg, b3284) -> conserved protein EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase G7699 (yrdD, b3283) -> predicted DNA topoisomerase |
| Group 099 | Genes common to all candidates in group EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG12780 (diaA, b3149) -> DnaA initiator-associating factor for replication initiation G7642 (yraM, b3147) -> putative glycosylase G7644 (yraP, b3150) -> lipoprotein | |||||
| Candidate 0285 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 | |
| Candidate 0284 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 G7641 (rsmI, b3146) -> 16S rRNA 2'-O-ribose C1402 methyltransferase | |
| Candidate 0278 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate G7641 (rsmI, b3146) -> 16S rRNA 2'-O-ribose C1402 methyltransferase G7643 (yraN, b3148) -> conserved protein |
| Group 100 | Candidate 0322 | 0.999 | 10 | 1.000 | 7 | Genes in candidate EG10277 (fabH, b1091) -> FabH EG10859 (rne, b1084) -> RNase E EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12606 (fabF, b1095) -> FabF G6567 (nagZ, b1107) -> β-N-acetylhexosaminidase |
| Group 101 | Candidate 0341 | 0.999 | 4 | 1.000 | 7 | Genes in candidate EG10136 (cca, b3056) -> fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase EG10239 (dnaG, b3066) -> DNA primase EG10896 (rpoD, b3067) -> RNA polymerase, sigma 70 (sigma D) factor EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 EG11171 (ygjD, b3064) -> YgjD, target for YeaZ protease EG11673 (folB, b3058) -> FolB EG11674 (ygiH, b3059) -> conserved inner membrane protein |
| Group 102 | Candidate 0328 | 0.999 | 1 | 0.143 | 7 | Genes in candidate EG10223 (deoR, b0840) -> DeoR transcriptional repressor EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism |
| Group 103 | Candidate 0271 | 0.999 | 6 | 0.143 | 7 | Genes in candidate EG11354 (emrA, b2685) -> EmrA Membrane Fusion Protein EG11439 (emrB, b2686) -> EmrB multidrug MFS transporter EG11764 (yibH, b3597) -> putative membrane protein EG11954 (sdsR, b4082) -> predicted membrane fusion protein of efflux pump EG12290 (yiaV, b3586) -> predicted membrane fusion protein (MFP) component of efflux pump, signal anchor EG13283 (emrY, b2367) -> EmrY putative multidrug MFS transporter G7233 (emrK, b2368) -> EmrK putative membrane fusion protein |
| Group 104 | Candidate 0343 | 0.999 | 26 | 0.143 | 7 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G6861 (ydgI, b1605) -> ArcD APC transporter G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |
| Group 105 | Genes common to all candidates in group EG10004 (dfp, b3639) -> Dfp EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase | |||||
| Candidate 0354 | 0.999 | 1 | 0.857 | 7 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase EG10965 (gmk, b3648) -> Gmk EG11192 (yicC, b3644) -> conserved protein | |
| Candidate 0353 | 0.999 | 5 | 0.857 | 7 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase EG10965 (gmk, b3648) -> Gmk G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0358 | 0.999 | 10 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10965 (gmk, b3648) -> Gmk G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0359 | 0.999 | 3 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10965 (gmk, b3648) -> Gmk EG11192 (yicC, b3644) -> conserved protein | |
| Candidate 0357 | 0.999 | 2 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11192 (yicC, b3644) -> conserved protein EG11440 (def, b3287) -> peptide deformylase |
| Group 106 | Candidate 0310 | 0.999 | 2 | 1.000 | 7 | Genes in candidate EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10548 (lspA, b0027) -> prolipoprotein signal peptidase II EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 EG11079 (ribF, b0025) -> bifunctional riboflavin kinase / FMN adenylyltransferase EG11080 (fkpB, b0028) -> peptidylprolyl isomerase EG11081 (ispH, b0029) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase G6561 (murJ, b1069) -> lipid II flippase |
| Group 107 | Genes common to all candidates in group EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10687 (parE, b3030) -> topoisomerase IV subunit B EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10242 (dnaN, b3701) -> DnaN EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator | |||||
| Candidate 0326 | 0.999 | 11 | 1.000 | 7 | Additional genes in candidate EG10686 (parC, b3019) -> topoisomerase IV subunit A | |
| Candidate 0325 | 0.999 | 8 | 0.857 | 7 | Additional genes in candidate G7313 (hda, b2496) -> regulator of DnaA that prevents premature reinitiation of DNA replication |
| Group 108 | Candidate 0327 | 0.999 | 11 | 0.000 | 7 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit EG11946 (nrfC, b4072) -> formate-dependent nitrite reductase, 4Fe-4S subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6899 (ydhX, b1671) -> predicted 4Fe-4S ferredoxin-type protein G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein |
| Group 109 | Candidate 0290 | 0.999 | 3 | 0.286 | 7 | Genes in candidate EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6266 (ybbL, b0490) -> predicted transporter subunit: ATP-binding component of ABC superfamily |
| Group 110 | Candidate 0304 | 0.999 | 29 | 0.000 | 7 | Genes in candidate EG10567 (manX, b1817) -> ManX EG10568 (manY, b1818) -> ManY EG10569 (manZ, b1819) -> ManZ EG12769 (agaB, b3138) -> AgaB EG12770 (agaC, b3139) -> AgaC G7632 (agaV, b3133) -> PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) G7635 (agaD, b3140) -> AgaD |
| Group 111 | Candidate 0317 | 0.999 | 31 | 0.714 | 7 | Genes in candidate EG10377 (glgA, b3429) -> glycogen synthase EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10379 (glgC, b3430) -> GlgC EG10380 (glgP, b3428) -> GlgP EG10381 (glgX, b3431) -> glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase EG10560 (malP, blu) -> maltodextrin phosphorylase monomer EG10561 (malQ, b3416) -> amylomaltase |
| Group 112 | Candidate 0266 | 0.999 | 1 | 1.000 | 7 | Genes in candidate EG12060 (napC, b2202) -> cytochrome c protein EG12061 (napB, b2203) -> small subunit of periplasmic nitrate reductase, cytochrome c550 protein EG12062 (napH, b2204) -> ferredoxin-type protein EG12064 (napG, b2205) -> ferredoxin-type protein EG12067 (napA, b2206) -> large subunit of periplasmic nitrate reductase, molybdoprotein EG12068 (napF, b2208) -> ferredoxin-type protein EG12143 (napD, b2207) -> signal peptide-binding chaperone for NapA |
| Group 113 | Candidate 0312 | 0.999 | 11 | 0.143 | 7 | Genes in candidate EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10481 (hycH, b2718) -> protein required for maturation of hydrogenase 3 G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7306 (hyfI, b2489) -> hydrogenase 4, small subunit |
| Group 114 | Candidate 0267 | 0.999 | 1 | 1.000 | 7 | Genes in candidate EG11779 (trmI, b2960) -> tRNA (m7G46) methyltransferase G7526 (yggR, b2950) -> predicted transporter G7527 (yggS, b2951) -> predicted enzyme G7528 (yggT, b2952) -> predicted inner membrane protein G7529 (yggU, b2953) -> conserved protein G7530 (rdgB, b2954) -> RdgB G7531 (yggW, b2955) -> predicted oxidoreductase |
| Group 115 | Candidate 0313 | 0.999 | 20 | 0.429 | 7 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C |
| Group 116 | Genes common to all candidates in group G7596 (ygjG, b3073) -> putrescine aminotransferase / diamine transaminase EG10066 (argD, b3359) -> ArgD EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10064 (argB, b3959) -> acetylglutamate kinase monomer | |||||
| Candidate 0345 | 0.999 | 24 | 0.714 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10068 (argG, b3172) -> ArgG G6944 (astC, b1748) -> AstC | |
| Candidate 0344 | 0.999 | 21 | 0.429 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI G6944 (astC, b1748) -> AstC | |
| Candidate 0346 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10063 (argA, b2818) -> ArgA EG10068 (argG, b3172) -> ArgG G6944 (astC, b1748) -> AstC | |
| Candidate 0500 | 0.999 | 2 | 1.000 | 6 | Additional genes in candidate EG10068 (argG, b3172) -> ArgG EG10070 (argR, b3237) -> ArgR |
| Group 117 | Genes common to all candidates in group EG11787 (gmd, b2053) -> GDP-mannose 4,6-dehydratase EG11978 (rfbA, b2039) -> dTDP-glucose pyrophosphorylase EG11979 (rfbC, b2038) -> dTDP-4-dehydrorhamnose 3,5-epimerase EG12411 (rfbD, b2040) -> dTDP-4-dehydrorhamnose reductase | |||||
| Candidate 0269 | 1.000 | 32 | 0.429 | 7 | Additional genes in candidate EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0334 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0479 | 0.999 | 16 | 1.000 | 6 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11788 (fcl, b2052) -> Fcl |
| Group 118 | Genes common to all candidates in group EG10790 (purA, b4177) -> PurA EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10436 (hflK, b4174) -> regulator of FtsH protease EG10435 (hflC, b4175) -> regulator of FtsH protease | |||||
| Candidate 0435 | 0.999 | 5 | 1.000 | 6 | Additional genes in candidate EG11259 (rnr, b4179) -> RNase R | |
| Candidate 0315 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity |
| Group 119 | Genes common to all candidates in group G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 EG10905 (rpsF, b4200) -> 30S ribosomal subunit protein S6 EG10870 (rplI, b4203) -> 50S ribosomal subunit protein L9 | |||||
| Candidate 0402 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10764 (priB, b4201) -> PriB EG11259 (rnr, b4179) -> RNase R | |
| Candidate 0465 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10236 (dnaB, b4052) -> DnaB EG10764 (priB, b4201) -> PriB | |
| Candidate 0324 | 0.999 | 2 | 0.857 | 7 | Additional genes in candidate EG10236 (dnaB, b4052) -> DnaB EG10790 (purA, b4177) -> PurA EG11786 (yfiF, b2581) -> predicted methyltransferase | |
| Candidate 0287 | 0.999 | 3 | 0.857 | 7 | Additional genes in candidate EG10790 (purA, b4177) -> PurA EG11259 (rnr, b4179) -> RNase R EG11786 (yfiF, b2581) -> predicted methyltransferase |
| Group 120 | Genes common to all candidates in group G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase | |||||
| Candidate 0347 | 0.999 | 19 | 0.000 | 7 | Additional genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase | |
| Candidate 0376 | 0.999 | 14 | 0.333 | 6 | Additional genes in candidate EG12494 (ulaB, b4194) -> UlaB |
| Group 121 | Genes common to all candidates in group EG12125 (hisQ, b2308) -> HisQ EG11627 (artM, b0861) -> ArtM EG11626 (artQ, b0862) -> ArtQ EG11624 (artP, b0864) -> ArtP EG10007 (hisM, b2307) -> HisM | |||||
| Candidate 0505 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate G7037 (yecS, b1918) -> predicted transporter subunit: membrane component of ABC superfamily | |
| Candidate 0352 | 0.999 | 4 | 0.143 | 7 | Additional genes in candidate EG11625 (artI, b0863) -> ArtI EG11628 (artJ, b0860) -> ArtJ |
| Group 122 | Genes common to all candidates in group G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase G7856 (ulaA, b4193) -> UlaA EG12495 (ulaC, b4195) -> UlaC EG12494 (ulaB, b4194) -> UlaB | |||||
| Candidate 0262 | 0.999 | 13 | 0.429 | 7 | Additional genes in candidate EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase | |
| Candidate 0373 | 0.999 | 12 | 1.000 | 6 | Additional genes in candidate G7855 (ulaG, b4192) -> L-ascorbate 6-phosphate lactonase |
| Group 123 | Genes common to all candidates in group EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) EG10880 (rplS, b2606) -> 50S ribosomal subunit protein L19 EG10915 (rpsP, b2609) -> 30S ribosomal subunit protein S16 EG11023 (trmD, b2607) -> TrmD EG11153 (rimM, b2608) -> ribosome maturation protein | |||||
| Candidate 0453 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10346 (ftsY, b3464) -> SRP receptor | |
| Candidate 0452 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10857 (rnc, b2567) -> RNase III | |
| Candidate 0320 | 1.000 | 3 | 1.000 | 7 | Additional genes in candidate EG12442 (yfjD, b2612 (obsolete)) -> predicted inner membrane protein G7355 (ypjD, b2611) -> predicted inner membrane protein |
| Group 124 | Genes common to all candidates in group EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I EG11580 (ybiB, b0800) -> predicted transferase/phosphorylase | |||||
| Candidate 0406 | 0.999 | 10 | 1.000 | 6 | Additional genes in candidate EG10683 (pabB, b1812) -> PabB EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0393 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0296 | 0.999 | 18 | 1.000 | 7 | Additional genes in candidate EG10682 (pabA, b3360) -> PabA EG10683 (pabB, b1812) -> PabB EG12362 (menF, b2265) -> MenF |
| Group 125 | Genes common to all candidates in group EG10217 (accD, b2316) -> acetyl-CoA carboxyltransferase, β subunit EG10327 (folC, b2315) -> bifunctional folypolyglutamate synthetase / dihydrofolate synthetase EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG11059 (usg, b2319) -> predicted semialdehyde dehydrogenase | |||||
| Candidate 0491 | 0.999 | 5 | 1.000 | 6 | Additional genes in candidate EG10088 (asd, b3433) -> Asd EG10169 (cvpA, b2313) -> membrane protein required for colicin V production | |
| Candidate 0490 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10088 (asd, b3433) -> Asd EG11577 (leuB, b0073) -> LeuB | |
| Candidate 0332 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG10218 (dedD, b2314) -> cell division protein DedD EG10794 (purF, b2312) -> PurF |
| Group 126 | Genes common to all candidates in group EG10200 (cytR, b3934) -> CytR EG10525 (lacI, b0345) -> LacI transcriptional repressor EG10800 (purR, b1658) -> PurR EG10819 (rbsR, b3753) -> RbsR transcriptional repressor | |||||
| Candidate 0493 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate EG10087 (ascG, b2714) -> AscG transcriptional repressor G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type | |
| Candidate 0472 | 0.999 | 1 | 0.000 | 6 | Additional genes in candidate EG10254 (ebgR, b3075) -> EbgR transcriptional repressor G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type | |
| Candidate 0342 | 0.999 | 2 | 0.000 | 7 | Additional genes in candidate EG10087 (ascG, b2714) -> AscG transcriptional repressor EG10364 (galR, b2837) -> GalR transcriptional dual regulator EG10365 (galS, b2151) -> GalS transcriptional dual regulator |
| Group 127 | Genes common to all candidates in group G6851 (ynfK, b1593) -> predicted dethiobiotin synthetase EG10121 (bioF, bioF) -> 8-amino-7-oxononanoate synthase monomer EG10120 (bioD, bioD) -> dethiobiotin synthetase monomer EG10119 (bioC, bioC) -> BioC methyltransferase EG10118 (bioB, bioB) -> biotin synthase monomer | |||||
| Candidate 0485 | 1.000 | 7 | 0.667 | 6 | Additional genes in candidate EG10117 (bioA, bioA) -> adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer | |
| Candidate 0484 | 1.000 | 4 | 0.500 | 6 | Additional genes in candidate EG10512 (kbl, b3617) -> Kbl |
| Group 128 | Candidate 0368 | 1.000 | 1 | 0.000 | 6 | Genes in candidate G6212 (insC-1, b0360) -> IS2 element protein InsA G6724 (insC-2, b1403) -> IS2 element protein InsA G7077 (insC-3, b1997) -> IS2 element protein InsA G7481 (insC-4, b2861) -> IS2 element protein InsA G7583 (insC-5, b3044) -> IS2 element protein InsA G7894 (insC-6, b4272) -> IS2 element protein InsA |
| Group 129 | Candidate 0483 | 1.000 | 5 | 0.000 | 6 | Genes in candidate EG10124 (bisC, bisC) -> biotin sulfoxide reductase EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A EG11814 (torA, b0997) -> trimethylamine N-oxide reductase, catalytic subunit G6845 (ynfE, b1587) -> oxidoreductase subunit G6846 (ynfF, b1588) -> oxidoreductase subunit G7022 (torZ, bisZ) -> trimethylamine N-oxide reductase III, TorZ subunit |
| Group 130 | Candidate 0382 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G7435 (ygcQ, b2769) -> predicted flavoprotein G7436 (ygcR, b2770) -> predicted flavoprotein |
| Group 131 | Candidate 0423 | 1.000 | 7 | 0.667 | 6 | Genes in candidate EG10536 (livF, b3454) -> LivF EG10537 (livG, b3455) -> LivG EG10538 (livH, b3457) -> LivH EG10539 (livJ, b3460) -> LivJ EG10540 (livK, b3458) -> LivK, leucine binding protein of the high-affinity branched-chain amino acid transport system EG10541 (livM, b3456) -> LivM |
| Group 132 | Candidate 0418 | 1.000 | 18 | 0.000 | 6 | Genes in candidate EG10578 (melB, b4120) -> MelB GPH transporter EG11658 (uidB, b1616) -> UidB glucuronides GPH transporter EG11686 (yicJ, b3657) -> YicJ GPH transporter EG11841 (yihO, b3876) -> YihO GPH transporter EG11842 (yihP, b3877) -> YihP GPH transporter G6142 (yagG, b0270) -> YagG GPH Transporter |
| Group 133 | Genes common to all candidates in group EG11406 (ribC, b1662) -> RibC EG11322 (ribE, b0415) -> RibE EG11321 (ribD, b0414) -> fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase EG10666 (nusB, b0416) -> transcription antitermination protein NusB | |||||
| Candidate 0409 | 1.000 | 3 | 1.000 | 6 | Additional genes in candidate EG11320 (nrdR, b0413) -> NrdR G6234 (thiL, b0417) -> thiamine monophosphate kinase | |
| Candidate 0438 | 1.000 | 3 | 1.000 | 6 | Additional genes in candidate EG10408 (glyA, b2551) -> GlyA EG11320 (nrdR, b0413) -> NrdR | |
| Candidate 0431 | 1.000 | 4 | 1.000 | 6 | Additional genes in candidate EG10465 (ribB, b3041) -> 3,4-dihydroxy-2-butanone 4-phosphate synthase EG11320 (nrdR, b0413) -> NrdR | |
| Candidate 0430 | 1.000 | 8 | 1.000 | 6 | Additional genes in candidate EG10465 (ribB, b3041) -> 3,4-dihydroxy-2-butanone 4-phosphate synthase EG11331 (ribA, b1277) -> GTP cyclohydrolase II |
| Group 134 | Candidate 0439 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10404 (gltD, b3213) -> glutamate synthase, small subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit G7145 (yeiT, b2146) -> NADH-dependent dihydropyrimidine dehydrogenase subunit G7497 (ygfK, b2878) -> putative oxidoreductase Fe-S subunit; possible component of selenate reductase G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit |
| Group 135 | Candidate 0411 | 1.000 | 13 | 0.500 | 6 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12381 (nrdF, b2676) -> NrdF EG20257 (nrdE, b2675) -> NrdE G7401 (nrdH, b2673) -> glutaredoxin-like protein G7402 (nrdI, b2674) -> flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase |
| Group 136 | Candidate 0504 | 1.000 | 5 | 0.333 | 6 | Genes in candidate EG10012 (cydC, b0886) -> CydC EG10173 (cydA, b0733) -> cytochrome bd-I terminal oxidase subunit I EG10174 (cydB, b0734) -> cytochrome bd-I terminal oxidase subunit II EG11379 (appB, b0979) -> cytochrome bd-II terminal oxidase subunit II EG11380 (appC, b0978) -> cytochrome bd-II terminal oxidase subunit I EG11405 (cydD, b0887) -> CydD |
| Group 137 | Candidate 0380 | 1.000 | 1 | 0.000 | 6 | Genes in candidate EG11826 (etk, b0981) -> autophosphorylating protein tyrosine kinase G6503 (etp, b0982) -> phosphotyrosine-protein phosphatase G6504 (gfcE, b0983) -> predicted exopolysaccharide export protein G7105 (wzc, b2060) -> tyrosine kinase involved in colanic acid biosynthesis G7106 (wzb, b2061) -> tyrosine phosphatase G7107 (wza, b2062) -> lipoprotein required for capsular polysaccharide translocation through the outer membrane |
| Group 138 | Genes common to all candidates in group G81 (uxaC, b3092) -> D-glucuronate isomerase / D-galacturonate isomerase G6816 (ydfI, b1542) -> predicted mannonate dehydrogenase EG20248 (uxuB, b4323) -> D-mannonate oxidoreductase EG12036 (yeiQ, b2172) -> predicted dehydrogenase, NAD-dependent EG11065 (uxaB, b1521) -> altronate oxidoreductase | |||||
| Candidate 0413 | 1.000 | 2 | 0.167 | 6 | Additional genes in candidate EG10616 (mtlD, b3600) -> mannitol-1-phosphate 5-dehydrogenase | |
| Candidate 0391 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate EG12734 (uxaA, b3091) -> D-altronate dehydratase |
| Group 139 | Genes common to all candidates in group EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG12200 (yegD, b2069) -> actin family protein G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription | |||||
| Candidate 0463 | 0.999 | 6 | 0.833 | 6 | Additional genes in candidate EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 EG12193 (cbpA, b1000) -> CbpA monomer | |
| Candidate 0462 | 0.999 | 2 | 1.000 | 6 | Additional genes in candidate EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |
| Candidate 0464 | 1.000 | 2 | 0.833 | 6 | Additional genes in candidate EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG12193 (cbpA, b1000) -> CbpA monomer |
| Group 140 | Genes common to all candidates in group EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10543 (lpd, b0116) -> E3 monomer | |||||
| Candidate 0421 | 0.999 | 17 | 1.000 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6174 (ykgC, b0304) -> predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain | |
| Candidate 0420 | 1.000 | 15 | 0.833 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants | |
| Candidate 0446 | 0.999 | 22 | 1.000 | 6 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10980 (sucB, b0727) -> SucB | |
| Candidate 0422 | 0.999 | 13 | 0.833 | 6 | Additional genes in candidate EG10576 (mdh, b3236) -> Mdh G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 141 | Candidate 0404 | 0.999 | 5 | 0.000 | 6 | Genes in candidate EG10715 (phnF, b4102) -> PhnF transcriptional regulator EG11109 (mngR, b0730) -> MngR EG11711 (yidP, b3684) -> predicted DNA-binding transcriptional regulator EG11838 (yihL, b3872) -> YihL putative transcriptional regulator G7133 (yegW, b2101) -> predicted DNA-binding transcriptional regulator G7727 (frlR, b3375) -> predicted DNA-binding transcriptional regulator |
| Group 142 | Genes common to all candidates in group G7475 (ygeK, b2855) -> predicted DNA-binding transcriptional regulator EG11140 (uvrY, b1914) -> UvrY- Phosphorylated transcriptional regulator EG11103 (fimZ, b0535) -> FimZ transcriptional regulator EG11051 (uhpA, b3669) -> UhpA-Phosphorylated EG10821 (rcsB, b2217) -> RcsB | |||||
| Candidate 0399 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate EG11052 (uhpB, b3668) -> UhpB sensory histidine kinase - phosphorylated | |
| Candidate 0398 | 0.999 | 1 | 0.333 | 6 | Additional genes in candidate EG11609 (evgA, b2369) -> EvgA-Phosphorylated transcriptional activator |
| Group 143 | Candidate 0513 | 0.999 | 2 | 0.667 | 6 | Genes in candidate EG10001 (alr, b4053) -> alanine racemase 1, PLP-binding, biosynthetic EG10236 (dnaB, b4052) -> DnaB EG10870 (rplI, b4203) -> 50S ribosomal subunit protein L9 EG10905 (rpsF, b4200) -> 30S ribosomal subunit protein S6 EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 EG11408 (dadX, b1190) -> DadX |
| Group 144 | Candidate 0436 | 0.999 | 8 | 1.000 | 6 | Genes in candidate EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG11440 (def, b3287) -> peptide deformylase |
| Group 145 | Candidate 0417 | 0.999 | 1 | 1.000 | 6 | Genes in candidate EG10579 (menD, b2264) -> MenD EG11368 (menB, b2262) -> MenB EG11532 (menC, b2261) -> o-succinylbenzoate synthase EG12362 (menF, b2265) -> MenF EG12437 (menE, b2260) -> MenE EG12438 (menH, b2263) -> (1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
| Group 146 | Candidate 0427 | 0.999 | 10 | 0.000 | 6 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11552 (hydN, b2713) -> putative electron transport protein HydN EG12277 (ysaA, b3573) -> predicted hydrogenase, 4Fe-4S ferredoxin-type component G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein G7505 (ygfS, b2886) -> predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit |
| Group 147 | Candidate 0394 | 0.999 | 4 | 1.000 | 6 | Genes in candidate EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12095 (secG, b3175) -> SecG EG50011 (folP, b3177) -> FolP |
| Group 148 | Candidate 0444 | 0.999 | 1 | 1.000 | 6 | Genes in candidate EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase |
| Group 149 | Candidate 0482 | 0.999 | 5 | 0.833 | 6 | Genes in candidate EG10153 (moeA, bisB) -> molybdopterin biosynthesis EG11511 (mog, bisD) -> predicted molybdochelatase EG11595 (moaA, bisA) -> molybdopterin biosynthesis protein A EG11596 (moaB, b0782) -> MoaB subunit EG11598 (moaE, b0785) -> molybdopterin synthase large subunit EG11666 (moaC, b0783) -> molybdopterin biosynthesis protein C |
| Group 150 | Genes common to all candidates in group EG12125 (hisQ, b2308) -> HisQ EG11628 (artJ, b0860) -> ArtJ EG11625 (artI, b0863) -> ArtI EG10072 (argT, b2310) -> ArgT EG10007 (hisM, b2307) -> HisM | |||||
| Candidate 0507 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate EG11626 (artQ, b0862) -> ArtQ | |
| Candidate 0506 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate EG12124 (hisJ, b2309) -> HisJ |
| Group 151 | Candidate 0367 | 0.999 | 6 | 1.000 | 6 | Genes in candidate G6339 (citG, b0613) -> triphosphoribosyl-dephospho-CoA synthase G6340 (citX, b0614) -> apo-citrate lyase phosphoribosyl-dephospho-CoA transferase G6341 (citF, b0615) -> citrate lyase, citrate-ACP transferase α subunit G6342 (citE, b0616) -> citrate lyase, citryl-ACP lyase β subunit G6343 (citD, b0617) -> citrate lyase, acyl carrier γ subunit G6344 (citC, b0618) -> citrate lyase synthetase |
| Group 152 | Genes common to all candidates in group EG10187 (cysE, b3607) -> serine acetyltransferase monomer EG10196 (cysS, b0526) -> cysteinyl-tRNA synthetase EG11296 (radA, b4389) -> DNA recombination protein G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer | |||||
| Candidate 0474 | 0.999 | 3 | 1.000 | 6 | Additional genes in candidate EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer G7103 (wcaB, b2058) -> predicted colanic acid biosynthesis acyl transferase | |
| Candidate 0473 | 0.999 | 4 | 1.000 | 6 | Additional genes in candidate EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer | |
| Candidate 0475 | 0.999 | 3 | 1.000 | 6 | Additional genes in candidate EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase G7103 (wcaB, b2058) -> predicted colanic acid biosynthesis acyl transferase |
| Group 153 | Candidate 0379 | 0.999 | 1 | 0.333 | 6 | Genes in candidate EG11826 (etk, b0981) -> autophosphorylating protein tyrosine kinase G6504 (gfcE, b0983) -> predicted exopolysaccharide export protein G7097 (wzxC, b2046) -> WzxC G7098 (wcaJ, b2047) -> predicted colanic acid biosynthsis UDP-glucose lipid carrier transferase G7105 (wzc, b2060) -> tyrosine kinase involved in colanic acid biosynthesis G7107 (wza, b2062) -> lipoprotein required for capsular polysaccharide translocation through the outer membrane |
| Group 154 | Candidate 0407 | 0.999 | 4 | 0.500 | 6 | Genes in candidate EG10677 (oppD, b1246) -> OppD EG10720 (phnK, b4097) -> PhnK EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6778 (ddpD, b1484) -> YddP |
| Group 155 | Candidate 0372 | 0.999 | 3 | 1.000 | 6 | Genes in candidate EG12634 (cas3, b2761) -> predicted fused HD nuclease and DEAD box helicase EG12845 (cas2, b2754) -> predicted endoribonuclease G7425 (cas1, b2755) -> predicted integrase G7426 (casE, b2756) -> crRNA endonuclease G7427 (casD, b2757) -> Cascade subunit D G7428 (casC, b2758) -> Cascade subunit C |
| Group 156 | Candidate 0440 | 0.999 | 1 | 0.500 | 6 | Genes in candidate EG10391 (glpA, b2241) -> glycerol-3-phosphate dehydrogenase (anaerobic), large subunit EG10394 (glpD, b3426) -> GlpD EG10396 (glpF, b3927) -> GlpF EG10398 (glpK, b3926) -> GlpK EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator |
| Group 157 | Genes common to all candidates in group G6478 (ssuA, b0936) -> SsuA G6476 (ssuC, b0934) -> SsuC G6219 (tauC, b0367) -> TauC G6217 (tauA, b0365) -> TauA EG12358 (ssuB, b0933) -> SsuB | |||||
| Candidate 0375 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate G6218 (tauB, b0366) -> TauB | |
| Candidate 0374 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate G6477 (ssuD, b0935) -> alkanesulfonate monooxygenase |
| Group 158 | Candidate 0489 | 0.999 | 6 | 1.000 | 6 | Genes in candidate EG10088 (asd, b3433) -> Asd EG10217 (accD, b2316) -> acetyl-CoA carboxyltransferase, β subunit EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB |
| Group 159 | Candidate 0401 | 0.999 | 1 | 1.000 | 6 | Genes in candidate EG10767 (proA, b0243) -> ProA EG10768 (proB, b0242) -> ProB EG11255 (ybeB, b0637) -> predicted protein EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase G7656 (obgE, b3183) -> GTPase involved in chromosome partitioning and ribosome assembly |
| Group 160 | Genes common to all candidates in group G7676 (nanK, b3222) -> N-acetylmannosamine kinase G7344 (yphH, b2550) -> predicted DNA-binding transcriptional regulator, NAGC-like G6852 (dgsA, b1594) -> DgsA transcriptional repressor EG11956 (alsK, b4084) -> D-allose kinase EG11288 (mak, b0394) -> manno(fructo)kinase | |||||
| Candidate 0387 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate G6576 (nagK, b1119) -> N-acetyl-D-glucosamine kinase | |
| Candidate 0412 | 0.999 | 4 | 0.333 | 6 | Additional genes in candidate EG10636 (nagC, b0676) -> NagC transcriptional dual regulator |
| Group 161 | Genes common to all candidates in group EG11098 (xseB, b0422) -> exonuclease VII, small subunit EG11072 (xseA, b2509) -> exonuclease VII, large subunit EG10831 (recN, b2616) -> protein used in recombination and DNA repair EG10666 (nusB, b0416) -> transcription antitermination protein NusB EG10508 (ispA, b0421) -> geranyl diphosphate synthase / farnesyl diphosphate synthase | |||||
| Candidate 0499 | 0.999 | 6 | 1.000 | 6 | Additional genes in candidate EG10070 (argR, b3237) -> ArgR | |
| Candidate 0425 | 0.999 | 7 | 1.000 | 6 | Additional genes in candidate G7248 (ypdF, b2385) -> aminopeptidase |
| Group 162 | Candidate 0470 | 0.999 | 3 | 0.500 | 6 | Genes in candidate EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G7410 (mltB, b2701) -> membrane-bound lytic murein transglycosylase B |
| Group 163 | Candidate 0502 | 0.999 | 7 | 0.167 | 6 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11258 (focA, b0904) -> FocA formate FNT transporter G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G7309 (focB, b2492) -> FocB formate FNT transporter G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 |
| Group 164 | Candidate 0369 | 0.999 | 1 | 0.167 | 6 | Genes in candidate G6169 (insF-1, b0299) -> IS3 element protein InsF G6223 (insF-2, b0372) -> IS3 element protein InsF G6297 (insF-3, b0541) -> IS3 element protein InsF G6533 (insF-4, b1026) -> IS3 element protein InsF G7126 (insF-5, b2089) -> IS3 element protein InsF G7906 (insO-2, b4285) -> KpLE2 phage-like element; partial transposase |
| Group 165 | Candidate 0471 | 0.999 | 2 | 0.500 | 6 | Genes in candidate EG10200 (cytR, b3934) -> CytR EG10525 (lacI, b0345) -> LacI transcriptional repressor EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase EG10819 (rbsR, b3753) -> RbsR transcriptional repressor |
| Group 166 | Candidate 0467 | 0.999 | 1 | 0.500 | 6 | Genes in candidate EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A G6845 (ynfE, b1587) -> oxidoreductase subunit G6846 (ynfF, b1588) -> oxidoreductase subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6848 (ynfH, b1590) -> oxidoreductase, predicted membrane anchor subunit G6849 (dmsD, b1591) -> DMS reductase maturation protein |
| Group 167 | Candidate 0426 | 0.999 | 8 | 0.833 | 6 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12095 (secG, b3175) -> SecG |
| Group 168 | Genes common to all candidates in group G7454 (csdA, b2810) -> cysteine sulfinate desulfinase G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer | |||||
| Candidate 0519 | 1.000 | 1 | 0.800 | 5 | Additional genes in candidate G6905 (sufE, b1679) -> sulfur acceptor that activates SufS cysteine desulfurase | |
| Candidate 0365 | 1.000 | 8 | 0.833 | 6 | Additional genes in candidate G6712 (paaD, b1391) -> phenylacetate degradation protein G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex |
| Group 169 | Genes common to all candidates in group G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10667 (nusG, b3982) -> transcription termination factor NusG | |||||
| Candidate 0608 | 0.999 | 1 | 1.000 | 5 | Additional genes in candidate EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase | |
| Candidate 0408 | 1.000 | 9 | 1.000 | 6 | Additional genes in candidate EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 |
| Group 170 | Genes common to all candidates in group G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex EG11043 (tyrS, b1637) -> tyrosyl-tRNA synthetase | |||||
| Candidate 0563 | 0.999 | 2 | 1.000 | 5 | Additional genes in candidate G6880 (anmK, b1640) -> anhydro-N-acetylmuramic acid kinase | |
| Candidate 0392 | 0.999 | 8 | 1.000 | 6 | Additional genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer |
| Group 171 | Candidate 0705 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG10206 (dapB, b0031) -> DapB EG10637 (nanA, b3225) -> NanA G6140 (yagE, b0268) -> CP4-6 prophage; predicted lyase/synthase G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 172 | Candidate 0740 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10066 (argD, b3359) -> ArgD EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI G6944 (astC, b1748) -> AstC G7489 (ygeW, b2870) -> putative carbamoyltransferase |
| Group 173 | Candidate 0685 | 1.000 | 6 | 0.600 | 5 | Genes in candidate EG10261 (entC, b0593) -> isochorismate synthase 1 EG10682 (pabA, b3360) -> PabA EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I EG12362 (menF, b2265) -> MenF |
| Group 174 | Candidate 0546 | 1.000 | 9 | 0.000 | 5 | Genes in candidate EG11613 (eptA, b4114) -> predicted metal-dependent hydrolase EG11914 (yijP, b3955) -> conserved inner membrane protein EG12267 (eptB, b3546) -> phosphoethanolamine transferase G6418 (ybiP, b0815) -> predicted hydrolase, inner membrane G7655 (yhbX, b3173) -> predicted hydrolase, inner membrane |
| Group 175 | Candidate 0714 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10165 (crr, b2417) -> Crr EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component |
| Group 176 | Candidate 0583 | 1.000 | 4 | 1.000 | 5 | Genes in candidate EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase EG10938 (secD, b0408) -> SecD EG10940 (secF, b0409) -> SecF EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer EG11096 (yajC, b0407) -> YajC |
| Group 177 | Genes common to all candidates in group G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase EG10348 (fucA, b2800) -> FucA EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer | |||||
| Candidate 0744 | 1.000 | 1 | 0.200 | 5 | Additional genes in candidate EG10052 (araA, b0062) -> L-arabinose isomerase monomer | |
| Candidate 0743 | 1.000 | 11 | 0.000 | 5 | Additional genes in candidate G7419 (ygbL, b2738) -> predicted class II aldolase |
| Group 178 | Candidate 0658 | 1.000 | 2 | 0.600 | 5 | Genes in candidate EG10367 (gapA, b1779) -> glyceraldehyde 3-phosphate dehydrogenase-A monomer EG10368 (epd, b2927) -> Epd EG10703 (pgk, b2926) -> phosphoglycerate kinase EG11427 (tktA, b2935) -> TktA EG12100 (tktB, b2465) -> TktB |
| Group 179 | Candidate 0691 | 1.000 | 7 | 0.800 | 5 | Genes in candidate EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription |
| Group 180 | Candidate 0718 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10131 (cadA, b4131) -> CadA EG10961 (speC, b2965) -> SpeC EG10964 (speF, b0693) -> SpeF EG11501 (adiA, b4117) -> Adi G6094 (ldcC, b0186) -> LdcC |
| Group 181 | Candidate 0756 | 1.000 | 1 | 0.200 | 5 | Genes in candidate EG10027 (ackA, b2296) -> propionate kinase / acetate kinase EG11172 (tdcD, b3115) -> propionate kinase EG20173 (pta, b2297) -> Pta G7189 (yfbV, b2295) -> conserved inner membrane protein G7288 (eutD, b2458) -> predicted phosphotransacetylase subunit |
| Group 182 | Candidate 0521 | 1.000 | 5 | 0.000 | 5 | Genes in candidate G6521 (rutC, b1010) -> predicted aminoacrylate peracid reductase G6993 (yoaB, b1809) -> conserved protein G7626 (tdcF, b3113) -> predicted L-PSP (mRNA) endoribonuclease G7877 (yjgF, b4243) -> conserved protein G7879 (yjgH, b4248) -> predicted mRNA endoribonuclease |
| Group 183 | Candidate 0524 | 1.000 | 3 | 1.000 | 5 | Genes in candidate EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7216 (mlaA, b2346) -> MlaA G7659 (mlaC, b3192) -> MlaC |
| Group 184 | Candidate 0728 | 1.000 | 1 | 1.000 | 5 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10763 (priA, b3935) -> primosome factor N' |
| Group 185 | Genes common to all candidates in group EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB | |||||
| Candidate 0557 | 1.000 | 1 | 0.800 | 5 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G6401 (ybhJ, b0771) -> predicted hydratase | |
| Candidate 0549 | 0.999 | 1 | 0.800 | 5 | Additional genes in candidate EG12316 (acnB, b0118) -> bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase G6401 (ybhJ, b0771) -> predicted hydratase | |
| Candidate 0558 | 1.000 | 1 | 1.000 | 5 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G6205 (mhpE, b0352) -> 4-hydroxy-2-ketovalerate aldolase |
| Group 186 | Genes common to all candidates in group EG10222 (deoD, b4384) -> DeoD EG10221 (deoC, b4381) -> deoxyribose-phosphate aldolase EG10220 (deoB, b4383) -> phosphopentomutase EG10219 (deoA, b4382) -> DeoA | |||||
| Candidate 0698 | 0.999 | 6 | 1.000 | 5 | Additional genes in candidate EG10951 (ytjB, b4387) -> membrane protein | |
| Candidate 0697 | 1.000 | 7 | 0.600 | 5 | Additional genes in candidate G7732 (yhfW, b3380) -> predicted mutase |
| Group 187 | Genes common to all candidates in group G7442 (ygcE, b2776) -> predicted kinase EG12284 (lyxK, b3580) -> L-xylulose kinase EG11075 (xylB, b3564) -> xylulokinase EG10350 (fucK, b2803) -> L-fuculokinase | |||||
| Candidate 0661 | 0.999 | 1 | 0.400 | 5 | Additional genes in candidate EG11868 (rhaB, b3904) -> L-rhamnulose kinase | |
| Candidate 0660 | 1.000 | 1 | 0.200 | 5 | Additional genes in candidate G6798 (lsrK, b1511) -> autoinducer-2 kinase |
| Group 188 | Genes common to all candidates in group EG12766 (agaA, b3135) -> predicted truncated N-acetylgalactosamine-6-phosphate deacetylase EG11728 (yieK, b3718) -> predicted 6-phosphogluconolactonase EG10633 (nagB, b0678) -> NagB EG10632 (nagA, b0677) -> NagA | |||||
| Candidate 0612 | 0.999 | 6 | 0.400 | 5 | Additional genes in candidate EG10635 (nagE, b0679) -> NagE | |
| Candidate 0611 | 1.000 | 6 | 0.200 | 5 | Additional genes in candidate G7636 (agaI, b3141) -> predicted galactosamine-6-phosphate isomerase |
| Group 189 | Genes common to all candidates in group G7531 (yggW, b2955) -> predicted oxidoreductase G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein | |||||
| Candidate 0689 | 0.999 | 7 | 1.000 | 5 | Additional genes in candidate EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |
| Candidate 0690 | 0.999 | 7 | 1.000 | 5 | Additional genes in candidate EG10529 (lepA, b2569) -> elongation factor 4 |
| Group 190 | Candidate 0669 | 0.999 | 2 | 1.000 | 5 | Genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10346 (ftsY, b3464) -> SRP receptor EG10897 (rpoH, b3461) -> RNA polymerase, sigma 32 (sigma H) factor EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer |
| Group 191 | Candidate 0624 | 0.999 | 8 | 0.800 | 5 | Genes in candidate EG10543 (lpd, b0116) -> E3 monomer EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG11428 (sthA, b3962) -> SthA G6174 (ykgC, b0304) -> predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain |
| Group 192 | Candidate 0621 | 0.999 | 5 | 0.000 | 5 | Genes in candidate EG10563 (malX, b1621) -> MalX EG10635 (nagE, b0679) -> NagE EG10787 (ptsG, b1101) -> PtsG EG11709 (glvB, b3682) -> GlvB EG11710 (glvC, b3683) -> GlvC |
| Group 193 | Candidate 0538 | 0.999 | 7 | 0.400 | 5 | Genes in candidate EG11791 (cmtB, b2934) -> CmtB EG12494 (ulaB, b4194) -> UlaB EG12495 (ulaC, b4195) -> UlaC EG12554 (sgcA, b4302) -> SgcA G7856 (ulaA, b4193) -> UlaA |
| Group 194 | Candidate 0622 | 0.999 | 5 | 0.800 | 5 | Genes in candidate EG10554 (malE, b4034) -> MalE EG10555 (malF, b4033) -> MalF EG10556 (malG, b4032) -> MalG EG10565 (malZ, b0403) -> maltodextrin glucosidase EG11316 (malS, b3571) -> α-amylase |
| Group 195 | Candidate 0642 | 0.999 | 1 | 1.000 | 5 | Genes in candidate EG10425 (hdhA, b1619) -> HdhA EG10971 (srlD, b2705) -> SrlD EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase |
| Group 196 | Candidate 0717 | 0.999 | 5 | 1.000 | 5 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10206 (dapB, b0031) -> DapB EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins |
| Group 197 | Candidate 0699 | 0.999 | 2 | 0.200 | 5 | Genes in candidate EG10216 (dedA, b2317) -> conserved inner membrane protein EG11571 (yabI, b0065) -> conserved inner membrane protein EG11824 (yghB, b3009) -> conserved inner membrane protein EG12017 (yohD, b2136) -> conserved inner membrane protein G7609 (yqjA, b3095) -> conserved inner membrane protein |
| Group 198 | Candidate 0526 | 0.999 | 1 | 0.000 | 5 | Genes in candidate EG12587 (yjjL, b4356) -> L-galactonate MFS transporter EG12738 (exuT, b3093) -> ExuT hexuronate MFS transporter EG12760 (garP, b3127) -> YhaU MFS transporter EG20053 (dgoT, b3691) -> galactonate MFS transporter G7447 (gudP, b2789) -> YgcZ MFS transporter |
| Group 199 | Candidate 0651 | 0.999 | 1 | 1.000 | 5 | Genes in candidate EG10386 (glnH, b0811) -> GlnH EG10388 (glnP, b0810) -> GlnP EG10389 (glnQ, b0809) -> GlnQ EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily EG12662 (gltK, b0653) -> GltK |
| Group 200 | Candidate 0727 | 0.999 | 1 | 1.000 | 5 | Genes in candidate EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10889 (rpmE, b3936) -> 50S ribosomal subunit protein L31 |
| Group 201 | Candidate 0635 | 0.999 | 5 | 0.200 | 5 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C |
| Group 202 | Candidate 0554 | 0.999 | 4 | 0.600 | 5 | Genes in candidate EG11452 (rffD, b3787) -> UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG11456 (rffA, b3791) -> dTDP-4-oxo-6-deoxy-D-glucose transaminase EG12412 (rfbB, b2041) -> RmlB |
| Group 203 | Candidate 0668 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10746 (polA, b3863) -> DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12372 (ygdG, b2798) -> YgdG G6383 (nei, b0714) -> endonuclease VIII |
| Group 204 | Candidate 0578 | 0.999 | 1 | 0.200 | 5 | Genes in candidate EG10859 (rne, b1084) -> RNase E EG11299 (rng, b3247) -> ribonuclease G (RNAse G) monomer EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase |
| Group 205 | Candidate 0539 | 0.999 | 5 | 0.000 | 5 | Genes in candidate EG11748 (yadD, b0132) -> predicted transposase EG11750 (yhgA, b3411) -> predicted transposase EG12323 (yfaD, b2244) -> conserved protein G7197 (yfcI, b2305) -> conserved protein G7934 (yjiP, b4338) -> predicted transposase |
| Group 206 | Candidate 0607 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG10677 (oppD, b1246) -> OppD EG10720 (phnK, b4097) -> PhnK EG12040 (yejE, b2179) -> YejE |
| Group 207 | Candidate 0684 | 0.999 | 4 | 1.000 | 5 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10831 (recN, b2616) -> protein used in recombination and DNA repair G7352 (bamD, bamD) -> BamD |
| Group 208 | Candidate 0540 | 0.999 | 1 | 0.000 | 5 | Genes in candidate EG11725 (yieH, b3715) -> 6-phosphogluconate phosphatase G6655 (ycjU, b1317) -> β-phosphoglucomutase G6932 (yniC, b1727) -> 2-deoxyglucose-6-phosphatase G7187 (yfbT, b2293) -> sugar phosphatase G7408 (yqaB, b2690) -> fructose-1-phosphatase |
| Group 209 | Candidate 0694 | 0.999 | 4 | 0.000 | 5 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein |
| Group 210 | Candidate 0567 | 0.999 | 2 | 0.000 | 5 | Genes in candidate EG10991 (tdcC, b3116) -> TdcC threonine STP transporter EG12142 (sdaC, b2796) -> SdaC serine STP transporter EG12266 (yhjV, b3539) -> YhjV STP transporter EG12754 (yhaO, b3110) -> YhaO STP transporter G7465 (yqeG, b2845) -> YqeG STP transporter |
| Group 211 | Candidate 0741 | 0.999 | 11 | 1.000 | 5 | Genes in candidate EG10063 (argA, b2818) -> ArgA EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10068 (argG, b3172) -> ArgG EG11223 (argH, b3960) -> argininosuccinate lyase |
| Group 212 | Candidate 0516 | 0.999 | 4 | 0.600 | 5 | Genes in candidate G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage G7502 (guaD, b2883) -> guanine deaminase |
| Group 213 | Candidate 0533 | 0.999 | 1 | 0.600 | 5 | Genes in candidate EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG11908 (frwC, b3949) -> FrwC EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7990 (fruB, b2169) -> FruB |
| Group 214 | Candidate 0623 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10554 (malE, b4034) -> MalE EG10555 (malF, b4033) -> MalF EG10556 (malG, b4032) -> MalG EG10558 (malK, b4035) -> MalK G6656 (ycjV, b1318) -> predicted sugar transporter subunit: ATP-binding component of ABC superfamily |
| Group 215 | Candidate 0688 | 0.999 | 2 | 1.000 | 5 | Genes in candidate EG10258 (eno, b2779) -> Eno EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG11259 (rnr, b4179) -> RNase R EG11782 (smpB, b2620) -> small protein B EG12296 (gpmM, b3612) -> phosphoglycerate mutase, cofactor independent |
| Group 216 | Candidate 0659 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10359 (fur, b0683) -> Fur EG11734 (phoH, b1020) -> ATP-binding protein G6362 (ybeY, b0659) -> conserved protein involved in translation G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 217 | Candidate 0527 | 0.999 | 5 | 1.000 | 5 | Genes in candidate EG12494 (ulaB, b4194) -> UlaB G7855 (ulaG, b4192) -> L-ascorbate 6-phosphate lactonase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase |
| Group 218 | Candidate 0693 | 0.999 | 7 | 0.000 | 5 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11799 (hybA, b2996) -> hydrogenase 2 4Fe-4S ferredoxin-type component EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit |
| Group 219 | Candidate 0652 | 0.999 | 1 | 0.200 | 5 | Genes in candidate EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG10387 (glnL, b3869) -> NtrB EG10482 (zraR, b4004) -> ZraR-Phosphorylated transcriptional activator EG11285 (glrR, b2554) -> GlrR phosphorylated transcriptional activator EG11668 (atoC, b2220) -> AtoC-phosphorylated transcriptional activator |
| Group 220 | Candidate 0670 | 0.999 | 3 | 1.000 | 5 | Genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11447 (csrA, b2696) -> carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 |
| Group 221 | Candidate 0812 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG12232 (dtpB, b3496) -> DtpB dipeptide transporter EG12469 (yjdL, b4130) -> YjdL peptide transporter G6378 (dtpD, b0709) -> DtpD peptide POT Transporter G6877 (tppB, b1634) -> TppB peptide POT Transporter |
| Group 222 | Candidate 0943 | 1.000 | 1 | 0.500 | 4 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12360 (yfaE, b2236) -> 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance EG12381 (nrdF, b2676) -> NrdF |
| Group 223 | Candidate 1044 | 1.000 | 10 | 0.000 | 4 | Genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer EG12419 (gatY, b2096) -> GatY EG12768 (kbaY, b3137) -> KbaY G6960 (ydjI, b1773) -> predicted aldolase |
| Group 224 | Candidate 1026 | 1.000 | 3 | 0.000 | 4 | Genes in candidate EG10356 (fumA, b1612) -> fumarase A monomer EG10357 (fumB, b4122) -> fumarase B monomer EG11168 (ttdA, b3061) -> L-tartrate dehydratase, α subunit EG11169 (ttdB, b3062) -> L-tartrate dehydratase, β subunit |
| Group 225 | Candidate 0844 | 1.000 | 4 | 0.000 | 4 | Genes in candidate EG11556 (talB, b0008) -> transaldolase B EG11797 (talA, b2464) -> transaldolase A EG11905 (fsaB, b3946) -> fructose 6-phosphate aldolase 2 G6428 (fsaA, b0825) -> Fsa |
| Group 226 | Genes common to all candidates in group EG12148 (galP, b2943) -> GalP - galactose MFS transporter EG11566 (yaaU, b0045) -> YaaU EG10056 (araE, b2841) -> AraE arabinose MFS transporter | |||||
| Candidate 1116 | 1.000 | 3 | 0.250 | 4 | Additional genes in candidate EG11076 (xylE, b4031) -> XylE xylose MFS transporter | |
| Candidate 1115 | 0.999 | 3 | 0.500 | 4 | Additional genes in candidate EG12369 (ydjE, b1769) -> YdjE MFS transporter |
| Group 227 | Genes common to all candidates in group EG12462 (adiC, b4115) -> AdiC EG10753 (potE, b0692) -> putrescine/proton symporter: putrescine/ornithine antiporter EG10132 (cadB, b4132) -> CadB cadaverine/lysine APC exchanger | |||||
| Candidate 1094 | 0.999 | 1 | 0.000 | 4 | Additional genes in candidate EG12908 (frlA, b3370) -> predicted fructoselysine transporter | |
| Candidate 1093 | 1.000 | 7 | 0.000 | 4 | Additional genes in candidate G6861 (ydgI, b1605) -> ArcD APC transporter |
| Group 228 | Candidate 0893 | 0.999 | 2 | 1.000 | 4 | Genes in candidate EG10944 (serA, b2913) -> SerA EG12272 (ghrB, b3553) -> GhrB G0-9461 (pdxB, b2320) -> erythronate-4-phosphate dehydrogenase G592 (ldhA, b1380) -> D-lactate dehydrogenase |
| Group 229 | Candidate 0927 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG11827 (rpiB, b4090) -> allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer G6635 (yciO, b1267) -> conserved protein G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 230 | Candidate 0960 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10590 (metL, b3940) -> MetL EG10998 (thrA, b0002) -> ThrA EG10999 (thrB, b0003) -> ThrB EG11000 (thrC, b0004) -> threonine synthase |
| Group 231 | Genes common to all candidates in group G7437 (ygcS, b2771) -> YgcS MFS transporter EG12369 (ydjE, b1769) -> YdjE MFS transporter EG11566 (yaaU, b0045) -> YaaU | |||||
| Candidate 0843 | 0.999 | 3 | 0.250 | 4 | Additional genes in candidate EG12148 (galP, b2943) -> GalP - galactose MFS transporter | |
| Candidate 0841 | 0.999 | 3 | 0.000 | 4 | Additional genes in candidate G6962 (ydjK, b1775) -> predicted transporter |
| Group 232 | Genes common to all candidates in group G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex | |||||
| Candidate 0783 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate G6912 (ydiI, b1686) -> esterase | |
| Candidate 0782 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate G7334 (hcaC, b2540) -> 3-phenylpropionate dioxygenase, predicted ferredoxin subunit |
| Group 233 | Candidate 0860 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG11306 (lipA, b0628) -> lipoate synthase monomer EG11645 (ydeJ, b1537) -> conserved protein G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair G7409 (ygaD, b2700) -> conserved protein |
| Group 234 | Candidate 0875 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG11086 (ftsL, b0083) -> essential cell division protein FtsL EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB |
| Group 235 | Candidate 0873 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG11160 (mscS, b2924) -> MscS G6255 (kefA, b0465) -> KefA G6666 (ynaI, b1330) -> conserved inner membrane protein G7840 (yjeP, b4159) -> predicted mechanosensitive channel |
| Group 236 | Candidate 0859 | 0.999 | 2 | 1.000 | 4 | Genes in candidate EG11325 (acnA, b1276) -> aconitate hydratase 1 EG12053 (ccmG, b2195) -> CcmG EG12057 (ccmC, b2199) -> CcmC EG12059 (ccmA, b2201) -> CcmA |
| Group 237 | Candidate 0770 | 0.999 | 1 | 1.000 | 4 | Genes in candidate G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7496 (mocA, b2877) -> CTP:molybdopterin cytidylyltransferase |
| Group 238 | Candidate 0798 | 0.999 | 8 | 0.000 | 4 | Genes in candidate EG12475 (yjeM, b4156) -> YjeM APC transporter EG12720 (ygjI, b3078) -> YgjI APC transporter G6466 (ycaM, b0899) -> YcaM predicted APC amino acid transporter G6786 (gadC, b1492) -> GadC GABA APC transporter |
| Group 239 | Candidate 0956 | 0.999 | 1 | 0.250 | 4 | Genes in candidate EG10615 (mtlA, b3599) -> MtlA EG10616 (mtlD, b3600) -> mannitol-1-phosphate 5-dehydrogenase EG11792 (cmtA, b2933) -> CmtA G7990 (fruB, b2169) -> FruB |
| Group 240 | Candidate 0998 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG10427 (hemA, b1210) -> HemA EG10428 (hemB, b0369) -> porphobilinogen synthase EG10429 (hemC, b3805) -> hydroxymethylbilane synthase EG10432 (hemL, b0154) -> glutamate-1-semialdehyde aminotransferase |
| Group 241 | Candidate 1043 | 0.999 | 1 | 0.000 | 4 | Genes in candidate EG10301 (fhlA, b2731) -> FhlA transcriptional activator EG12108 (norR, b2709) -> NorR transcriptional dual regulator EG12344 (pspF, b1303) -> PspF transcriptional dual regulator G7308 (hyfR, b2491) -> HyfR transcriptional activator |
| Group 242 | Candidate 0811 | 0.999 | 1 | 0.250 | 4 | Genes in candidate EG12235 (arsR, b3501) -> ArsR EG12236 (arsB, b3502) -> ArsB G7374 (ypjM_3, b2639) -> CP4-57 prophage; predicted inner membrane protein G7375 (ypjM_2, b2640) -> CP4-57 prophage; predicted protein |
| Group 243 | Candidate 0920 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10805 (pyrB, b4245) -> aspartate carbamoyltransferase, PyrB subunit G6281 (allB, b0512) -> allantoinase monomer G7492 (hyuA, b2873) -> phenylhydantoinase monomer G7925 (iadA, b4328) -> IadA |
| Group 244 | Candidate 0851 | 0.999 | 4 | 1.000 | 4 | Genes in candidate EG11473 (ubiE, b3833) -> bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase EG11476 (ubiB, b3835) -> 2-octaprenylphenol hydroxylase EG11676 (hslV, b3932) -> peptidase component of the HslVU protease EG11881 (hslU, b3931) -> ATPase component of the HslVU protease |
| Group 245 | Candidate 1053 | 0.999 | 6 | 0.500 | 4 | Genes in candidate EG10260 (entB, b0595) -> EntB EG11135 (pncA, b1768) -> pyrazinamidase / nicotinamidase EG12378 (yecD, b1867) -> predicted hydrolase G6522 (rutB, b1011) -> peroxyureidoacrylate / ureidoacrylate amido hydrolase |
| Group 246 | Candidate 0962 | 0.999 | 3 | 1.000 | 4 | Genes in candidate EG10586 (metG, b2114) -> methionyl-tRNA synthetase EG10611 (mrp, b2113) -> putative ATPase EG11418 (dcd, b2065) -> Dcd G7597 (ygjH, b3074) -> putative tRNA synthetase |
| Group 247 | Candidate 0888 | 0.999 | 3 | 1.000 | 4 | Genes in candidate EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG11428 (sthA, b3962) -> SthA G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain |
| Group 248 | Genes common to all candidates in group G7554 (hybO, b2997) -> hydrogenase 2, small subunit EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11800 (hybB, b2995) -> predicted hydrogenase 2 cytochrome b type component | |||||
| Candidate 0826 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate EG11799 (hybA, b2996) -> hydrogenase 2 4Fe-4S ferredoxin-type component | |
| Candidate 0825 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 |
| Group 249 | Candidate 1071 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10219 (deoA, b4382) -> DeoA EG10220 (deoB, b4383) -> phosphopentomutase G7732 (yhfW, b3380) -> predicted mutase G85 (xapA, b2407) -> XapA |
| Group 250 | Candidate 1029 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10346 (ftsY, b3464) -> SRP receptor EG10786 (ptrA, b2821) -> protease III EG11744 (pqqL, b1494) -> putative zinc peptidase |
| Group 251 | Candidate 0832 | 0.999 | 2 | 0.500 | 4 | Genes in candidate EG11736 (gmhB, b0200) -> D,D-heptose 1,7-bisphosphate phosphatase EG12780 (diaA, b3149) -> DnaA initiator-associating factor for replication initiation G6106 (lpcA, b0222) -> D-sedoheptulose 7-phosphate isomerase G7590 (rfaE, b3052) -> fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |