| Num Enr Orgs (#Enr) | >= | 10 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10766 (secY, b3300) -> SecY EG10360 (fusA, b3340) -> elongation factor G | |||||
| Candidate 0003 | 1.000 | 240 | 1.000 | 28 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 | |
| Candidate 0002 | 1.000 | 247 | 1.000 | 29 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 | |
| Candidate 0001 | 1.000 | 261 | 1.000 | 32 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 | |
| Candidate 0000 | 1.000 | 281 | 0.951 | 41 | Additional genes in candidate EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 002 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G366 (flgJ, b1081) -> FlgJ G365 (flgI, b1080) -> flagellar P-ring protein FlgI G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0009 | 0.999 | 130 | 1.000 | 24 | Additional genes in candidate EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0010 | 0.999 | 118 | 1.000 | 24 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0011 | 0.999 | 120 | 1.000 | 23 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0008 | 0.999 | 132 | 0.960 | 25 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0006 | 0.999 | 144 | 0.962 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0005 | 0.999 | 165 | 0.846 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0004 | 0.999 | 154 | 0.963 | 27 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ | |
| Candidate 0007 | 0.999 | 145 | 0.962 | 26 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ |
| Group 003 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7301 (hyfD, b2484) -> hydrogenase 4, component D EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0015 | 1.000 | 178 | 0.571 | 21 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E | |
| Candidate 0014 | 1.000 | 179 | 0.571 | 21 | Additional genes in candidate G7303 (hyfF, b2486) -> hydrogenase 4, component F |
| Group 004 | Candidate 0017 | 1.000 | 199 | 1.000 | 21 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 005 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF G7340 (yphD, b2546) -> YphD EG12520 (ytfT, b4230) -> YtfT EG12518 (ytfR, b4228 (obsolete)) -> YtfR EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG11959 (alsA, b4087) -> AlsA EG11958 (alsC, b4086) -> AlsC EG10817 (rbsD, b3748) -> ribose pyranase EG10816 (rbsC, b3750) -> RbsC EG10815 (rbsB, b3751) -> RbsB EG10814 (rbsA, b3749) -> RbsA EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) | |||||
| Candidate 0013 | 0.999 | 79 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH EG20252 (xylF, b3566) -> XylF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC | |
| Candidate 0012 | 0.999 | 77 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7341 (yphE, b2547) -> YphE | |
| Candidate 0016 | 0.999 | 70 | 0.048 | 21 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G6802 (lsrD, b1515) -> LsrD G7341 (yphE, b2547) -> YphE | |
| Candidate 0018 | 0.999 | 70 | 0.150 | 20 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG12275 (xylG, b3567) -> XylG G6800 (lsrA, b1513) -> LsrA G7341 (yphE, b2547) -> YphE | |
| Candidate 0036 | 0.999 | 50 | 0.250 | 16 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG20252 (xylF, b3566) -> XylF G6515 (torT, b0994) -> TorT-TMAO | |
| Candidate 0033 | 0.999 | 51 | 0.235 | 17 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase G6515 (torT, b0994) -> TorT-TMAO G7341 (yphE, b2547) -> YphE |
| Group 006 | Genes common to all candidates in group EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10455 (hlpA, b0178) -> periplasmic chaperone EG10570 (map, b0168) -> methionine aminopeptidase EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase G6093 (bamA, bamA) -> BamA | |||||
| Candidate 0024 | 1.000 | 146 | 1.000 | 18 | Additional genes in candidate EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ | |
| Candidate 0023 | 1.000 | 131 | 0.944 | 18 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0047 | 1.000 | 70 | 1.000 | 14 | Additional genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit |
| Group 007 | Genes common to all candidates in group EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0035 | 0.999 | 127 | 1.000 | 16 | Additional genes in candidate EG10151 (cheZ, b1881) -> CheZ EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |
| Candidate 0031 | 0.999 | 148 | 1.000 | 17 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0032 | 0.999 | 137 | 1.000 | 17 | Additional genes in candidate EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10151 (cheZ, b1881) -> CheZ |
| Group 008 | Genes common to all candidates in group EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG11198 (glmU, b3730) -> GlmU | |||||
| Candidate 0025 | 0.999 | 154 | 1.000 | 18 | Additional genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10382 (glmS, b3729) -> GlmS EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor | |
| Candidate 0019 | 0.999 | 152 | 1.000 | 19 | Additional genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor | |
| Candidate 0080 | 1.000 | 28 | 1.000 | 12 | Additional genes in candidate EG10106 (atpI, b3739) -> AtpI |
| Group 009 | Genes common to all candidates in group EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase | |||||
| Candidate 0021 | 1.000 | 117 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0020 | 1.000 | 97 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0022 | 1.000 | 110 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG11086 (ftsL, b0083) -> essential cell division protein FtsL | |
| Candidate 0029 | 0.999 | 90 | 1.000 | 17 | Additional genes in candidate EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0030 | 1.000 | 104 | 1.000 | 17 | Additional genes in candidate EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0038 | 1.000 | 136 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0049 | 0.999 | 66 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0048 | 0.999 | 51 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0040 | 1.000 | 80 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0039 | 1.000 | 65 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0076 | 1.000 | 41 | 0.833 | 12 | Additional genes in candidate EG10213 (ddlA, b0381) -> D-alanine-D-alanine ligase A EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW |
| Group 010 | Genes common to all candidates in group EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7664 (lptC, b3199) -> LptC G7665 (lptA, b3200) -> LptA | |||||
| Candidate 0027 | 0.999 | 51 | 0.882 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr | |
| Candidate 0026 | 0.999 | 38 | 1.000 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12802 (yrbG, b3196) -> YrbG CaCA transporter | |
| Candidate 0061 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG11652 (degS, b3235) -> DegS serine endoprotease |
| Group 011 | Genes common to all candidates in group EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12606 (fabF, b1095) -> FabF EG12302 (tmk, b1098) -> dTMP kinase EG11500 (holB, b1099) -> DNA polymerase III, δ prime subunit EG11494 (yceG, b1097) -> predicted aminodeoxychorismate lyase EG11493 (pabC, b1096) -> pabC EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11119 (yceD, b1088) -> conserved protein EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG10859 (rne, b1084) -> RNase E | |||||
| Candidate 0041 | 0.999 | 61 | 1.000 | 14 | Additional genes in candidate EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase | |
| Candidate 0037 | 0.999 | 69 | 1.000 | 15 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG11438 (yceF, b1087) -> predicted protein |
| Group 012 | Genes common to all candidates in group EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0045 | 0.999 | 94 | 1.000 | 14 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0079 | 0.999 | 103 | 1.000 | 12 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0059 | 0.999 | 79 | 1.000 | 13 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0028 | 0.999 | 140 | 0.765 | 17 | Additional genes in candidate EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0034 | 0.999 | 125 | 0.937 | 16 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 013 | Candidate 0044 | 1.000 | 81 | 0.786 | 14 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10942 (selB, b3590) -> selenocysteyl-tRNA-specific translation elongation factor EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 014 | Genes common to all candidates in group G6093 (bamA, bamA) -> BamA EG11647 (accA, b0185) -> acetyl-CoA carboxyltransferase, α subunit EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11284 (fabZ, b0180) -> FabZ EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10570 (map, b0168) -> methionine aminopeptidase EG10546 (lpxB, b0182) -> LpxB EG10545 (lpxA, b0181) -> LpxA EG10455 (hlpA, b0178) -> periplasmic chaperone EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit | |||||
| Candidate 0046 | 0.999 | 92 | 1.000 | 14 | Additional genes in candidate EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG12715 (dxr, b0173) -> Dxr | |
| Candidate 0075 | 0.999 | 58 | 1.000 | 12 | Additional genes in candidate G6096 (tilS, b0188) -> tRNAIle-lysidine synthetase |
| Group 015 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6779 (ddpC, b1485) -> YddQ G6432 (gsiD, b0832) -> GsiD G6431 (gsiC, b0831) -> GsiC G2001 (sapB, b1293) -> SapB G2000 (sapC, b1292) -> SapC EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0056 | 0.999 | 59 | 0.077 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB | |
| Candidate 0055 | 0.999 | 58 | 0.000 | 13 | Additional genes in candidate G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS | |
| Candidate 0057 | 0.999 | 59 | 0.154 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G2002 (sapA, b1294) -> SapA | |
| Candidate 0058 | 0.999 | 62 | 0.000 | 13 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS |
| Group 016 | Genes common to all candidates in group EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit | |||||
| Candidate 0043 | 0.999 | 98 | 0.429 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0042 | 1.000 | 104 | 0.286 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0173 | 0.999 | 29 | 0.556 | 9 | Additional genes in candidate EG11803 (hybE, b2992) -> hydrogenase 2-specific chaperone |
| Group 017 | Candidate 0063 | 1.000 | 20 | 0.667 | 12 | Genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11151 (raiA, b2597) -> stationary phase translation inhibitor and ribosome stability factor EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11864 (frvA, b3900) -> FrvA EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7665 (lptA, b3200) -> LptA |
| Group 018 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0053 | 1.000 | 82 | 0.231 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0052 | 1.000 | 89 | 0.385 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0070 | 1.000 | 59 | 0.083 | 12 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0121 | 1.000 | 44 | 0.100 | 10 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E |
| Group 019 | Candidate 0060 | 1.000 | 45 | 0.667 | 12 | Genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G357 (flgA, b1072) -> flagellar biosynthesis; assembly of basal-body periplasmic P ring G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ |
| Group 020 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF EG12520 (ytfT, b4230) -> YtfT EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG12276 (xylH, b3568) -> XylH EG12275 (xylG, b3567) -> XylG EG11959 (alsA, b4087) -> AlsA EG10814 (rbsA, b3749) -> RbsA EG10594 (mglC, b2148) -> MglC EG10593 (mglB, b2150) -> MglB EG10592 (mglA, b2149) -> MglA | |||||
| Candidate 0069 | 0.999 | 37 | 0.417 | 12 | Additional genes in candidate EG20252 (xylF, b3566) -> XylF | |
| Candidate 0068 | 0.999 | 35 | 0.333 | 12 | Additional genes in candidate G7341 (yphE, b2547) -> YphE |
| Group 021 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10815 (rbsB, b3751) -> RbsB EG10816 (rbsC, b3750) -> RbsC EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG11958 (alsC, b4086) -> AlsC EG12028 (yeiI, b2160) -> predicted kinase | |||||
| Candidate 0051 | 0.999 | 42 | 0.231 | 13 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0050 | 0.999 | 36 | 0.231 | 13 | Additional genes in candidate EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0064 | 0.999 | 30 | 0.333 | 12 | Additional genes in candidate EG12517 (ytfQ, b4227) -> YtfQ G6515 (torT, b0994) -> TorT-TMAO G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0065 | 0.999 | 28 | 0.500 | 12 | Additional genes in candidate EG10819 (rbsR, b3753) -> RbsR transcriptional repressor G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0112 | 0.999 | 14 | 0.500 | 10 | Additional genes in candidate EG11848 (yihV, b3883) -> predicted sugar kinase G6959 (ydjH, b1772) -> predicted kinase |
| Group 022 | Genes common to all candidates in group EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI G6752 (ydcT, b1441) -> YdcT G6753 (ydcU, b1442) -> YdcU | |||||
| Candidate 0067 | 1.000 | 44 | 0.000 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG11629 (potF, b0854) -> PotF G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0066 | 1.000 | 51 | 0.083 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0113 | 1.000 | 22 | 0.100 | 10 | Additional genes in candidate EG11572 (thiQ, b0066) -> SfuC EG11629 (potF, b0854) -> PotF |
| Group 023 | Genes common to all candidates in group EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11591 (lipB, b0630) -> lipoyl-protein ligase EG11592 (ybeD, b0631) -> conserved protein | |||||
| Candidate 0101 | 0.999 | 28 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0100 | 0.999 | 20 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0099 | 0.999 | 26 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0098 | 0.999 | 19 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0078 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG12851 (ybeL, b0643) -> conserved protein |
| Group 024 | Candidate 0086 | 1.000 | 141 | 0.909 | 11 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12095 (secG, b3175) -> SecG |
| Group 025 | Candidate 0106 | 1.000 | 46 | 0.818 | 11 | Genes in candidate EG10123 (birA, birA) -> bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 026 | Candidate 0095 | 0.999 | 13 | 0.818 | 11 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase |
| Group 027 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10151 (cheZ, b1881) -> CheZ EG10150 (cheY, b1882) -> CheY-acetylated EG10149 (cheW, b1887) -> CheW EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10147 (cheB, b1883) -> CheB-Pasp EG10146 (cheA, b1888) -> CheA(S) | |||||
| Candidate 0105 | 0.999 | 13 | 1.000 | 11 | Additional genes in candidate EG10319 (flhC, b1891) -> FlhC EG10320 (flhD, b1892) -> FlhD | |
| Candidate 0104 | 0.999 | 39 | 1.000 | 11 | Additional genes in candidate EG10324 (fliN, b1946) -> flagellar motor switch protein FliN G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA |
| Group 028 | Genes common to all candidates in group EG10723 (phnN, b4094) -> ribose 1,5-bisphosphokinase EG10722 (phnM, b4095) -> ATP-binding component of phosphonate transport EG10720 (phnK, b4097) -> PhnK EG10719 (phnJ, b4098) -> carbon-phosphorous lyase complex subunit EG10718 (phnI, b4099) -> carbon-phosphorus lyase complex subunit EG10717 (phnH, b4100) -> carbon-phosphorous lyase complex subunit EG10716 (phnG, b4101) -> carbon-phosphorous lyase complex subunit EG10715 (phnF, b4102) -> PhnF transcriptional regulator EG10714 (phnD, b4105) -> PhnD EG10713 (phnC, b4106) -> PhnC | |||||
| Candidate 0084 | 0.999 | 16 | 1.000 | 11 | Additional genes in candidate EG10721 (phnL, b4096) -> PhnL | |
| Candidate 0083 | 0.999 | 15 | 1.000 | 11 | Additional genes in candidate EG11283 (phnE, b4104) -> PhnE |
| Group 029 | Candidate 0081 | 0.999 | 11 | 0.000 | 11 | Genes in candidate G6134 (insH-1, b0259) -> IS5 transposase and trans-activator G6308 (insH-2, b0552) -> IS5 transposase and trans-activator G6360 (insH-3, b0656) -> IS5 transposase and trans-activator G6667 (insH-4, b1331) -> IS5 transposase and trans-activator G6693 (insH-5, b1370) -> IS5 transposase and trans-activator G7074 (insH-6, b1994) -> IS5 transposase and trans-activator G7092 (insH-7, b2030) -> IS5 transposase and trans-activator G7150 (insH-8, b2192) -> IS5 transposase and trans-activator G7548 (insH-9, b2982) -> IS5 transposase and trans-activator G7672 (insH-10, b3218) -> IS5 transposase and trans-activator G7769 (insH-11, b3505) -> IS5 transposase and trans-activator |
| Group 030 | Genes common to all candidates in group G7842 (orn, b4162) -> oligoribonuclease monomer EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11281 (mutL, b4170) -> MutL EG10595 (miaA, b4171) -> tRNA(i6A37) synthase EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10436 (hflK, b4174) -> regulator of FtsH protease EG10435 (hflC, b4175) -> regulator of FtsH protease | |||||
| Candidate 0087 | 0.999 | 20 | 1.000 | 11 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme EG11758 (yjeF, b4167) -> predicted carbohydrate kinase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0054 | 0.999 | 50 | 0.769 | 13 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG11758 (yjeF, b4167) -> predicted carbohydrate kinase EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0123 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0122 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A |
| Group 031 | Genes common to all candidates in group G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG11328 (fdx, b2525) -> oxidized ferredoxin | |||||
| Candidate 0108 | 0.999 | 25 | 1.000 | 11 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10983 (suhB, b2533) -> inositol monophosphatase EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0062 | 0.999 | 42 | 0.667 | 12 | Additional genes in candidate EG10983 (suhB, b2533) -> inositol monophosphatase EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12309 (yjtD, b4403) -> predicted rRNA methyltransferase G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0156 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10650 (ndk, b2518) -> Ndk G7321 (yfgM, b2513) -> conserved protein | |
| Candidate 0155 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7321 (yfgM, b2513) -> conserved protein |
| Group 032 | Genes common to all candidates in group EG12794 (yhbY, b3180) -> predicted RNA-binding protein EG12095 (secG, b3175) -> SecG EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11179 (rimP, b3170) -> ribosome maturation protein EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10505 (infB, b3168) -> protein chain initiation factor IF-2 | |||||
| Candidate 0089 | 0.999 | 59 | 1.000 | 11 | Additional genes in candidate EG10415 (greA, b3181) -> transcription elongation factor GreA EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11553 (glmM, b3176) -> phosphoglucosamine mutase | |
| Candidate 0090 | 0.999 | 55 | 1.000 | 11 | Additional genes in candidate EG10415 (greA, b3181) -> transcription elongation factor GreA EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11553 (glmM, b3176) -> phosphoglucosamine mutase | |
| Candidate 0088 | 0.999 | 52 | 1.000 | 11 | Additional genes in candidate EG10415 (greA, b3181) -> transcription elongation factor GreA EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG50011 (folP, b3177) -> FolP | |
| Candidate 0119 | 0.999 | 47 | 1.000 | 10 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase |
| Group 033 | Genes common to all candidates in group EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11908 (frwC, b3949) -> FrwC EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS | |||||
| Candidate 0091 | 1.000 | 48 | 0.091 | 11 | Additional genes in candidate EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS G7990 (fruB, b2169) -> FruB | |
| Candidate 0071 | 1.000 | 46 | 0.000 | 12 | Additional genes in candidate EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11864 (frvA, b3900) -> FrvA EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS | |
| Candidate 0176 | 0.999 | 43 | 0.000 | 9 | Additional genes in candidate EG10615 (mtlA, b3599) -> MtlA G7990 (fruB, b2169) -> FruB |
| Group 034 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G2002 (sapA, b1294) -> SapA G2001 (sapB, b1293) -> SapB EG12627 (dppD, b3541) -> DppD EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0097 | 1.000 | 33 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G2000 (sapC, b1292) -> SapC | |
| Candidate 0096 | 0.999 | 35 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO | |
| Candidate 0144 | 0.999 | 35 | 0.200 | 10 | Additional genes in candidate EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0145 | 1.000 | 25 | 0.300 | 10 | Additional genes in candidate EG12305 (sapF, b1290) -> SapF G2000 (sapC, b1292) -> SapC G6430 (gsiB, b0830) -> GsiB |
| Group 035 | Candidate 0158 | 1.000 | 13 | 0.100 | 10 | Genes in candidate EG10014 (acrD, b2470) -> AcrD EG10266 (acrE, b3265) -> transmembrane protein affects septum formation and cell membrane permeability EG10267 (acrF, b3266) -> AcrF EG11703 (acrA, b0463) -> AcrA membrane fusion protein EG11704 (acrB, b0462) -> AcrB RND-type permease EG11741 (envR, b3264) -> EnvR DNA binding transcriptional repressor EG12116 (acrR, b0464) -> AcrR transcriptional repressor EG12240 (mdtE, b3513) -> MdtE EG12241 (mdtF, b3514) -> MdtF G6320 (cusC, b0572) -> outer membrane factor of the CusCFBA copper/silver efflux system |
| Group 036 | Candidate 0110 | 1.000 | 22 | 0.600 | 10 | Genes in candidate EG11948 (nrfE, b4074) -> formate-dependent nitrite reductase; possible assembly function EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex EG11950 (nrfG, b4076) -> NrfG EG12052 (ccmH, b2194) -> CcmH EG12053 (ccmG, b2195) -> CcmG EG12054 (ccmF, b2196) -> cytochrome c-type biogenesis protein EG12055 (ccmE, b2197) -> CcmE EG12057 (ccmC, b2199) -> CcmC EG12058 (ccmB, b2200) -> CcmB EG12059 (ccmA, b2201) -> CcmA |
| Group 037 | Candidate 0116 | 1.000 | 19 | 0.000 | 10 | Genes in candidate EG10638 (narG, b1224) -> nitrate reductase A, α subunit EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10640 (narI, b1227) -> nitrate reductase A, γ subunit EG10641 (narJ, b1226) -> molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter EG10644 (narV, b1465) -> nitrate reductase Z, γ subunit EG10645 (narW, b1466) -> NarW, probable private chaperone for NarZ nitrate reductase subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit EG10648 (narZ, b1468) -> nitrate reductase Z, α subunit EG12153 (narU, b1469) -> NarU MFS nitrate/nitrite antiporter |
| Group 038 | Genes common to all candidates in group G6185 (yahF, b0320) -> predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10980 (sucB, b0727) -> SucB EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10932 (sdhB, b0724) -> succinate dehydrogenase iron-sulfur protein EG10931 (sdhA, b0723) -> succinate dehydrogenase flavoprotein | |||||
| Candidate 0208 | 1.000 | 37 | 0.750 | 8 | Additional genes in candidate G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants | |
| Candidate 0072 | 1.000 | 74 | 0.583 | 12 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10402 (gltA, b0720) -> citrate synthase monomer EG10933 (sdhC, b0721) -> succinate dehydrogenase membrane protein EG10934 (sdhD, b0722) -> succinate dehydrogenase membrane protein |
| Group 039 | Candidate 0153 | 1.000 | 49 | 0.900 | 10 | Genes in candidate EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10770 (proS, b0194) -> prolyl-tRNA synthetase EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase |
| Group 040 | Candidate 0111 | 0.999 | 15 | 0.900 | 10 | Genes in candidate EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG11652 (degS, b3235) -> DegS serine endoprotease EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7682 (degQ, b3234) -> serine endoprotease, periplasmic |
| Group 041 | Genes common to all candidates in group EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10602 (motB, b1889) -> MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0103 | 0.999 | 34 | 1.000 | 11 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0185 | 0.999 | 14 | 1.000 | 9 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0186 | 0.999 | 33 | 1.000 | 9 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0085 | 0.999 | 85 | 0.727 | 11 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G361 (flgE, b1076) -> flagellar hook protein FlgE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0151 | 0.999 | 53 | 1.000 | 10 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 042 | Genes common to all candidates in group EG10684 (pal, b0741) -> Pal EG11008 (tolB, b0740) -> TolB EG11010 (tolQ, b0737) -> TolQ EG11011 (tolR, b0738) -> TolR EG11110 (ybgC, b0736) -> esterase/thioesterase EG12854 (ybgF, b0742) -> predicted periplasmic protein | |||||
| Candidate 0140 | 1.000 | 45 | 0.900 | 10 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase | |
| Candidate 0114 | 1.000 | 43 | 1.000 | 10 | Additional genes in candidate EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair EG11137 (yebC, b1864) -> conserved protein RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase | |
| Candidate 0241 | 1.000 | 19 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10272 (exbD, b3005) -> ExbD uptake of enterochelin; tonB-dependent uptake of B colicins |
| Group 043 | Genes common to all candidates in group EG10353 (fucR, b2805) -> FucR transcriptional activator EG10974 (srlR, b2707) -> GutR transcriptional repressor EG12162 (gatR_2, b2090) -> GatR_2 G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7630 (agaR, b3131) -> AgaR transcriptional repressor G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism | |||||
| Candidate 0175 | 0.999 | 12 | 0.000 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator | |
| Candidate 0174 | 0.999 | 10 | 0.111 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G7854 (ulaR, b4191) -> UlaR transcriptional repressor | |
| Candidate 0124 | 0.999 | 19 | 0.000 | 10 | Additional genes in candidate EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator |
| Group 044 | Candidate 0179 | 1.000 | 15 | 0.000 | 9 | Genes in candidate EG10250 (dsdX, b2365) -> DsdX Gnt tranporter EG12152 (idnK, b4268) -> D-gluconate kinase, thermosensitive EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter EG12539 (idnT, b4265) -> L-idonate / 5-ketogluconate / gluconate transporter EG12548 (yjhF, b4296) -> YjhF Gnt tranporter EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter EG12629 (gntK, b3437) -> GntK EG12631 (gntU, b3435 (obsolete)) -> GntU gluconate Gnt transporter G7421 (ygbN, b2740) -> YgbN Gnt transporter |
| Group 045 | Candidate 0193 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 046 | Candidate 0189 | 1.000 | 13 | 1.000 | 9 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10382 (glmS, b3729) -> GlmS EG11198 (glmU, b3730) -> GlmU G7723 (frlB, b3371) -> fructoselysine 6-phosphate deglycase monomer |
| Group 047 | Candidate 0164 | 0.999 | 18 | 0.111 | 9 | Genes in candidate EG10993 (tdh, b3616) -> Tdh EG12417 (gatD, b2091) -> galactitol-1-phosphate dehydrogenase G6651 (ycjQ, b1313) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6838 (rspB, b1580) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6961 (ydjJ, b1774) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6963 (ydjL, b1776) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7339 (yphC, b2545) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7893 (idnD, b4267) -> L-idonate 5-dehydrogenase G7945 (yjjN, b4358) -> predicted L-galactonate oxidoreductase |
| Group 048 | Candidate 0166 | 0.999 | 14 | 0.111 | 9 | Genes in candidate EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF EG12079 (nikE, b3480) -> NikE EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6778 (ddpD, b1484) -> YddP |
| Group 049 | Candidate 0190 | 0.999 | 10 | 1.000 | 9 | Genes in candidate EG10073 (aroA, b0908) -> 3-phosphoshikimate-1-carboxyvinyltransferase EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10441 (ihfB, b0912) -> integration host factor (IHF), β subunit EG10707 (pheA, b2599) -> PheA EG10900 (rpsA, b0911) -> 30S ribosomal subunit protein S1 EG10946 (serC, b0907) -> SerC EG11143 (ubiG, b2232) -> UbiG EG11265 (cmk, b0910) -> cytidylate kinase EG12691 (yciM, b1280) -> conserved protein |
| Group 050 | Genes common to all candidates in group G6781 (ddpA, b1487) -> YddS G6432 (gsiD, b0832) -> GsiD G6430 (gsiB, b0830) -> GsiB EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG12075 (nikA, b3476) -> NikA EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0181 | 0.999 | 17 | 0.111 | 9 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC | |
| Candidate 0180 | 0.999 | 18 | 0.111 | 9 | Additional genes in candidate G2002 (sapA, b1294) -> SapA |
| Group 051 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10150 (cheY, b1882) -> CheY-acetylated EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10146 (cheA, b1888) -> CheA(S) | |||||
| Candidate 0188 | 0.999 | 37 | 1.000 | 9 | Additional genes in candidate EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching | |
| Candidate 0187 | 0.999 | 38 | 1.000 | 9 | Additional genes in candidate G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB |
| Group 052 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0120 | 0.999 | 45 | 0.700 | 10 | Additional genes in candidate EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) | |
| Candidate 0217 | 0.999 | 57 | 0.750 | 8 | Additional genes in candidate EG10496 (ilvD, b3771) -> IlvD EG11577 (leuB, b0073) -> LeuB | |
| Candidate 0172 | 1.000 | 74 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10496 (ilvD, b3771) -> IlvD G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0170 | 1.000 | 58 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0218 | 1.000 | 45 | 0.750 | 8 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) |
| Group 053 | Genes common to all candidates in group G6141 (yagF, b0269) -> CP4-6 prophage; predicted dehydratase EG11583 (gcl, b0507) -> Gcl EG10500 (ilvI, b0077) -> IlvI EG10499 (ilvH, brnP) -> IlvH EG10496 (ilvD, b3771) -> IlvD EG10494 (ilvB, b3671) -> IlvB | |||||
| Candidate 0169 | 0.999 | 77 | 0.667 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11577 (leuB, b0073) -> LeuB G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0168 | 0.999 | 69 | 0.556 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0171 | 0.999 | 70 | 0.778 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0244 | 0.999 | 66 | 0.625 | 8 | Additional genes in candidate EG10257 (edd, b1851) -> phosphogluconate dehydratase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase |
| Group 054 | Genes common to all candidates in group EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G6922 (ydiS, b1699) -> putative flavoprotein G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain | |||||
| Candidate 0163 | 0.999 | 26 | 0.000 | 9 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin | |
| Candidate 0162 | 0.999 | 27 | 0.111 | 9 | Additional genes in candidate EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin G7433 (ygcO, b2767) -> predicted 4Fe-4S cluster-containing protein | |
| Candidate 0203 | 1.000 | 25 | 0.000 | 8 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G7435 (ygcQ, b2769) -> predicted flavoprotein |
| Group 055 | Genes common to all candidates in group G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG10004 (dfp, b3639) -> Dfp | |||||
| Candidate 0197 | 0.999 | 20 | 0.667 | 9 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |
| Candidate 0196 | 0.999 | 17 | 0.667 | 9 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |
| Candidate 0254 | 0.999 | 11 | 0.750 | 8 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11440 (def, b3287) -> peptide deformylase EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |
| Candidate 0358 | 0.999 | 10 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10965 (gmk, b3648) -> Gmk G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A |
| Group 056 | Candidate 0204 | 1.000 | 19 | 0.625 | 8 | Genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly G7454 (csdA, b2810) -> cysteine sulfinate desulfinase |
| Group 057 | Candidate 0220 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 058 | Candidate 0212 | 1.000 | 25 | 0.250 | 8 | Genes in candidate EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component G7990 (fruB, b2169) -> FruB |
| Group 059 | Candidate 0250 | 1.000 | 24 | 1.000 | 8 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 060 | Candidate 0255 | 1.000 | 12 | 0.500 | 8 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10251 (dut, b3640) -> Dut EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG11312 (yicR, b3638) -> hypothetical protein G6122 (ykfG, b0247) -> CP4-6 prophage; predicted DNA repair protein G7082 (yeeS, b2002) -> CP4-44 prophage; predicted DNA repair protein G7379 (yfjY, b2644) -> CP4-57 prophage; predicted DNA repair protein |
| Group 061 | Candidate 0202 | 1.000 | 15 | 0.000 | 8 | Genes in candidate EG11677 (modF, b0760) -> ModF EG11767 (yhhJ, b3485) -> predicted transporter subunit: membrane component of ABC superfamily EG12223 (rbbA, b3486) -> ribosome-associated ATPase EG12224 (yhiI, b3487) -> predicted HlyD family secretion protein G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 062 | Genes common to all candidates in group EG10288 (fecC, b4289) -> FecC EG10289 (fecD, b4288) -> FecD EG10290 (fecE, b4287) -> FecE EG10295 (fepC, b0588) -> FepC EG10296 (fepD, b0590) -> FepD EG10298 (fepG, b0589) -> FepG | |||||
| Candidate 0236 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10294 (fepB, b0592) -> FepB EG10304 (fhuC, b0151) -> FhuC | |
| Candidate 0235 | 0.999 | 15 | 0.375 | 8 | Additional genes in candidate EG10303 (fhuB, b0153) -> FhuB EG10304 (fhuC, b0151) -> FhuC | |
| Candidate 0237 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10287 (fecB, b4290) -> FecB EG10303 (fhuB, b0153) -> FhuB |
| Group 063 | Candidate 0200 | 0.999 | 19 | 0.375 | 8 | Genes in candidate G6155 (yagR, b0284) -> aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit G6156 (yagS, b0285) -> aldehyde ferredoxin oxidoreductase, FAD-binding subunit G6157 (yagT, b0286) -> aldehyde ferredoxin oxidoreductase, Fe-S subunit G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage |
| Group 064 | Genes common to all candidates in group EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12606 (fabF, b1095) -> FabF EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP | |||||
| Candidate 0239 | 1.000 | 13 | 1.000 | 8 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0205 | 0.999 | 12 | 1.000 | 8 | Additional genes in candidate EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0323 | 1.000 | 15 | 1.000 | 7 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG10857 (rnc, b2567) -> RNase III |
| Group 065 | Candidate 0307 | 1.000 | 12 | 1.000 | 7 | Genes in candidate EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase |
| Group 066 | Candidate 0335 | 1.000 | 10 | 0.714 | 7 | Genes in candidate EG10158 (clpP, b0437) -> ClpP EG10159 (clpX, b0438) -> ClpX EG10466 (hupA, b4000) -> transcriptional dual regulator HU-α (HU-2) EG10467 (hupB, b0440) -> transcriptional dual regulator HU-β, NS1 (HU-1) EG10542 (lon, b0439) -> Lon EG11003 (tig, b0436) -> trigger factor; a molecular chaperone involved in cell division G6242 (ppiD, b0441) -> periplasmic folding helper protein |
| Group 067 | Candidate 0297 | 1.000 | 13 | 0.714 | 7 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites G6871 (rsxA, b1627) -> integral membrane protein of SoxR-reducing complex G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6873 (rsxC, b1629) -> member of SoxR-reducing complex G6874 (rsxD, b1630) -> integral membrane protein of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex G6876 (rsxE, b1632) -> integral membrane protein of SoxR-reducing complex |
| Group 068 | Candidate 0343 | 0.999 | 26 | 0.143 | 7 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G6861 (ydgI, b1605) -> ArcD APC transporter G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |
| Group 069 | Candidate 0304 | 0.999 | 29 | 0.000 | 7 | Genes in candidate EG10567 (manX, b1817) -> ManX EG10568 (manY, b1818) -> ManY EG10569 (manZ, b1819) -> ManZ EG12769 (agaB, b3138) -> AgaB EG12770 (agaC, b3139) -> AgaC G7632 (agaV, b3133) -> PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) G7635 (agaD, b3140) -> AgaD |
| Group 070 | Candidate 0312 | 0.999 | 11 | 0.143 | 7 | Genes in candidate EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10481 (hycH, b2718) -> protein required for maturation of hydrogenase 3 G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7306 (hyfI, b2489) -> hydrogenase 4, small subunit |
| Group 071 | Genes common to all candidates in group EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10066 (argD, b3359) -> ArgD G6944 (astC, b1748) -> AstC G7596 (ygjG, b3073) -> putrescine aminotransferase / diamine transaminase | |||||
| Candidate 0345 | 0.999 | 24 | 0.714 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10068 (argG, b3172) -> ArgG | |
| Candidate 0344 | 0.999 | 21 | 0.429 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI | |
| Candidate 0346 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10063 (argA, b2818) -> ArgA EG10068 (argG, b3172) -> ArgG |
| Group 072 | Candidate 0322 | 0.999 | 10 | 1.000 | 7 | Genes in candidate EG10277 (fabH, b1091) -> FabH EG10859 (rne, b1084) -> RNase E EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12606 (fabF, b1095) -> FabF G6567 (nagZ, b1107) -> β-N-acetylhexosaminidase |
| Group 073 | Candidate 0313 | 0.999 | 20 | 0.429 | 7 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C |
| Group 074 | Candidate 0317 | 0.999 | 31 | 0.714 | 7 | Genes in candidate EG10377 (glgA, b3429) -> glycogen synthase EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10379 (glgC, b3430) -> GlgC EG10380 (glgP, b3428) -> GlgP EG10381 (glgX, b3431) -> glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase EG10560 (malP, blu) -> maltodextrin phosphorylase monomer EG10561 (malQ, b3416) -> amylomaltase |
| Group 075 | Candidate 0326 | 0.999 | 11 | 1.000 | 7 | Genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10686 (parC, b3019) -> topoisomerase IV subunit A EG10687 (parE, b3030) -> topoisomerase IV subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding |
| Group 076 | Candidate 0327 | 0.999 | 11 | 0.000 | 7 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit EG11946 (nrfC, b4072) -> formate-dependent nitrite reductase, 4Fe-4S subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6899 (ydhX, b1671) -> predicted 4Fe-4S ferredoxin-type protein G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein |
| Group 077 | Genes common to all candidates in group EG11787 (gmd, b2053) -> GDP-mannose 4,6-dehydratase EG11978 (rfbA, b2039) -> dTDP-glucose pyrophosphorylase EG11979 (rfbC, b2038) -> dTDP-4-dehydrorhamnose 3,5-epimerase EG12411 (rfbD, b2040) -> dTDP-4-dehydrorhamnose reductase | |||||
| Candidate 0269 | 1.000 | 32 | 0.429 | 7 | Additional genes in candidate EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0334 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0479 | 0.999 | 16 | 1.000 | 6 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11788 (fcl, b2052) -> Fcl |
| Group 078 | Genes common to all candidates in group G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase G7856 (ulaA, b4193) -> UlaA EG12495 (ulaC, b4195) -> UlaC EG12494 (ulaB, b4194) -> UlaB | |||||
| Candidate 0262 | 0.999 | 13 | 0.429 | 7 | Additional genes in candidate EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase | |
| Candidate 0373 | 0.999 | 12 | 1.000 | 6 | Additional genes in candidate G7855 (ulaG, b4192) -> L-ascorbate 6-phosphate lactonase |
| Group 079 | Genes common to all candidates in group G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase | |||||
| Candidate 0347 | 0.999 | 19 | 0.000 | 7 | Additional genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase | |
| Candidate 0376 | 0.999 | 14 | 0.333 | 6 | Additional genes in candidate EG12494 (ulaB, b4194) -> UlaB |
| Group 080 | Genes common to all candidates in group EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I EG11580 (ybiB, b0800) -> predicted transferase/phosphorylase | |||||
| Candidate 0406 | 0.999 | 10 | 1.000 | 6 | Additional genes in candidate EG10683 (pabB, b1812) -> PabB EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0393 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0296 | 0.999 | 18 | 1.000 | 7 | Additional genes in candidate EG10682 (pabA, b3360) -> PabA EG10683 (pabB, b1812) -> PabB EG12362 (menF, b2265) -> MenF |
| Group 081 | Candidate 0411 | 1.000 | 13 | 0.500 | 6 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12381 (nrdF, b2676) -> NrdF EG20257 (nrdE, b2675) -> NrdE G7401 (nrdH, b2673) -> glutaredoxin-like protein G7402 (nrdI, b2674) -> flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase |
| Group 082 | Candidate 0382 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G7435 (ygcQ, b2769) -> predicted flavoprotein G7436 (ygcR, b2770) -> predicted flavoprotein |
| Group 083 | Candidate 0418 | 1.000 | 18 | 0.000 | 6 | Genes in candidate EG10578 (melB, b4120) -> MelB GPH transporter EG11658 (uidB, b1616) -> UidB glucuronides GPH transporter EG11686 (yicJ, b3657) -> YicJ GPH transporter EG11841 (yihO, b3876) -> YihO GPH transporter EG11842 (yihP, b3877) -> YihP GPH transporter G6142 (yagG, b0270) -> YagG GPH Transporter |
| Group 084 | Genes common to all candidates in group EG11153 (rimM, b2608) -> ribosome maturation protein EG11023 (trmD, b2607) -> TrmD EG10915 (rpsP, b2609) -> 30S ribosomal subunit protein S16 EG10880 (rplS, b2606) -> 50S ribosomal subunit protein L19 EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) | |||||
| Candidate 0453 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10346 (ftsY, b3464) -> SRP receptor | |
| Candidate 0452 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10857 (rnc, b2567) -> RNase III |
| Group 085 | Candidate 0439 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10404 (gltD, b3213) -> glutamate synthase, small subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit G7145 (yeiT, b2146) -> NADH-dependent dihydropyrimidine dehydrogenase subunit G7497 (ygfK, b2878) -> putative oxidoreductase Fe-S subunit; possible component of selenate reductase G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit |
| Group 086 | Genes common to all candidates in group EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10543 (lpd, b0116) -> E3 monomer | |||||
| Candidate 0420 | 1.000 | 15 | 0.833 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants | |
| Candidate 0446 | 0.999 | 22 | 1.000 | 6 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10980 (sucB, b0727) -> SucB | |
| Candidate 0421 | 0.999 | 17 | 1.000 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6174 (ykgC, b0304) -> predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain | |
| Candidate 0422 | 0.999 | 13 | 0.833 | 6 | Additional genes in candidate EG10576 (mdh, b3236) -> Mdh G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 087 | Candidate 0427 | 0.999 | 10 | 0.000 | 6 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11552 (hydN, b2713) -> putative electron transport protein HydN EG12277 (ysaA, b3573) -> predicted hydrogenase, 4Fe-4S ferredoxin-type component G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein G7505 (ygfS, b2886) -> predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit |
| Group 088 | Candidate 0743 | 1.000 | 11 | 0.000 | 5 | Genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG10348 (fucA, b2800) -> FucA EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase G7419 (ygbL, b2738) -> predicted class II aldolase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase |
| Group 089 | Candidate 0705 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG10206 (dapB, b0031) -> DapB EG10637 (nanA, b3225) -> NanA G6140 (yagE, b0268) -> CP4-6 prophage; predicted lyase/synthase G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 090 | Candidate 0714 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10165 (crr, b2417) -> Crr EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component |
| Group 091 | Candidate 0741 | 0.999 | 11 | 1.000 | 5 | Genes in candidate EG10063 (argA, b2818) -> ArgA EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10068 (argG, b3172) -> ArgG EG11223 (argH, b3960) -> argininosuccinate lyase |
| Group 092 | Candidate 1044 | 1.000 | 10 | 0.000 | 4 | Genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer EG12419 (gatY, b2096) -> GatY EG12768 (kbaY, b3137) -> KbaY G6960 (ydjI, b1773) -> predicted aldolase |