| Num Enr Orgs (#Enr) | >= | 0 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10766 (secY, b3300) -> SecY EG10360 (fusA, b3340) -> elongation factor G | |||||
| Candidate 0003 | 1.000 | 240 | 1.000 | 28 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 | |
| Candidate 0002 | 1.000 | 247 | 1.000 | 29 | Additional genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 | |
| Candidate 0001 | 1.000 | 261 | 1.000 | 32 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 | |
| Candidate 0000 | 1.000 | 281 | 0.951 | 41 | Additional genes in candidate EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 002 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G366 (flgJ, b1081) -> FlgJ G365 (flgI, b1080) -> flagellar P-ring protein FlgI G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0009 | 0.999 | 130 | 1.000 | 24 | Additional genes in candidate EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0010 | 0.999 | 118 | 1.000 | 24 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10322 (fliL, b1944) -> flagellar biosynthesis EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0011 | 0.999 | 120 | 1.000 | 23 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0008 | 0.999 | 132 | 0.960 | 25 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0006 | 0.999 | 144 | 0.962 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0005 | 0.999 | 165 | 0.846 | 26 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0004 | 0.999 | 154 | 0.963 | 27 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ | |
| Candidate 0007 | 0.999 | 145 | 0.962 | 26 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ |
| Group 003 | Candidate 0017 | 1.000 | 199 | 1.000 | 21 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 004 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7301 (hyfD, b2484) -> hydrogenase 4, component D EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0015 | 1.000 | 178 | 0.571 | 21 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E | |
| Candidate 0014 | 1.000 | 179 | 0.571 | 21 | Additional genes in candidate G7303 (hyfF, b2486) -> hydrogenase 4, component F |
| Group 005 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF G7340 (yphD, b2546) -> YphD EG12520 (ytfT, b4230) -> YtfT EG12518 (ytfR, b4228 (obsolete)) -> YtfR EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG11959 (alsA, b4087) -> AlsA EG11958 (alsC, b4086) -> AlsC EG10817 (rbsD, b3748) -> ribose pyranase EG10816 (rbsC, b3750) -> RbsC EG10815 (rbsB, b3751) -> RbsB EG10814 (rbsA, b3749) -> RbsA EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) | |||||
| Candidate 0013 | 0.999 | 79 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH EG20252 (xylF, b3566) -> XylF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC | |
| Candidate 0012 | 0.999 | 77 | 0.091 | 22 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG12275 (xylG, b3567) -> XylG EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7341 (yphE, b2547) -> YphE | |
| Candidate 0016 | 0.999 | 70 | 0.048 | 21 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG12276 (xylH, b3568) -> XylH G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G6802 (lsrD, b1515) -> LsrD G7341 (yphE, b2547) -> YphE | |
| Candidate 0018 | 0.999 | 70 | 0.150 | 20 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG12275 (xylG, b3567) -> XylG G6800 (lsrA, b1513) -> LsrA G7341 (yphE, b2547) -> YphE | |
| Candidate 0036 | 0.999 | 50 | 0.250 | 16 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG20252 (xylF, b3566) -> XylF G6515 (torT, b0994) -> TorT-TMAO | |
| Candidate 0033 | 0.999 | 51 | 0.235 | 17 | Additional genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase G6515 (torT, b0994) -> TorT-TMAO G7341 (yphE, b2547) -> YphE |
| Group 006 | Genes common to all candidates in group EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10455 (hlpA, b0178) -> periplasmic chaperone EG10570 (map, b0168) -> methionine aminopeptidase EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase G6093 (bamA, bamA) -> BamA | |||||
| Candidate 0024 | 1.000 | 146 | 1.000 | 18 | Additional genes in candidate EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ | |
| Candidate 0023 | 1.000 | 131 | 0.944 | 18 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG11284 (fabZ, b0180) -> FabZ G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0047 | 1.000 | 70 | 1.000 | 14 | Additional genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit |
| Group 007 | Genes common to all candidates in group EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0035 | 0.999 | 127 | 1.000 | 16 | Additional genes in candidate EG10151 (cheZ, b1881) -> CheZ EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |
| Candidate 0031 | 0.999 | 148 | 1.000 | 17 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0032 | 0.999 | 137 | 1.000 | 17 | Additional genes in candidate EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10151 (cheZ, b1881) -> CheZ |
| Group 008 | Genes common to all candidates in group EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase | |||||
| Candidate 0021 | 1.000 | 117 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0020 | 1.000 | 97 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0022 | 1.000 | 110 | 1.000 | 18 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG11086 (ftsL, b0083) -> essential cell division protein FtsL | |
| Candidate 0030 | 1.000 | 104 | 1.000 | 17 | Additional genes in candidate EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0029 | 0.999 | 90 | 1.000 | 17 | Additional genes in candidate EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11084 (mraZ, b0081) -> conserved protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0038 | 1.000 | 136 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0049 | 0.999 | 66 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0048 | 0.999 | 51 | 1.000 | 14 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0040 | 1.000 | 80 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein | |
| Candidate 0039 | 1.000 | 65 | 1.000 | 15 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |
| Candidate 0076 | 1.000 | 41 | 0.833 | 12 | Additional genes in candidate EG10213 (ddlA, b0381) -> D-alanine-D-alanine ligase A EG10214 (ddlB, b0092) -> ddlB EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW |
| Group 009 | Genes common to all candidates in group EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7664 (lptC, b3199) -> LptC G7665 (lptA, b3200) -> LptA | |||||
| Candidate 0027 | 0.999 | 51 | 0.882 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr | |
| Candidate 0026 | 0.999 | 38 | 1.000 | 17 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG11680 (lptB, b3201) -> LptB EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12802 (yrbG, b3196) -> YrbG CaCA transporter | |
| Candidate 0061 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG11652 (degS, b3235) -> DegS serine endoprotease |
| Group 010 | Genes common to all candidates in group EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit | |||||
| Candidate 0080 | 1.000 | 28 | 1.000 | 12 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10106 (atpI, b3739) -> AtpI EG11198 (glmU, b3730) -> GlmU | |
| Candidate 0107 | 0.999 | 7 | 1.000 | 11 | Additional genes in candidate EG10106 (atpI, b3739) -> AtpI EG11199 (mioC, b3742) -> flavoprotein involved in biotin synthesis | |
| Candidate 0025 | 0.999 | 154 | 1.000 | 18 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10382 (glmS, b3729) -> GlmS EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11198 (glmU, b3730) -> GlmU | |
| Candidate 0019 | 0.999 | 152 | 1.000 | 19 | Additional genes in candidate EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11198 (glmU, b3730) -> GlmU |
| Group 011 | Genes common to all candidates in group EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12606 (fabF, b1095) -> FabF EG12302 (tmk, b1098) -> dTMP kinase EG11500 (holB, b1099) -> DNA polymerase III, δ prime subunit EG11494 (yceG, b1097) -> predicted aminodeoxychorismate lyase EG11493 (pabC, b1096) -> pabC EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11119 (yceD, b1088) -> conserved protein EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG10859 (rne, b1084) -> RNase E | |||||
| Candidate 0041 | 0.999 | 61 | 1.000 | 14 | Additional genes in candidate EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase | |
| Candidate 0037 | 0.999 | 69 | 1.000 | 15 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG11438 (yceF, b1087) -> predicted protein |
| Group 012 | Genes common to all candidates in group EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0045 | 0.999 | 94 | 1.000 | 14 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0079 | 0.999 | 103 | 1.000 | 12 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0059 | 0.999 | 79 | 1.000 | 13 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0034 | 0.999 | 125 | 0.937 | 16 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0028 | 0.999 | 140 | 0.765 | 17 | Additional genes in candidate EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 013 | Candidate 0044 | 1.000 | 81 | 0.786 | 14 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10942 (selB, b3590) -> selenocysteyl-tRNA-specific translation elongation factor EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 014 | Genes common to all candidates in group G6093 (bamA, bamA) -> BamA EG11647 (accA, b0185) -> acetyl-CoA carboxyltransferase, α subunit EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11284 (fabZ, b0180) -> FabZ EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG10570 (map, b0168) -> methionine aminopeptidase EG10546 (lpxB, b0182) -> LpxB EG10545 (lpxA, b0181) -> LpxA EG10455 (hlpA, b0178) -> periplasmic chaperone EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit | |||||
| Candidate 0046 | 0.999 | 92 | 1.000 | 14 | Additional genes in candidate EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG12715 (dxr, b0173) -> Dxr | |
| Candidate 0075 | 0.999 | 58 | 1.000 | 12 | Additional genes in candidate G6096 (tilS, b0188) -> tRNAIle-lysidine synthetase |
| Group 015 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6779 (ddpC, b1485) -> YddQ G6432 (gsiD, b0832) -> GsiD G6431 (gsiC, b0831) -> GsiC G2001 (sapB, b1293) -> SapB G2000 (sapC, b1292) -> SapC EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0056 | 0.999 | 59 | 0.077 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB | |
| Candidate 0055 | 0.999 | 58 | 0.000 | 13 | Additional genes in candidate G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS | |
| Candidate 0057 | 0.999 | 59 | 0.154 | 13 | Additional genes in candidate EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G2002 (sapA, b1294) -> SapA | |
| Candidate 0058 | 0.999 | 62 | 0.000 | 13 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC G6430 (gsiB, b0830) -> GsiB G6781 (ddpA, b1487) -> YddS |
| Group 016 | Genes common to all candidates in group EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit | |||||
| Candidate 0043 | 0.999 | 98 | 0.429 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0042 | 1.000 | 104 | 0.286 | 14 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase | |
| Candidate 0173 | 0.999 | 29 | 0.556 | 9 | Additional genes in candidate EG11803 (hybE, b2992) -> hydrogenase 2-specific chaperone |
| Group 017 | Genes common to all candidates in group G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0053 | 1.000 | 82 | 0.231 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0052 | 1.000 | 89 | 0.385 | 13 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0070 | 1.000 | 59 | 0.083 | 12 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7301 (hyfD, b2484) -> hydrogenase 4, component D G7305 (hyfH, b2488) -> hydrogenase 4, component H | |
| Candidate 0121 | 1.000 | 44 | 0.100 | 10 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E |
| Group 018 | Candidate 0060 | 1.000 | 45 | 0.667 | 12 | Genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G357 (flgA, b1072) -> flagellar biosynthesis; assembly of basal-body periplasmic P ring G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ |
| Group 019 | Genes common to all candidates in group G7342 (yphF, b2548) -> YphF EG12520 (ytfT, b4230) -> YtfT EG12517 (ytfQ, b4227) -> YtfQ EG12439 (yjfF, b4231) -> YjfF EG12276 (xylH, b3568) -> XylH EG12275 (xylG, b3567) -> XylG EG11959 (alsA, b4087) -> AlsA EG10814 (rbsA, b3749) -> RbsA EG10594 (mglC, b2148) -> MglC EG10593 (mglB, b2150) -> MglB EG10592 (mglA, b2149) -> MglA | |||||
| Candidate 0069 | 0.999 | 37 | 0.417 | 12 | Additional genes in candidate EG20252 (xylF, b3566) -> XylF | |
| Candidate 0068 | 0.999 | 35 | 0.333 | 12 | Additional genes in candidate G7341 (yphE, b2547) -> YphE |
| Group 020 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10815 (rbsB, b3751) -> RbsB EG10816 (rbsC, b3750) -> RbsC EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG11958 (alsC, b4086) -> AlsC EG12028 (yeiI, b2160) -> predicted kinase | |||||
| Candidate 0051 | 0.999 | 42 | 0.231 | 13 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0050 | 0.999 | 36 | 0.231 | 13 | Additional genes in candidate EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0064 | 0.999 | 30 | 0.333 | 12 | Additional genes in candidate EG12517 (ytfQ, b4227) -> YtfQ G6515 (torT, b0994) -> TorT-TMAO G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0065 | 0.999 | 28 | 0.500 | 12 | Additional genes in candidate EG10819 (rbsR, b3753) -> RbsR transcriptional repressor G6959 (ydjH, b1772) -> predicted kinase G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0112 | 0.999 | 14 | 0.500 | 10 | Additional genes in candidate EG11848 (yihV, b3883) -> predicted sugar kinase G6959 (ydjH, b1772) -> predicted kinase |
| Group 021 | Genes common to all candidates in group EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI G6752 (ydcT, b1441) -> YdcT G6753 (ydcU, b1442) -> YdcU | |||||
| Candidate 0067 | 1.000 | 44 | 0.000 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG11629 (potF, b0854) -> PotF G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0066 | 1.000 | 51 | 0.083 | 12 | Additional genes in candidate EG10752 (potD, b1123) -> PotD EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6751 (ydcS, b1440) -> YdcS G6754 (ydcV, b1443) -> YdcV | |
| Candidate 0113 | 1.000 | 22 | 0.100 | 10 | Additional genes in candidate EG11572 (thiQ, b0066) -> SfuC EG11629 (potF, b0854) -> PotF |
| Group 022 | Genes common to all candidates in group EG11592 (ybeD, b0631) -> conserved protein EG11591 (lipB, b0630) -> lipoyl-protein ligase EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11255 (ybeB, b0637) -> predicted protein EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 | |||||
| Candidate 0101 | 0.999 | 28 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0100 | 0.999 | 20 | 0.727 | 11 | Additional genes in candidate EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0099 | 0.999 | 26 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b | |
| Candidate 0098 | 0.999 | 19 | 0.818 | 11 | Additional genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0078 | 0.999 | 10 | 1.000 | 12 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11306 (lipA, b0628) -> lipoate synthase monomer EG12851 (ybeL, b0643) -> conserved protein | |
| Candidate 0077 | 0.999 | 6 | 1.000 | 12 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG12851 (ybeL, b0643) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase |
| Group 023 | Candidate 0106 | 1.000 | 46 | 0.818 | 11 | Genes in candidate EG10123 (birA, birA) -> bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 024 | Candidate 0086 | 1.000 | 141 | 0.909 | 11 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12095 (secG, b3175) -> SecG |
| Group 025 | Genes common to all candidates in group G7665 (lptA, b3200) -> LptA G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11680 (lptB, b3201) -> LptB EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor | |||||
| Candidate 0118 | 0.999 | 5 | 1.000 | 10 | Additional genes in candidate EG10610 (mreD, b3249) -> MreD | |
| Candidate 0063 | 1.000 | 20 | 0.667 | 12 | Additional genes in candidate EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase EG11151 (raiA, b2597) -> stationary phase translation inhibitor and ribosome stability factor EG11864 (frvA, b3900) -> FrvA |
| Group 026 | Genes common to all candidates in group EG10415 (greA, b3181) -> transcription elongation factor GreA EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12095 (secG, b3175) -> SecG EG12794 (yhbY, b3180) -> predicted RNA-binding protein | |||||
| Candidate 0089 | 0.999 | 59 | 1.000 | 11 | Additional genes in candidate EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH | |
| Candidate 0090 | 0.999 | 55 | 1.000 | 11 | Additional genes in candidate EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase | |
| Candidate 0088 | 0.999 | 52 | 1.000 | 11 | Additional genes in candidate EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG50011 (folP, b3177) -> FolP |
| Group 027 | Genes common to all candidates in group G7842 (orn, b4162) -> oligoribonuclease monomer EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11281 (mutL, b4170) -> MutL EG10595 (miaA, b4171) -> tRNA(i6A37) synthase EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10436 (hflK, b4174) -> regulator of FtsH protease EG10435 (hflC, b4175) -> regulator of FtsH protease | |||||
| Candidate 0087 | 0.999 | 20 | 1.000 | 11 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme EG11758 (yjeF, b4167) -> predicted carbohydrate kinase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0054 | 0.999 | 50 | 0.769 | 13 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG11758 (yjeF, b4167) -> predicted carbohydrate kinase EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase G7843 (yjeS, b4166) -> predicted Fe-S electron transport protein | |
| Candidate 0123 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0122 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10775 (psd, b4160) -> phosphatidylserine decarboxylase, proenzyme G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A |
| Group 028 | Genes common to all candidates in group EG10723 (phnN, b4094) -> ribose 1,5-bisphosphokinase EG10722 (phnM, b4095) -> ATP-binding component of phosphonate transport EG10720 (phnK, b4097) -> PhnK EG10719 (phnJ, b4098) -> carbon-phosphorous lyase complex subunit EG10718 (phnI, b4099) -> carbon-phosphorus lyase complex subunit EG10717 (phnH, b4100) -> carbon-phosphorous lyase complex subunit EG10716 (phnG, b4101) -> carbon-phosphorous lyase complex subunit EG10715 (phnF, b4102) -> PhnF transcriptional regulator EG10714 (phnD, b4105) -> PhnD EG10713 (phnC, b4106) -> PhnC | |||||
| Candidate 0084 | 0.999 | 16 | 1.000 | 11 | Additional genes in candidate EG10721 (phnL, b4096) -> PhnL | |
| Candidate 0083 | 0.999 | 15 | 1.000 | 11 | Additional genes in candidate EG11283 (phnE, b4104) -> PhnE |
| Group 029 | Candidate 0081 | 0.999 | 11 | 0.000 | 11 | Genes in candidate G6134 (insH-1, b0259) -> IS5 transposase and trans-activator G6308 (insH-2, b0552) -> IS5 transposase and trans-activator G6360 (insH-3, b0656) -> IS5 transposase and trans-activator G6667 (insH-4, b1331) -> IS5 transposase and trans-activator G6693 (insH-5, b1370) -> IS5 transposase and trans-activator G7074 (insH-6, b1994) -> IS5 transposase and trans-activator G7092 (insH-7, b2030) -> IS5 transposase and trans-activator G7150 (insH-8, b2192) -> IS5 transposase and trans-activator G7548 (insH-9, b2982) -> IS5 transposase and trans-activator G7672 (insH-10, b3218) -> IS5 transposase and trans-activator G7769 (insH-11, b3505) -> IS5 transposase and trans-activator |
| Group 030 | Candidate 0082 | 0.999 | 1 | 1.000 | 11 | Genes in candidate EG10776 (pspA, b1304) -> regulatory protein for the phage shock protein operon EG10777 (pspB, b1305) -> stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair EG10778 (pspC, b1306) -> PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12344 (pspF, b1303) -> PspF transcriptional dual regulator EG12870 (ycjF, b1322) -> conserved inner membrane protein G2000 (sapC, b1292) -> SapC G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA G6659 (ycjX, b1321) -> conserved protein |
| Group 031 | Candidate 0095 | 0.999 | 13 | 0.818 | 11 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase |
| Group 032 | Genes common to all candidates in group G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG11328 (fdx, b2525) -> oxidized ferredoxin | |||||
| Candidate 0108 | 0.999 | 25 | 1.000 | 11 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10983 (suhB, b2533) -> inositol monophosphatase EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0062 | 0.999 | 42 | 0.667 | 12 | Additional genes in candidate EG10983 (suhB, b2533) -> inositol monophosphatase EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12309 (yjtD, b4403) -> predicted rRNA methyltransferase G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly | |
| Candidate 0156 | 0.999 | 17 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10650 (ndk, b2518) -> Ndk G7321 (yfgM, b2513) -> conserved protein | |
| Candidate 0155 | 0.999 | 16 | 1.000 | 10 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G7321 (yfgM, b2513) -> conserved protein |
| Group 033 | Genes common to all candidates in group EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11908 (frwC, b3949) -> FrwC EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS | |||||
| Candidate 0071 | 1.000 | 46 | 0.000 | 12 | Additional genes in candidate EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11864 (frvA, b3900) -> FrvA EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS | |
| Candidate 0091 | 1.000 | 48 | 0.091 | 11 | Additional genes in candidate EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS G7990 (fruB, b2169) -> FruB | |
| Candidate 0176 | 0.999 | 43 | 0.000 | 9 | Additional genes in candidate EG10615 (mtlA, b3599) -> MtlA G7990 (fruB, b2169) -> FruB |
| Group 034 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G2002 (sapA, b1294) -> SapA G2001 (sapB, b1293) -> SapB EG12627 (dppD, b3541) -> DppD EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0097 | 1.000 | 33 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G2000 (sapC, b1292) -> SapC | |
| Candidate 0096 | 0.999 | 35 | 0.273 | 11 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO | |
| Candidate 0144 | 0.999 | 35 | 0.200 | 10 | Additional genes in candidate EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0145 | 1.000 | 25 | 0.300 | 10 | Additional genes in candidate EG12305 (sapF, b1290) -> SapF G2000 (sapC, b1292) -> SapC G6430 (gsiB, b0830) -> GsiB |
| Group 035 | Genes common to all candidates in group G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10320 (flhD, b1892) -> FlhD EG10319 (flhC, b1891) -> FlhC EG10151 (cheZ, b1881) -> CheZ EG10150 (cheY, b1882) -> CheY-acetylated EG10149 (cheW, b1887) -> CheW EG10147 (cheB, b1883) -> CheB-Pasp EG10146 (cheA, b1888) -> CheA(S) | |||||
| Candidate 0152 | 0.999 | 5 | 1.000 | 10 | Additional genes in candidate EG10602 (motB, b1889) -> MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall | |
| Candidate 0105 | 0.999 | 13 | 1.000 | 11 | Additional genes in candidate EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor |
| Group 036 | Genes common to all candidates in group EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7638 (yraI, b3143) -> predicted pilin chaperone | |||||
| Candidate 0132 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0093 | 0.999 | 3 | 0.000 | 11 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) EG10313 (fimF, b4318) -> fimbrial morphology G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0138 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein | |
| Candidate 0135 | 0.999 | 3 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6795 (ydeT, b1505) -> predicted protein G7585 (yqiG, b3046) -> putative membrane protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein | |
| Candidate 0129 | 0.999 | 3 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0128 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0136 | 0.999 | 3 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0134 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |
| Candidate 0139 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0137 | 0.999 | 2 | 0.100 | 10 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0131 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0130 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment | |
| Candidate 0074 | 0.999 | 7 | 0.000 | 12 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD EG11988 (yehB, b2109) -> putative outer membrane usher protein EG11989 (yehC, b2110) -> putative fimbrial chaperone EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0073 | 0.999 | 7 | 0.000 | 12 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD EG11988 (yehB, b2109) -> putative outer membrane usher protein EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0092 | 0.999 | 5 | 0.000 | 11 | Additional genes in candidate EG11972 (htrE, b0139) -> putative outer membrane usher protein EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6795 (ydeT, b1505) -> predicted protein G7639 (yraJ, b3144) -> predicted outer membrane export usher protein |
| Group 037 | Genes common to all candidates in group EG10270 (era, b2566) -> GTP-binding protein EG10529 (lepA, b2569) -> elongation factor 4 EG10530 (lepB, b2568) -> leader peptidase (signal peptidase I) EG10832 (recO, b2565) -> protein interacts with RecR and possibly RecF proteins EG10857 (rnc, b2567) -> RNase III EG11897 (rpoE, b2573) -> RNA polymerase, sigma 24 (sigma E) factor EG12341 (rseA, b2572) -> anti-sigma factor G7348 (rseB, b2571) -> rseB | |||||
| Candidate 0141 | 0.999 | 1 | 1.000 | 10 | Additional genes in candidate EG10631 (nadB, b2574) -> L-aspartate oxidase G7510 (ygfY, b2897) -> conserved protein | |
| Candidate 0094 | 0.999 | 0 | 1.000 | 11 | Additional genes in candidate EG10631 (nadB, b2574) -> L-aspartate oxidase EG10693 (pdxJ, b2564) -> PdxJ G7347 (rseC, b2570) -> SoxR and Sigma-E factor regulatory protein RseC | |
| Candidate 0146 | 1.000 | 2 | 1.000 | 10 | Additional genes in candidate EG10247 (acpS, b2563) -> AcpS EG10693 (pdxJ, b2564) -> PdxJ |
| Group 038 | Genes common to all candidates in group RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair EG12854 (ybgF, b0742) -> predicted periplasmic protein EG11110 (ybgC, b0736) -> esterase/thioesterase EG11011 (tolR, b0738) -> TolR EG11010 (tolQ, b0737) -> TolQ EG11008 (tolB, b0740) -> TolB EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair EG10684 (pal, b0741) -> Pal | |||||
| Candidate 0114 | 1.000 | 43 | 1.000 | 10 | Additional genes in candidate EG11137 (yebC, b1864) -> conserved protein | |
| Candidate 0140 | 1.000 | 45 | 0.900 | 10 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins |
| Group 039 | Candidate 0110 | 1.000 | 22 | 0.600 | 10 | Genes in candidate EG11948 (nrfE, b4074) -> formate-dependent nitrite reductase; possible assembly function EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex EG11950 (nrfG, b4076) -> NrfG EG12052 (ccmH, b2194) -> CcmH EG12053 (ccmG, b2195) -> CcmG EG12054 (ccmF, b2196) -> cytochrome c-type biogenesis protein EG12055 (ccmE, b2197) -> CcmE EG12057 (ccmC, b2199) -> CcmC EG12058 (ccmB, b2200) -> CcmB EG12059 (ccmA, b2201) -> CcmA |
| Group 040 | Candidate 0158 | 1.000 | 13 | 0.100 | 10 | Genes in candidate EG10014 (acrD, b2470) -> AcrD EG10266 (acrE, b3265) -> transmembrane protein affects septum formation and cell membrane permeability EG10267 (acrF, b3266) -> AcrF EG11703 (acrA, b0463) -> AcrA membrane fusion protein EG11704 (acrB, b0462) -> AcrB RND-type permease EG11741 (envR, b3264) -> EnvR DNA binding transcriptional repressor EG12116 (acrR, b0464) -> AcrR transcriptional repressor EG12240 (mdtE, b3513) -> MdtE EG12241 (mdtF, b3514) -> MdtF G6320 (cusC, b0572) -> outer membrane factor of the CusCFBA copper/silver efflux system |
| Group 041 | Genes common to all candidates in group G6185 (yahF, b0320) -> predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10980 (sucB, b0727) -> SucB EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10932 (sdhB, b0724) -> succinate dehydrogenase iron-sulfur protein EG10931 (sdhA, b0723) -> succinate dehydrogenase flavoprotein | |||||
| Candidate 0072 | 1.000 | 74 | 0.583 | 12 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10402 (gltA, b0720) -> citrate synthase monomer EG10933 (sdhC, b0721) -> succinate dehydrogenase membrane protein EG10934 (sdhD, b0722) -> succinate dehydrogenase membrane protein | |
| Candidate 0208 | 1.000 | 37 | 0.750 | 8 | Additional genes in candidate G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 042 | Genes common to all candidates in group EG10638 (narG, b1224) -> nitrate reductase A, α subunit EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10640 (narI, b1227) -> nitrate reductase A, γ subunit EG10641 (narJ, b1226) -> molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter EG10645 (narW, b1466) -> NarW, probable private chaperone for NarZ nitrate reductase subunit EG10648 (narZ, b1468) -> nitrate reductase Z, α subunit EG12153 (narU, b1469) -> NarU MFS nitrate/nitrite antiporter | |||||
| Candidate 0116 | 1.000 | 19 | 0.000 | 10 | Additional genes in candidate EG10644 (narV, b1465) -> nitrate reductase Z, γ subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit | |
| Candidate 0115 | 0.999 | 9 | 0.200 | 10 | Additional genes in candidate EG10646 (narX, b1222) -> NarX-Phis EG10647 (narY, b1467) -> nitrate reductase Z, β subunit | |
| Candidate 0117 | 0.999 | 8 | 0.400 | 10 | Additional genes in candidate EG10643 (narL, b1221) -> NarL-Phosphorylated transcriptional dual regulator EG10646 (narX, b1222) -> NarX-Phis |
| Group 043 | Candidate 0109 | 0.999 | 9 | 0.000 | 10 | Genes in candidate G6168 (insE-1, b0298) -> IS3 element protein InsE G6169 (insF-1, b0299) -> IS3 element protein InsF G6223 (insF-2, b0372) -> IS3 element protein InsF G6224 (insE-2, b0373) -> IS3 element protein InsE G6296 (insE-3, b0540) -> IS3 element protein InsE G6297 (insF-3, b0541) -> IS3 element protein InsF G6533 (insF-4, b1026) -> IS3 element protein InsF G6534 (insE-4, b1027) -> IS3 element protein InsE G7125 (insE-5, b2088) -> IS3 element protein InsE G7126 (insF-5, b2089) -> IS3 element protein InsF |
| Group 044 | Genes common to all candidates in group EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching EG10602 (motB, b1889) -> MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0185 | 0.999 | 14 | 1.000 | 9 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0103 | 0.999 | 34 | 1.000 | 11 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ | |
| Candidate 0186 | 0.999 | 33 | 1.000 | 9 | Additional genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0085 | 0.999 | 85 | 0.727 | 11 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G361 (flgE, b1076) -> flagellar hook protein FlgE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein | |
| Candidate 0151 | 0.999 | 53 | 1.000 | 10 | Additional genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
| Group 045 | Candidate 0147 | 0.999 | 5 | 1.000 | 10 | Genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit EG10335 (frr, b0172) -> ribosome recycling factor EG10570 (map, b0168) -> methionine aminopeptidase EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme EG11539 (pyrH, b0171) -> PyrH EG12336 (yaeH, b0163) -> conserved protein EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase |
| Group 046 | Genes common to all candidates in group EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7638 (yraI, b3143) -> predicted pilin chaperone | |||||
| Candidate 0126 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0125 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0127 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG11989 (yehC, b2110) -> putative fimbrial chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0133 | 0.999 | 2 | 0.000 | 10 | Additional genes in candidate EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae EG11989 (yehC, b2110) -> putative fimbrial chaperone G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone | |
| Candidate 0178 | 0.999 | 1 | 0.111 | 9 | Additional genes in candidate G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein G7586 (yqiH, b3047) -> putative membrane protein |
| Group 047 | Genes common to all candidates in group EG10146 (cheA, b1888) -> CheA(S) EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10150 (cheY, b1882) -> CheY-acetylated EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0188 | 0.999 | 37 | 1.000 | 9 | Additional genes in candidate EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0187 | 0.999 | 38 | 1.000 | 9 | Additional genes in candidate G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC | |
| Candidate 0104 | 0.999 | 39 | 1.000 | 11 | Additional genes in candidate EG10147 (cheB, b1883) -> CheB-Pasp EG10149 (cheW, b1887) -> CheW EG10151 (cheZ, b1881) -> CheZ EG10601 (motA, b1890) -> MotA protein, proton conductor component of motor; no effect on switching |
| Group 048 | Genes common to all candidates in group G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain G6362 (ybeY, b0659) -> conserved protein involved in translation G6361 (ybeX, b0658) -> predicted ion transport protein EG10532 (leuS, b0642) -> leucyl-tRNA synthetase EG10168 (lnt, b0657) -> apolipoprotein N-acyltransferase | |||||
| Candidate 0149 | 0.999 | 1 | 1.000 | 10 | Additional genes in candidate EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG12851 (ybeL, b0643) -> conserved protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB | |
| Candidate 0102 | 0.999 | 2 | 1.000 | 11 | Additional genes in candidate EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG12851 (ybeL, b0643) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0184 | 0.999 | 1 | 1.000 | 9 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11255 (ybeB, b0637) -> predicted protein EG12851 (ybeL, b0643) -> conserved protein G6365 (ubiF, b0662) -> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase | |
| Candidate 0183 | 0.999 | 0 | 1.000 | 9 | Additional genes in candidate EG10855 (lptE, b0641) -> rare lipoprotein LptE EG12851 (ybeL, b0643) -> conserved protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB G6365 (ubiF, b0662) -> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase | |
| Candidate 0182 | 0.999 | 9 | 0.889 | 9 | Additional genes in candidate EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11734 (phoH, b1020) -> ATP-binding protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0246 | 1.000 | 5 | 0.875 | 8 | Additional genes in candidate EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11734 (phoH, b1020) -> ATP-binding protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 049 | Genes common to all candidates in group EG10258 (eno, b2779) -> Eno EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer G7424 (ftsB, b2748) -> essential cell division protein FtsB | |||||
| Candidate 0143 | 0.999 | 4 | 0.800 | 10 | Additional genes in candidate EG10510 (rpoS, b2741) -> RNA polymerase, sigma S (sigma 38) factor EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator | |
| Candidate 0142 | 0.999 | 5 | 0.800 | 10 | Additional genes in candidate EG10810 (pyrG, b2780) -> PyrG EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator | |
| Candidate 0243 | 0.999 | 2 | 1.000 | 8 | Additional genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10810 (pyrG, b2780) -> PyrG |
| Group 050 | Genes common to all candidates in group EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10370 (ispG, b2515) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase EG10650 (ndk, b2518) -> Ndk EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase G7321 (yfgM, b2513) -> conserved protein G7325 (iscS, b2530) -> cysteine desulfurase monomer G7326 (iscR, b2531) -> IscR transcriptional dual regulator | |||||
| Candidate 0195 | 0.999 | 3 | 1.000 | 9 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0194 | 0.999 | 5 | 1.000 | 9 | Additional genes in candidate EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0157 | 0.999 | 6 | 1.000 | 10 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase G7319 (der, b2511) -> 50S ribosomal subunit stability factor G7320 (bamB, bamB) -> BamB |
| Group 051 | Genes common to all candidates in group EG10353 (fucR, b2805) -> FucR transcriptional activator EG10974 (srlR, b2707) -> GutR transcriptional repressor EG12162 (gatR_2, b2090) -> GatR_2 G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7630 (agaR, b3131) -> AgaR transcriptional repressor G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism | |||||
| Candidate 0175 | 0.999 | 12 | 0.000 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator | |
| Candidate 0174 | 0.999 | 10 | 0.111 | 9 | Additional genes in candidate G6638 (yciT, b1284) -> DNA-binding transcriptional regulator G7854 (ulaR, b4191) -> UlaR transcriptional repressor | |
| Candidate 0124 | 0.999 | 19 | 0.000 | 10 | Additional genes in candidate EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator |
| Group 052 | Candidate 0193 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 053 | Candidate 0189 | 1.000 | 13 | 1.000 | 9 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10382 (glmS, b3729) -> GlmS EG11198 (glmU, b3730) -> GlmU G7723 (frlB, b3371) -> fructoselysine 6-phosphate deglycase monomer |
| Group 054 | Candidate 0190 | 0.999 | 10 | 1.000 | 9 | Genes in candidate EG10073 (aroA, b0908) -> 3-phosphoshikimate-1-carboxyvinyltransferase EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10441 (ihfB, b0912) -> integration host factor (IHF), β subunit EG10707 (pheA, b2599) -> PheA EG10900 (rpsA, b0911) -> 30S ribosomal subunit protein S1 EG10946 (serC, b0907) -> SerC EG11143 (ubiG, b2232) -> UbiG EG11265 (cmk, b0910) -> cytidylate kinase EG12691 (yciM, b1280) -> conserved protein |
| Group 055 | Candidate 0166 | 0.999 | 14 | 0.111 | 9 | Genes in candidate EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF EG12079 (nikE, b3480) -> NikE EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6778 (ddpD, b1484) -> YddP |
| Group 056 | Genes common to all candidates in group G6781 (ddpA, b1487) -> YddS G6432 (gsiD, b0832) -> GsiD G6430 (gsiB, b0830) -> GsiB EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB EG12076 (nikB, b3477) -> NikB EG12075 (nikA, b3476) -> NikA EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0181 | 0.999 | 17 | 0.111 | 9 | Additional genes in candidate EG12077 (nikC, b3478) -> NikC | |
| Candidate 0180 | 0.999 | 18 | 0.111 | 9 | Additional genes in candidate G2002 (sapA, b1294) -> SapA |
| Group 057 | Genes common to all candidates in group EG10532 (leuS, b0642) -> leucyl-tRNA synthetase EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11255 (ybeB, b0637) -> predicted protein EG12851 (ybeL, b0643) -> conserved protein | |||||
| Candidate 0167 | 0.999 | 0 | 1.000 | 9 | Additional genes in candidate EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG11592 (ybeD, b0631) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0150 | 0.999 | 0 | 1.000 | 10 | Additional genes in candidate EG10168 (lnt, b0657) -> apolipoprotein N-acyltransferase EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG11412 (holA, b0640) -> DNA polymerase III, δ subunit G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase G6361 (ybeX, b0658) -> predicted ion transport protein | |
| Candidate 0247 | 0.999 | 0 | 1.000 | 8 | Additional genes in candidate EG10168 (lnt, b0657) -> apolipoprotein N-acyltransferase G6361 (ybeX, b0658) -> predicted ion transport protein G6365 (ubiF, b0662) -> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase |
| Group 058 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0120 | 0.999 | 45 | 0.700 | 10 | Additional genes in candidate EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) | |
| Candidate 0217 | 0.999 | 57 | 0.750 | 8 | Additional genes in candidate EG10496 (ilvD, b3771) -> IlvD EG11577 (leuB, b0073) -> LeuB | |
| Candidate 0172 | 1.000 | 74 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10496 (ilvD, b3771) -> IlvD G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0170 | 1.000 | 58 | 0.667 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0218 | 1.000 | 45 | 0.750 | 8 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) |
| Group 059 | Genes common to all candidates in group G6141 (yagF, b0269) -> CP4-6 prophage; predicted dehydratase EG11583 (gcl, b0507) -> Gcl EG10500 (ilvI, b0077) -> IlvI EG10499 (ilvH, brnP) -> IlvH EG10496 (ilvD, b3771) -> IlvD EG10494 (ilvB, b3671) -> IlvB | |||||
| Candidate 0168 | 0.999 | 69 | 0.556 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0171 | 0.999 | 70 | 0.778 | 9 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0169 | 0.999 | 77 | 0.667 | 9 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11577 (leuB, b0073) -> LeuB G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase | |
| Candidate 0244 | 0.999 | 66 | 0.625 | 8 | Additional genes in candidate EG10257 (edd, b1851) -> phosphogluconate dehydratase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase |
| Group 060 | Genes common to all candidates in group EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G6922 (ydiS, b1699) -> putative flavoprotein G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain | |||||
| Candidate 0163 | 0.999 | 26 | 0.000 | 9 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin | |
| Candidate 0162 | 0.999 | 27 | 0.111 | 9 | Additional genes in candidate EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6923 (ydiT, b1700) -> putative ferredoxin G7433 (ygcO, b2767) -> predicted 4Fe-4S cluster-containing protein | |
| Candidate 0203 | 1.000 | 25 | 0.000 | 8 | Additional genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G7435 (ygcQ, b2769) -> predicted flavoprotein |
| Group 061 | Genes common to all candidates in group EG11798 (hofC, b0106) -> protein transport protein HofC EG12106 (hofB, b0107) -> protein involved in plasmid replication EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |||||
| Candidate 0191 | 0.999 | 0 | 0.778 | 9 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG11359 (gspO, b3335) -> leader peptidase, integral membrane protein EG12107 (ppdD, b0108) -> prepilin peptidase dependent protein G7539 (pppA, b2972) -> prepilin peptidase | |
| Candidate 0214 | 0.999 | 0 | 0.750 | 8 | Additional genes in candidate EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG11359 (gspO, b3335) -> leader peptidase, integral membrane protein G7539 (pppA, b2972) -> prepilin peptidase | |
| Candidate 0192 | 0.999 | 0 | 1.000 | 9 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase EG10042 (ampE, b0111) -> predicted inner membrane protein EG11546 (nadC, b0109) -> quinolinate phosphoribosyltransferase (decarboxylating) monomer EG12107 (ppdD, b0108) -> prepilin peptidase dependent protein |
| Group 062 | Genes common to all candidates in group EG10004 (dfp, b3639) -> Dfp EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |||||
| Candidate 0197 | 0.999 | 20 | 0.667 | 9 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase | |
| Candidate 0196 | 0.999 | 17 | 0.667 | 9 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A G7914 (sgcE, b4301) -> predicted epimerase | |
| Candidate 0254 | 0.999 | 11 | 0.750 | 8 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11440 (def, b3287) -> peptide deformylase |
| Group 063 | Genes common to all candidates in group G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase EG12715 (dxr, b0173) -> Dxr EG12436 (rseP, b0176) -> RseP zinc protease EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG10335 (frr, b0172) -> ribosome recycling factor EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase | |||||
| Candidate 0340 | 1.000 | 7 | 0.857 | 7 | Additional genes in candidate EG11178 (rbfA, b3167) -> 30S ribosome binding factor | |
| Candidate 0153 | 1.000 | 49 | 0.900 | 10 | Additional genes in candidate EG10770 (proS, b0194) -> prolyl-tRNA synthetase EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11539 (pyrH, b0171) -> PyrH G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase |
| Group 064 | Genes common to all candidates in group G7699 (yrdD, b3283) -> predicted DNA topoisomerase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase EG11605 (smg, b3284) -> conserved protein EG11604 (smf, b3286 (obsolete)) -> conserved protein EG11440 (def, b3287) -> peptide deformylase EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase | |||||
| Candidate 0275 | 1.000 | 1 | 0.857 | 7 | Additional genes in candidate G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase | |
| Candidate 0154 | 0.999 | 0 | 1.000 | 10 | Additional genes in candidate EG10077 (aroE, b3281) -> shikimate dehydrogenase EG11019 (trkA, b3290) -> NAD-binding component of TrK potassium transporter G7697 (yrdB, b3280) -> conserved protein G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 065 | Genes common to all candidates in group G7659 (mlaC, b3192) -> MlaC G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator EG12801 (mlaF, b3195) -> MlaF EG12800 (mlaE, b3194) -> MlaE EG12799 (mlaD, b3193) -> MlaD EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase | |||||
| Candidate 0270 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate G7658 (mlaB, b3191) -> MlaB | |
| Candidate 0111 | 0.999 | 15 | 0.900 | 10 | Additional genes in candidate EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG11652 (degS, b3235) -> DegS serine endoprotease G7682 (degQ, b3234) -> serine endoprotease, periplasmic |
| Group 066 | Genes common to all candidates in group G6719 (paaK, b1398) -> phenylacetate-CoA ligase G6717 (paaI, b1396) -> hydroxyphenylacetyl-CoA thioesterase G6713 (paaE, b1392) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6712 (paaD, b1391) -> phenylacetate degradation protein G6711 (paaC, b1390) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6710 (paaB, b1389) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit G6709 (paaA, b1388) -> predicted ring 1,2-phenylacetyl-CoA epoxidase subunit | |||||
| Candidate 0160 | 0.999 | 3 | 1.000 | 9 | Additional genes in candidate G6715 (paaG, b1394) -> predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) G6720 (paaX, b1399) -> PaaX | |
| Candidate 0198 | 0.999 | 5 | 1.000 | 8 | Additional genes in candidate G6708 (paaZ, b1387) -> oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
| Group 067 | Genes common to all candidates in group EG11201 (yigA, b3810) -> conserved protein EG10434 (hemY, b3802) -> predicted protoheme IX synthesis protein EG10433 (hemX, b3803) -> conserved protein EG10430 (hemD, b3804) -> uroporphyrinogen III synthase EG10209 (dapF, b3809) -> diaminopimelate epimerase EG10170 (cyaA, b3806) -> adenylate cyclase | |||||
| Candidate 0330 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10845 (rho, b3783) -> transcription termination factor Rho monomer; polarity suppressor | |
| Candidate 0148 | 0.999 | 0 | 1.000 | 10 | Additional genes in candidate EG10429 (hemC, b3805) -> hydroxymethylbilane synthase EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG11202 (yigB, b3812) -> FMN phosphatase EG11653 (cyaY, b3807) -> frataxin, iron-binding and oxidizing protein |
| Group 068 | Genes common to all candidates in group EG12152 (idnK, b4268) -> D-gluconate kinase, thermosensitive EG12539 (idnT, b4265) -> L-idonate / 5-ketogluconate / gluconate transporter EG12548 (yjhF, b4296) -> YjhF Gnt tranporter EG12629 (gntK, b3437) -> GntK EG12631 (gntU, b3435 (obsolete)) -> GntU gluconate Gnt transporter | |||||
| Candidate 0161 | 1.000 | 8 | 0.111 | 9 | Additional genes in candidate EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter EG12630 (gntR, b3438) -> GntR transcriptional repressor G7421 (ygbN, b2740) -> YgbN Gnt transporter | |
| Candidate 0179 | 1.000 | 15 | 0.000 | 9 | Additional genes in candidate EG10250 (dsdX, b2365) -> DsdX Gnt tranporter EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter G7421 (ygbN, b2740) -> YgbN Gnt transporter | |
| Candidate 0264 | 0.999 | 0 | 0.000 | 7 | Additional genes in candidate EG12630 (gntR, b3438) -> GntR transcriptional repressor G7891 (idnR, b4264) -> IdnR transcriptional regulator |
| Group 069 | Genes common to all candidates in group EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein | |||||
| Candidate 0307 | 1.000 | 12 | 1.000 | 7 | Additional genes in candidate G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0216 | 1.000 | 6 | 1.000 | 8 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG12371 (nlpI, b3163) -> lipoprotein involved in cell division | |
| Candidate 0119 | 0.999 | 47 | 1.000 | 10 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG12095 (secG, b3175) -> SecG EG12794 (yhbY, b3180) -> predicted RNA-binding protein |
| Group 070 | Genes common to all candidates in group EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG11652 (degS, b3235) -> DegS serine endoprotease G7682 (degQ, b3234) -> serine endoprotease, periplasmic | |||||
| Candidate 0211 | 0.999 | 1 | 0.875 | 8 | Additional genes in candidate G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain | |
| Candidate 0210 | 0.999 | 0 | 0.875 | 8 | Additional genes in candidate G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain G7681 (yhcB, b3233) -> conserved protein | |
| Candidate 0165 | 0.999 | 8 | 0.889 | 9 | Additional genes in candidate EG12799 (mlaD, b3193) -> MlaD G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC |
| Group 071 | Genes common to all candidates in group EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae G6387 (ybgQ, b0718) -> predicted outer membrane usher protein G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein | |||||
| Candidate 0229 | 0.999 | 2 | 0.125 | 8 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6482 (ycbS, b0940) -> predicted outer membrane usher protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0227 | 0.999 | 2 | 0.000 | 8 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6482 (ycbS, b0940) -> predicted outer membrane usher protein G6795 (ydeT, b1505) -> predicted protein | |
| Candidate 0228 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone | |
| Candidate 0226 | 0.999 | 0 | 0.000 | 8 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6386 (ybgP, b0717) -> putative fimbrial chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein | |
| Candidate 0177 | 0.999 | 2 | 0.000 | 9 | Additional genes in candidate EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein |
| Group 072 | Candidate 0255 | 1.000 | 12 | 0.500 | 8 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10251 (dut, b3640) -> Dut EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG11312 (yicR, b3638) -> hypothetical protein G6122 (ykfG, b0247) -> CP4-6 prophage; predicted DNA repair protein G7082 (yeeS, b2002) -> CP4-44 prophage; predicted DNA repair protein G7379 (yfjY, b2644) -> CP4-57 prophage; predicted DNA repair protein |
| Group 073 | Candidate 0202 | 1.000 | 15 | 0.000 | 8 | Genes in candidate EG11677 (modF, b0760) -> ModF EG11767 (yhhJ, b3485) -> predicted transporter subunit: membrane component of ABC superfamily EG12223 (rbbA, b3486) -> ribosome-associated ATPase EG12224 (yhiI, b3487) -> predicted HlyD family secretion protein G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 074 | Candidate 0250 | 1.000 | 24 | 1.000 | 8 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 075 | Candidate 0204 | 1.000 | 19 | 0.625 | 8 | Genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly G7454 (csdA, b2810) -> cysteine sulfinate desulfinase |
| Group 076 | Candidate 0213 | 1.000 | 7 | 0.500 | 8 | Genes in candidate EG10674 (oppA, b1243) -> OppA-oligopeptide ABC transporter substrate-binding EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF G6665 (mppA, b1329) -> periplasmic murein tripeptide binding protein G6778 (ddpD, b1484) -> YddP G7570 (ygiS, b3020) -> predicted transporter subunit |
| Group 077 | Candidate 0220 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 078 | Candidate 0212 | 1.000 | 25 | 0.250 | 8 | Genes in candidate EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component G7990 (fruB, b2169) -> FruB |
| Group 079 | Candidate 0249 | 1.000 | 9 | 1.000 | 8 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10415 (greA, b3181) -> transcription elongation factor GreA EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12794 (yhbY, b3180) -> predicted RNA-binding protein EG50011 (folP, b3177) -> FolP |
| Group 080 | Genes common to all candidates in group G6359 (gltI, b0655) -> GltI EG12837 (yhdZ, b3271) -> YhdZ EG12836 (yhdY, b3270) -> YhdY EG12835 (yhdX, b3269) -> YhdX EG12663 (gltL, b0652) -> GltL EG12662 (gltK, b0653) -> GltK EG12661 (gltJ, b0654) -> GltJ | |||||
| Candidate 0223 | 0.999 | 5 | 0.375 | 8 | Additional genes in candidate EG10389 (glnQ, b0809) -> GlnQ | |
| Candidate 0201 | 1.000 | 8 | 0.250 | 8 | Additional genes in candidate EG12834 (yhdW, b3268) -> YhdW |
| Group 081 | Genes common to all candidates in group G7710 (gspK, b3332) -> putative protein secretion protein for export G7709 (gspJ, b3331) -> putative protein secretion protein for export G7708 (gspI, b3330) -> putative protein secretion protein for export G7706 (gspG, b3328) -> putative protein secretion protein for export G7705 (gspF, b3327) -> putative protein secretion protein for export G7535 (yghD, b2968) -> predicted secretion pathway protein, M-type protein, membrane anchored | |||||
| Candidate 0159 | 0.999 | 1 | 1.000 | 9 | Additional genes in candidate G7537 (yghF, b2970) -> predicted secretion pathway protein, C-type protein G7703 (gspD, b3325) -> putative protein secretion protein for export G7704 (gspE, b3326) -> putative protein secretion protein for export | |
| Candidate 0256 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate G7711 (gspL, b3333) -> putative protein secretion protein for export |
| Group 082 | Genes common to all candidates in group G7893 (idnD, b4267) -> L-idonate 5-dehydrogenase G7339 (yphC, b2545) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6963 (ydjL, b1776) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6961 (ydjJ, b1774) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6838 (rspB, b1580) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding EG10993 (tdh, b3616) -> Tdh | |||||
| Candidate 0164 | 0.999 | 18 | 0.111 | 9 | Additional genes in candidate EG12417 (gatD, b2091) -> galactitol-1-phosphate dehydrogenase G6651 (ycjQ, b1313) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7945 (yjjN, b4358) -> predicted L-galactonate oxidoreductase | |
| Candidate 0305 | 0.999 | 6 | 0.143 | 7 | Additional genes in candidate EG10512 (kbl, b3617) -> Kbl |
| Group 083 | Genes common to all candidates in group G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG10015 (rodZ, b2516) -> rod shape-determining membrane protein | |||||
| Candidate 0252 | 0.999 | 2 | 1.000 | 8 | Additional genes in candidate EG10983 (suhB, b2533) -> inositol monophosphatase | |
| Candidate 0251 | 0.999 | 0 | 1.000 | 8 | Additional genes in candidate G7321 (yfgM, b2513) -> conserved protein |
| Group 084 | Candidate 0221 | 0.999 | 0 | 1.000 | 8 | Genes in candidate EG10427 (hemA, b1210) -> HemA EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG11251 (ychA, b1214) -> predicted transcriptional regulator EG11293 (lolB, b1209) -> outer membrane lipoprotein, localization of lipoproteins in the outer membrane EG11294 (ispE, b1208) -> IspE EG12424 (prmC, b1212) -> protein-(glutamine-N5) methyltransferase G6630 (ychQ, b1213) -> predicted transcriptional regulator |
| Group 085 | Genes common to all candidates in group EG10298 (fepG, b0589) -> FepG EG10296 (fepD, b0590) -> FepD EG10295 (fepC, b0588) -> FepC EG10290 (fecE, b4287) -> FecE EG10289 (fecD, b4288) -> FecD EG10288 (fecC, b4289) -> FecC | |||||
| Candidate 0238 | 0.999 | 9 | 0.375 | 8 | Additional genes in candidate EG10287 (fecB, b4290) -> FecB EG10294 (fepB, b0592) -> FepB | |
| Candidate 0237 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10287 (fecB, b4290) -> FecB EG10303 (fhuB, b0153) -> FhuB | |
| Candidate 0236 | 0.999 | 13 | 0.500 | 8 | Additional genes in candidate EG10294 (fepB, b0592) -> FepB EG10304 (fhuC, b0151) -> FhuC | |
| Candidate 0235 | 0.999 | 15 | 0.375 | 8 | Additional genes in candidate EG10303 (fhuB, b0153) -> FhuB EG10304 (fhuC, b0151) -> FhuC |
| Group 086 | Genes common to all candidates in group G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer G7409 (ygaD, b2700) -> conserved protein EG12022 (dusC, b2140) -> tRNA dihydrouridine synthase EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer EG11645 (ydeJ, b1537) -> conserved protein EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase EG10387 (glnL, b3869) -> NtrB | |||||
| Candidate 0225 | 0.999 | 4 | 0.625 | 8 | Additional genes in candidate EG10317 (fis, b3261) -> Fis | |
| Candidate 0224 | 0.999 | 5 | 0.625 | 8 | Additional genes in candidate G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair |
| Group 087 | Candidate 0215 | 0.999 | 0 | 1.000 | 8 | Genes in candidate EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10855 (lptE, b0641) -> rare lipoprotein LptE EG11255 (ybeB, b0637) -> predicted protein EG11412 (holA, b0640) -> DNA polymerase III, δ subunit EG12851 (ybeL, b0643) -> conserved protein G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase G6362 (ybeY, b0659) -> conserved protein involved in translation |
| Group 088 | Candidate 0209 | 0.999 | 0 | 1.000 | 8 | Genes in candidate EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG11652 (degS, b3235) -> DegS serine endoprotease EG12799 (mlaD, b3193) -> MlaD G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7659 (mlaC, b3192) -> MlaC G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7665 (lptA, b3200) -> LptA |
| Group 089 | Candidate 0219 | 0.999 | 6 | 0.000 | 8 | Genes in candidate EG10491 (iclR, b4018) -> IclR transcriptional repressor EG12278 (yiaJ, b3574) -> YiaJ transcriptional repressor G6144 (yagI, b0272) -> CP4-6 prophage; predicted DNA-binding transcriptional regulator G6201 (mhpR, b0346) -> MhpR transcriptional activator G6276 (allR, b0506) -> AllR transcriptional repressor G7003 (kdgR, b1827) -> KdgR transcriptional repressor G7161 (yfaX, b2248) -> predicted DNA-binding transcriptional regulator G7912 (yjhI, b4299) -> KpLE2 phage-like element; predicted DNA-binding transcriptional regulator |
| Group 090 | Candidate 0242 | 0.999 | 0 | 1.000 | 8 | Genes in candidate EG10270 (era, b2566) -> GTP-binding protein EG10530 (lepB, b2568) -> leader peptidase (signal peptidase I) EG10631 (nadB, b2574) -> L-aspartate oxidase EG11897 (rpoE, b2573) -> RNA polymerase, sigma 24 (sigma E) factor EG12341 (rseA, b2572) -> anti-sigma factor G7348 (rseB, b2571) -> rseB G7510 (ygfY, b2897) -> conserved protein G7511 (ygfZ, b2898) -> folate-binding protein |
| Group 091 | Candidate 0245 | 0.999 | 1 | 1.000 | 8 | Genes in candidate EG10230 (dksA, b0145) -> RNA polymerase-binding transcription factor EG10605 (mrcB, b0149) -> MrcB EG10690 (pcnB, b0143) -> poly(A) polymerase I EG10949 (sfsA, b0146) -> predicted DNA-binding transcriptional regulator of maltose metabolism EG11362 (yadB, b0144) -> glutamyl-Q tRNA(Asp) synthetase EG11374 (folK, b0142) -> 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase EG11675 (panB, b0134) -> 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer EG11746 (panC, b0133) -> pantothenate synthetase monomer |
| Group 092 | Genes common to all candidates in group G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein EG10313 (fimF, b4318) -> fimbrial morphology EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) | |||||
| Candidate 0231 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6292 (sfmD, b0532) -> predicted outer membrane export usher protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0230 | 0.999 | 1 | 0.000 | 8 | Additional genes in candidate EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0233 | 0.999 | 0 | 0.000 | 8 | Additional genes in candidate EG11974 (fimI, b4315) -> fimbrial protein EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone | |
| Candidate 0234 | 0.999 | 1 | 0.125 | 8 | Additional genes in candidate EG11974 (fimI, b4315) -> fimbrial protein EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6290 (sfmA, b0530) -> predicted fimbrial-like adhesin protein G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein | |
| Candidate 0232 | 0.999 | 2 | 0.000 | 8 | Additional genes in candidate EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6290 (sfmA, b0530) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein | |
| Candidate 0319 | 0.999 | 0 | 0.143 | 7 | Additional genes in candidate G6290 (sfmA, b0530) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6482 (ycbS, b0940) -> predicted outer membrane usher protein |
| Group 093 | Genes common to all candidates in group EG11404 (ychF, b1203) -> putative GTP-binding protein EG11294 (ispE, b1208) -> IspE EG11293 (lolB, b1209) -> outer membrane lipoprotein, localization of lipoproteins in the outer membrane EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG10427 (hemA, b1210) -> HemA | |||||
| Candidate 0222 | 1.000 | 8 | 1.000 | 8 | Additional genes in candidate EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG12424 (prmC, b1212) -> protein-(glutamine-N5) methyltransferase | |
| Candidate 0316 | 1.000 | 1 | 1.000 | 7 | Additional genes in candidate EG10885 (rplY, b2185) -> 50S ribosomal subunit protein L25 |
| Group 094 | Genes common to all candidates in group EG11011 (tolR, b0738) -> TolR EG11010 (tolQ, b0737) -> TolQ EG11008 (tolB, b0740) -> TolB EG10684 (pal, b0741) -> Pal | |||||
| Candidate 0241 | 1.000 | 19 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10272 (exbD, b3005) -> ExbD uptake of enterochelin; tonB-dependent uptake of B colicins EG11110 (ybgC, b0736) -> esterase/thioesterase EG12854 (ybgF, b0742) -> predicted periplasmic protein | |
| Candidate 0240 | 1.000 | 5 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG11007 (tolA, b0739) -> TolA EG11110 (ybgC, b0736) -> esterase/thioesterase EG12854 (ybgF, b0742) -> predicted periplasmic protein | |
| Candidate 0295 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG11007 (tolA, b0739) -> TolA EG11110 (ybgC, b0736) -> esterase/thioesterase EG12395 (ybgE, b0735) -> putative lipoprotein | |
| Candidate 0298 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10630 (nadA, b0750) -> NadA EG11007 (tolA, b0739) -> TolA EG12854 (ybgF, b0742) -> predicted periplasmic protein |
| Group 095 | Genes common to all candidates in group G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G6157 (yagT, b0286) -> aldehyde ferredoxin oxidoreductase, Fe-S subunit G6156 (yagS, b0285) -> aldehyde ferredoxin oxidoreductase, FAD-binding subunit G6155 (yagR, b0284) -> aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit | |||||
| Candidate 0261 | 0.999 | 9 | 0.286 | 7 | Additional genes in candidate G6154 (yagQ, b0283) -> conserved protein | |
| Candidate 0200 | 0.999 | 19 | 0.375 | 8 | Additional genes in candidate G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage |
| Group 096 | Genes common to all candidates in group G7546 (glcC, b2980) -> GlcC transcriptional dual regulator G6178 (ykgG, b0308) -> predicted transporter G6177 (ykgF, b0307) -> predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain G6176 (ykgE, b0306) -> predicted oxidoreductase EG11962 (lldR, b3604) -> LldR transcriptional repressor EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator | |||||
| Candidate 0277 | 0.999 | 0 | 0.429 | 7 | Additional genes in candidate EG20249 (uxuR, b4324) -> UxuR transcriptional repressor | |
| Candidate 0206 | 0.999 | 4 | 0.375 | 8 | Additional genes in candidate EG11961 (lldP, b3603) -> LldP lactate transporter G7542 (glcA, b2975) -> GlcA glycolate transporter |
| Group 097 | Genes common to all candidates in group G6825 (cspI, b1552) -> Qin prophage; cold shock protein G6511 (cspG, b0990) -> cold shock protein CspG EG12205 (cspF, b1558) -> Qin prophage; cold shock protein EG12204 (cspC, b1823) -> stress protein, member of the CspA family; predicted DNA-binding transcriptional regulator EG12179 (cspE, b0623) -> transcription antiterminator and regulator of RNA stability EG10166 (cspA, b3556) -> CspA transcriptional activator | |||||
| Candidate 0333 | 0.999 | 5 | 0.000 | 7 | Additional genes in candidate EG11111 (cspD, b0880) -> DNA replication inhibitor | |
| Candidate 0248 | 0.999 | 6 | 0.000 | 8 | Additional genes in candidate EG12203 (cspB, b1557) -> Qin prophage; cold shock protein; predicted DNA-binding transcriptional regulator G6510 (cspH, b0989) -> stress protein, member of the CspA family |
| Group 098 | Genes common to all candidates in group G7895 (insD-6, b4273) -> IS2 element protein G7584 (insD-5, b3045) -> IS2 element protein G7480 (insD-4, b2860) -> IS2 element protein G7076 (insD-3, b1996) -> IS2 element protein G6723 (insD-2, b1402) -> IS2 element protein G6213 (insD-1, b0361) -> IS2 element protein | |||||
| Candidate 0199 | 0.999 | 3 | 0.000 | 8 | Additional genes in candidate G7481 (insC-4, b2861) -> IS2 element protein InsA G7583 (insC-5, b3044) -> IS2 element protein InsA | |
| Candidate 0260 | 0.999 | 2 | 0.000 | 7 | Additional genes in candidate G6836 (insD, b1578) -> Qin prophage; predicted transposase |
| Group 099 | Genes common to all candidates in group G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase | |||||
| Candidate 0274 | 0.999 | 3 | 0.571 | 7 | Additional genes in candidate EG12361 (kduD, b2842) -> 2-deoxy-D-gluconate 3-dehydrogenase G7892 (idnO, b4266) -> 5-keto-D-gluconate 5-reductase | |
| Candidate 0207 | 0.999 | 7 | 0.750 | 8 | Additional genes in candidate EG10971 (srlD, b2705) -> SrlD EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein EG12361 (kduD, b2842) -> 2-deoxy-D-gluconate 3-dehydrogenase | |
| Candidate 0279 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG10971 (srlD, b2705) -> SrlD G7514 (ygfF, b2902) -> predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0273 | 0.999 | 7 | 1.000 | 7 | Additional genes in candidate EG12606 (fabF, b1095) -> FabF G7514 (ygfF, b2902) -> predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain |
| Group 100 | Genes common to all candidates in group EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG12606 (fabF, b1095) -> FabF EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP | |||||
| Candidate 0323 | 1.000 | 15 | 1.000 | 7 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG10857 (rnc, b2567) -> RNase III EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein | |
| Candidate 0286 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG10857 (rnc, b2567) -> RNase III EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0239 | 1.000 | 13 | 1.000 | 8 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0205 | 0.999 | 12 | 1.000 | 8 | Additional genes in candidate EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase | |
| Candidate 0272 | 0.999 | 4 | 0.857 | 7 | Additional genes in candidate EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase G7880 (yjgI, b4249) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0321 | 0.999 | 4 | 0.857 | 7 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase G7880 (yjgI, b4249) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain | |
| Candidate 0458 | 1.000 | 7 | 0.833 | 6 | Additional genes in candidate EG10274 (fabB, b2323) -> FabB EG10277 (fabH, b1091) -> FabH |
| Group 101 | Genes common to all candidates in group EG10784 (pstC, b3727) -> PstC EG10783 (pstB, b3725) -> PstB EG10782 (pstA, b3726) -> PstA EG10735 (phoU, b3724) -> PhoU phosphate transport system protein EG10733 (phoR, b0400) -> PhoR sensory histidine kinase - phosphorylated EG10728 (phoB, b0399) -> PhoB-Phosphorylated transcriptional dual regulator | |||||
| Candidate 0292 | 1.000 | 4 | 1.000 | 7 | Additional genes in candidate EG10734 (pstS, b3728) -> PstS | |
| Candidate 0291 | 1.000 | 4 | 1.000 | 7 | Additional genes in candidate EG11218 (creB, b4398) -> CreB-Phosphorylated transcriptional regulator |
| Group 102 | Candidate 0289 | 1.000 | 3 | 0.429 | 7 | Genes in candidate EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG11629 (potF, b0854) -> PotF EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI G6644 (puuA, b1297) -> glutamate-putrescine ligase |
| Group 103 | Candidate 0297 | 1.000 | 13 | 0.714 | 7 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites G6871 (rsxA, b1627) -> integral membrane protein of SoxR-reducing complex G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6873 (rsxC, b1629) -> member of SoxR-reducing complex G6874 (rsxD, b1630) -> integral membrane protein of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex G6876 (rsxE, b1632) -> integral membrane protein of SoxR-reducing complex |
| Group 104 | Candidate 0314 | 1.000 | 5 | 1.000 | 7 | Genes in candidate EG10440 (ihfA, b1712) -> integration host factor (IHF), α subunit EG10506 (infC, b1718) -> protein chain initiation factor IF-3 EG10709 (pheS, b1714) -> phenylalanyl-tRNA synthetase α-chain EG10710 (pheT, b1713) -> phenylalanyl-tRNA synthetase β-chain EG10881 (rplT, b1716) -> 50S ribosomal subunit protein L20 EG11001 (thrS, b1719) -> threonyl-tRNA synthetase EG11231 (rpmI, b1717) -> 50S ribosomal subunit protein L35 |
| Group 105 | Candidate 0335 | 1.000 | 10 | 0.714 | 7 | Genes in candidate EG10158 (clpP, b0437) -> ClpP EG10159 (clpX, b0438) -> ClpX EG10466 (hupA, b4000) -> transcriptional dual regulator HU-α (HU-2) EG10467 (hupB, b0440) -> transcriptional dual regulator HU-β, NS1 (HU-1) EG10542 (lon, b0439) -> Lon EG11003 (tig, b0436) -> trigger factor; a molecular chaperone involved in cell division G6242 (ppiD, b0441) -> periplasmic folding helper protein |
| Group 106 | Genes common to all candidates in group EG11569 (lptD, b0054) -> LptD EG10985 (surA, b0053) -> peptidyl-prolyl cis-trans isomerase (PPIase) EG10691 (pdxA, b0052) -> PdxA EG10523 (rsmA, b0051) -> 16S rRNA m62A1518,m62A1519 dimethyltransferase EG10048 (apaH, b0049) -> diadenosine tetraphosphatase EG10047 (apaG, b0050) -> hypothetical protein | |||||
| Candidate 0349 | 1.000 | 0 | 1.000 | 7 | Additional genes in candidate EG11570 (djlA, b0055) -> chaperone with DnaK | |
| Candidate 0348 | 0.999 | 0 | 0.714 | 7 | Additional genes in candidate G7011 (pphA, b1838) -> protein phosphatase 1 modulates phosphoproteins, signals protein misfolding |
| Group 107 | Genes common to all candidates in group G7321 (yfgM, b2513) -> conserved protein G7320 (bamB, bamB) -> BamB G7319 (der, b2511) -> 50S ribosomal subunit stability factor EG11072 (xseA, b2509) -> exonuclease VII, large subunit | |||||
| Candidate 0351 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10420 (guaA, b2507) -> GMP synthetase EG10421 (guaB, b2508) -> GuaB | |
| Candidate 0350 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10421 (guaB, b2508) -> GuaB EG10453 (hisS, b2514) -> histidyl-tRNA synthetase | |
| Candidate 0253 | 1.000 | 0 | 1.000 | 8 | Additional genes in candidate EG10015 (rodZ, b2516) -> rod shape-determining membrane protein EG10370 (ispG, b2515) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase EG10453 (hisS, b2514) -> histidyl-tRNA synthetase EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase | |
| Candidate 0432 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase G7318 (yfgJ, b2510) -> predicted protein |
| Group 108 | Candidate 0317 | 0.999 | 31 | 0.714 | 7 | Genes in candidate EG10377 (glgA, b3429) -> glycogen synthase EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10379 (glgC, b3430) -> GlgC EG10380 (glgP, b3428) -> GlgP EG10381 (glgX, b3431) -> glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase EG10560 (malP, blu) -> maltodextrin phosphorylase monomer EG10561 (malQ, b3416) -> amylomaltase |
| Group 109 | Genes common to all candidates in group G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein G7670 (yhcD, b3216) -> predicted outer membrane protein | |||||
| Candidate 0258 | 0.999 | 0 | 0.143 | 7 | Additional genes in candidate G7586 (yqiH, b3047) -> putative membrane protein G7638 (yraI, b3143) -> predicted pilin chaperone | |
| Candidate 0318 | 0.999 | 0 | 0.143 | 7 | Additional genes in candidate EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae G7638 (yraI, b3143) -> predicted pilin chaperone | |
| Candidate 0259 | 0.999 | 0 | 0.000 | 7 | Additional genes in candidate G6387 (ybgQ, b0718) -> predicted outer membrane usher protein G7586 (yqiH, b3047) -> putative membrane protein |
| Group 110 | Candidate 0310 | 0.999 | 2 | 1.000 | 7 | Genes in candidate EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10548 (lspA, b0027) -> prolipoprotein signal peptidase II EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 EG11079 (ribF, b0025) -> bifunctional riboflavin kinase / FMN adenylyltransferase EG11080 (fkpB, b0028) -> peptidylprolyl isomerase EG11081 (ispH, b0029) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase G6561 (murJ, b1069) -> lipid II flippase |
| Group 111 | Genes common to all candidates in group EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG11359 (gspO, b3335) -> leader peptidase, integral membrane protein EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12313 (yacF, b0102) -> conserved protein EG12314 (yacG, b0101) -> DNA gyrase inhibitor YacG | |||||
| Candidate 0300 | 0.999 | 0 | 0.714 | 7 | Additional genes in candidate EG10936 (secA, b0098) -> SecA G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase | |
| Candidate 0299 | 0.999 | 0 | 0.429 | 7 | Additional genes in candidate G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase G7539 (pppA, b2972) -> prepilin peptidase | |
| Candidate 0301 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10936 (secA, b0098) -> SecA EG11798 (hofC, b0106) -> protein transport protein HofC |
| Group 112 | Genes common to all candidates in group EG11111 (cspD, b0880) -> DNA replication inhibitor EG11344 (mnmA, b1133) -> tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase EG11345 (hflD, b1132) -> lysogenization regulator G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex G6580 (nudJ, b1134) -> HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional] | |||||
| Candidate 0276 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG11314 (purB, b1131) -> 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional] G6581 (rluE, b1135) -> 23S rRNA pseudouridine 2457 synthase | |
| Candidate 0311 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10489 (icd, b1136) -> Icd G6581 (rluE, b1135) -> 23S rRNA pseudouridine 2457 synthase | |
| Candidate 0336 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10156 (clpA, b0882) -> ClpA EG11314 (purB, b1131) -> 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional] |
| Group 113 | Genes common to all candidates in group G7529 (yggU, b2953) -> conserved protein G7528 (yggT, b2952) -> predicted inner membrane protein G7527 (yggS, b2951) -> predicted enzyme G7526 (yggR, b2950) -> predicted transporter | |||||
| Candidate 0268 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG11779 (trmI, b2960) -> tRNA (m7G46) methyltransferase G7524 (yqgE, b2948) -> predicted protein G7530 (rdgB, b2954) -> RdgB | |
| Candidate 0267 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG11779 (trmI, b2960) -> tRNA (m7G46) methyltransferase G7530 (rdgB, b2954) -> RdgB G7531 (yggW, b2955) -> predicted oxidoreductase | |
| Candidate 0257 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate G7524 (yqgE, b2948) -> predicted protein G7525 (yqgF, b2949) -> predicted Holliday junction resolvase G7530 (rdgB, b2954) -> RdgB | |
| Candidate 0288 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10769 (proC, b0386) -> pyrroline-5-carboxylate reductase monomer G7524 (yqgE, b2948) -> predicted protein G7525 (yqgF, b2949) -> predicted Holliday junction resolvase |
| Group 114 | Genes common to all candidates in group EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB EG12780 (diaA, b3149) -> DnaA initiator-associating factor for replication initiation G7642 (yraM, b3147) -> putative glycosylase G7644 (yraP, b3150) -> lipoprotein | |||||
| Candidate 0285 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 | |
| Candidate 0284 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 G7641 (rsmI, b3146) -> 16S rRNA 2'-O-ribose C1402 methyltransferase | |
| Candidate 0278 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate G7641 (rsmI, b3146) -> 16S rRNA 2'-O-ribose C1402 methyltransferase G7643 (yraN, b3148) -> conserved protein |
| Group 115 | Candidate 0313 | 0.999 | 20 | 0.429 | 7 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C |
| Group 116 | Candidate 0271 | 0.999 | 6 | 0.143 | 7 | Genes in candidate EG11354 (emrA, b2685) -> EmrA Membrane Fusion Protein EG11439 (emrB, b2686) -> EmrB multidrug MFS transporter EG11764 (yibH, b3597) -> putative membrane protein EG11954 (sdsR, b4082) -> predicted membrane fusion protein of efflux pump EG12290 (yiaV, b3586) -> predicted membrane fusion protein (MFP) component of efflux pump, signal anchor EG13283 (emrY, b2367) -> EmrY putative multidrug MFS transporter G7233 (emrK, b2368) -> EmrK putative membrane fusion protein |
| Group 117 | Genes common to all candidates in group G6465 (lolA, b0891) -> periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer EG11112 (aat, b0885) -> leucyl, phenylalanyl-tRNA-protein transferase EG11111 (cspD, b0880) -> DNA replication inhibitor EG10947 (serS, b0893) -> seryl-tRNA synthetase | |||||
| Candidate 0309 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG11032 (trxB, b0888) -> thioredoxin reductase monomer G6464 (ftsK, b0890) -> essential cell division protein FtsK | |
| Candidate 0308 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex G6464 (ftsK, b0890) -> essential cell division protein FtsK | |
| Candidate 0281 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG11032 (trxB, b0888) -> thioredoxin reductase monomer EG12690 (rarA, b0892) -> recombination factor G6464 (ftsK, b0890) -> essential cell division protein FtsK | |
| Candidate 0280 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG12690 (rarA, b0892) -> recombination factor G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex G6464 (ftsK, b0890) -> essential cell division protein FtsK | |
| Candidate 0338 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10156 (clpA, b0882) -> ClpA EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex | |
| Candidate 0337 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10156 (clpA, b0882) -> ClpA EG12690 (rarA, b0892) -> recombination factor G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex |
| Group 118 | Candidate 0304 | 0.999 | 29 | 0.000 | 7 | Genes in candidate EG10567 (manX, b1817) -> ManX EG10568 (manY, b1818) -> ManY EG10569 (manZ, b1819) -> ManZ EG12769 (agaB, b3138) -> AgaB EG12770 (agaC, b3139) -> AgaC G7632 (agaV, b3133) -> PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) G7635 (agaD, b3140) -> AgaD |
| Group 119 | Candidate 0290 | 0.999 | 3 | 0.286 | 7 | Genes in candidate EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG11630 (potG, b0855) -> PotG EG11631 (potH, b0856) -> PotH EG11632 (potI, b0857) -> PotI EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6266 (ybbL, b0490) -> predicted transporter subunit: ATP-binding component of ABC superfamily |
| Group 120 | Candidate 0339 | 0.999 | 0 | 0.571 | 7 | Genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10149 (cheW, b1887) -> CheW EG10987 (tap, b1885) -> Tap EG10988 (tar, b1886) -> Tar EG11018 (trg, b1421) -> Trg |
| Group 121 | Candidate 0343 | 0.999 | 26 | 0.143 | 7 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G6861 (ydgI, b1605) -> ArcD APC transporter G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |
| Group 122 | Candidate 0327 | 0.999 | 11 | 0.000 | 7 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit EG11946 (nrfC, b4072) -> formate-dependent nitrite reductase, 4Fe-4S subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6899 (ydhX, b1671) -> predicted 4Fe-4S ferredoxin-type protein G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein |
| Group 123 | Genes common to all candidates in group EG12298 (yibQ, b3614) -> putative nucleoside (IDP) diphosphatase EG12297 (envC, b3613) -> EnvC murein hydrolase EG12295 (yibN, b3611) -> predicted rhodanese-related sulfurtransferase EG12294 (grxC, b3610) -> oxidized glutaredoxin 3 EG11888 (yibK, b3606) -> predicted rRNA methylase EG10937 (secB, b3609) -> SecB | |||||
| Candidate 0283 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG12296 (gpmM, b3612) -> phosphoglycerate mutase, cofactor independent | |
| Candidate 0282 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG20091 (gpsA, b3608) -> GpsA |
| Group 124 | Genes common to all candidates in group G7690 (yhdP, b3246 (obsolete)) -> conserved membrane protein, predicted transporter G7689 (tldD, b3244) -> protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD EG11299 (rng, b3247) -> ribonuclease G (RNAse G) monomer EG11298 (yhdE, b3248) -> conserved protein EG10610 (mreD, b3249) -> MreD EG10609 (mreC, b3250) -> MreC | |||||
| Candidate 0303 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10608 (mreB, b3251) -> MreB | |
| Candidate 0302 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG11410 (yjgA, b4234) -> putative alpha-helix protein |
| Group 125 | Candidate 0263 | 0.999 | 0 | 1.000 | 7 | Genes in candidate EG12257 (bcsC, bcsC) -> oxidase involved in cellulose synthesis EG12258 (bcsZ, bcsZ) -> endo-1,4-D-glucanase EG12259 (bcsB, bcsB) -> cellulose biosynthesis protein EG12260 (bcsA, bcsA) -> cellulose synthase, catalytic subunit EG12261 (bcsQ, bcsQ) -> predicted cellulose biosynthesis protein EG12263 (bcsE, bcsE) -> conserved protein EG12265 (bcsG, bcsG) -> predicted inner membrane protein |
| Group 126 | Candidate 0266 | 0.999 | 1 | 1.000 | 7 | Genes in candidate EG12060 (napC, b2202) -> cytochrome c protein EG12061 (napB, b2203) -> small subunit of periplasmic nitrate reductase, cytochrome c550 protein EG12062 (napH, b2204) -> ferredoxin-type protein EG12064 (napG, b2205) -> ferredoxin-type protein EG12067 (napA, b2206) -> large subunit of periplasmic nitrate reductase, molybdoprotein EG12068 (napF, b2208) -> ferredoxin-type protein EG12143 (napD, b2207) -> signal peptide-binding chaperone for NapA |
| Group 127 | Candidate 0306 | 0.999 | 0 | 1.000 | 7 | Genes in candidate EG10510 (rpoS, b2741) -> RNA polymerase, sigma S (sigma 38) factor EG10625 (mutS, b2733) -> MutS EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7424 (ftsB, b2748) -> essential cell division protein FtsB |
| Group 128 | Candidate 0322 | 0.999 | 10 | 1.000 | 7 | Genes in candidate EG10277 (fabH, b1091) -> FabH EG10859 (rne, b1084) -> RNase E EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG12606 (fabF, b1095) -> FabF G6567 (nagZ, b1107) -> β-N-acetylhexosaminidase |
| Group 129 | Candidate 0341 | 0.999 | 4 | 1.000 | 7 | Genes in candidate EG10136 (cca, b3056) -> fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase EG10239 (dnaG, b3066) -> DNA primase EG10896 (rpoD, b3067) -> RNA polymerase, sigma 70 (sigma D) factor EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 EG11171 (ygjD, b3064) -> YgjD, target for YeaZ protease EG11673 (folB, b3058) -> FolB EG11674 (ygiH, b3059) -> conserved inner membrane protein |
| Group 130 | Genes common to all candidates in group EG10004 (dfp, b3639) -> Dfp EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG11191 (slmA, b3641) -> cell division inhibitor EG11312 (yicR, b3638) -> hypothetical protein | |||||
| Candidate 0361 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10251 (dut, b3640) -> Dut EG10808 (pyrE, b3642) -> PyrE EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 | |
| Candidate 0360 | 0.999 | 0 | 0.714 | 7 | Additional genes in candidate EG10251 (dut, b3640) -> Dut EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 G7082 (yeeS, b2002) -> CP4-44 prophage; predicted DNA repair protein | |
| Candidate 0363 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10251 (dut, b3640) -> Dut EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 | |
| Candidate 0364 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10251 (dut, b3640) -> Dut EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10863 (rph, b3643) -> RNase PH monomer | |
| Candidate 0362 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10251 (dut, b3640) -> Dut EG10808 (pyrE, b3642) -> PyrE EG10863 (rph, b3643) -> RNase PH monomer | |
| Candidate 0356 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10808 (pyrE, b3642) -> PyrE EG10863 (rph, b3643) -> RNase PH monomer EG11192 (yicC, b3644) -> conserved protein | |
| Candidate 0355 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10808 (pyrE, b3642) -> PyrE EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG11192 (yicC, b3644) -> conserved protein |
| Group 131 | Candidate 0265 | 0.999 | 0 | 0.000 | 7 | Genes in candidate EG12140 (ydhB, b1659) -> protein with similarity to transcriptional regulators G6181 (yahB, b0316) -> predicted DNA-binding transcriptional regulator LYSR-type G6274 (allS, b0504) -> AllS transcriptional activator G7088 (yeeY, b2015) -> predicted DNA-binding transcriptional regulator G7619 (yhaJ, b3105) -> predicted DNA-binding transcriptional regulator LYSR-type G7620 (yhaK, b3106) -> bicupin-related protein G7756 (yhhW, b3439) -> pirin-like protein |
| Group 132 | Candidate 0328 | 0.999 | 1 | 0.143 | 7 | Genes in candidate EG10223 (deoR, b0840) -> DeoR transcriptional repressor EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism |
| Group 133 | Candidate 0312 | 0.999 | 11 | 0.143 | 7 | Genes in candidate EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10481 (hycH, b2718) -> protein required for maturation of hydrogenase 3 G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H G7306 (hyfI, b2489) -> hydrogenase 4, small subunit |
| Group 134 | Genes common to all candidates in group EG10004 (dfp, b3639) -> Dfp EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase | |||||
| Candidate 0354 | 0.999 | 1 | 0.857 | 7 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase EG10965 (gmk, b3648) -> Gmk EG11192 (yicC, b3644) -> conserved protein | |
| Candidate 0353 | 0.999 | 5 | 0.857 | 7 | Additional genes in candidate EG10829 (recG, b3652) -> RecG DNA helicase EG10965 (gmk, b3648) -> Gmk G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0358 | 0.999 | 10 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10965 (gmk, b3648) -> Gmk G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A | |
| Candidate 0359 | 0.999 | 3 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10965 (gmk, b3648) -> Gmk EG11192 (yicC, b3644) -> conserved protein | |
| Candidate 0357 | 0.999 | 2 | 0.857 | 7 | Additional genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG11192 (yicC, b3644) -> conserved protein EG11440 (def, b3287) -> peptide deformylase |
| Group 135 | Genes common to all candidates in group G7596 (ygjG, b3073) -> putrescine aminotransferase / diamine transaminase EG10066 (argD, b3359) -> ArgD EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10064 (argB, b3959) -> acetylglutamate kinase monomer | |||||
| Candidate 0345 | 0.999 | 24 | 0.714 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10068 (argG, b3172) -> ArgG G6944 (astC, b1748) -> AstC | |
| Candidate 0344 | 0.999 | 21 | 0.429 | 7 | Additional genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI G6944 (astC, b1748) -> AstC | |
| Candidate 0346 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10063 (argA, b2818) -> ArgA EG10068 (argG, b3172) -> ArgG G6944 (astC, b1748) -> AstC | |
| Candidate 0500 | 0.999 | 2 | 1.000 | 6 | Additional genes in candidate EG10068 (argG, b3172) -> ArgG EG10070 (argR, b3237) -> ArgR |
| Group 136 | Genes common to all candidates in group EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding | |||||
| Candidate 0326 | 0.999 | 11 | 1.000 | 7 | Additional genes in candidate EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10686 (parC, b3019) -> topoisomerase IV subunit A EG10687 (parE, b3030) -> topoisomerase IV subunit B | |
| Candidate 0325 | 0.999 | 8 | 0.857 | 7 | Additional genes in candidate EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10687 (parE, b3030) -> topoisomerase IV subunit B G7313 (hda, b2496) -> regulator of DnaA that prevents premature reinitiation of DNA replication | |
| Candidate 0466 | 1.000 | 0 | 0.833 | 6 | Additional genes in candidate EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase G7313 (hda, b2496) -> regulator of DnaA that prevents premature reinitiation of DNA replication |
| Group 137 | Genes common to all candidates in group EG11787 (gmd, b2053) -> GDP-mannose 4,6-dehydratase EG11978 (rfbA, b2039) -> dTDP-glucose pyrophosphorylase EG11979 (rfbC, b2038) -> dTDP-4-dehydrorhamnose 3,5-epimerase EG12411 (rfbD, b2040) -> dTDP-4-dehydrorhamnose reductase | |||||
| Candidate 0269 | 1.000 | 32 | 0.429 | 7 | Additional genes in candidate EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0334 | 0.999 | 31 | 0.714 | 7 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG12412 (rfbB, b2041) -> RmlB | |
| Candidate 0479 | 0.999 | 16 | 1.000 | 6 | Additional genes in candidate EG10161 (cpsB, b2049) -> mannose-1-phosphate guanylyltransferase EG11788 (fcl, b2052) -> Fcl |
| Group 138 | Genes common to all candidates in group EG10218 (dedD, b2314) -> cell division protein DedD EG10327 (folC, b2315) -> bifunctional folypolyglutamate synthetase / dihydrofolate synthetase EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG11059 (usg, b2319) -> predicted semialdehyde dehydrogenase | |||||
| Candidate 0332 | 0.999 | 1 | 1.000 | 7 | Additional genes in candidate EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG10217 (accD, b2316) -> acetyl-CoA carboxyltransferase, β subunit EG10794 (purF, b2312) -> PurF | |
| Candidate 0331 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG10794 (purF, b2312) -> PurF G7200 (yfcL, b2325) -> predicted protein | |
| Candidate 0468 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate G0-9461 (pdxB, b2320) -> erythronate-4-phosphate dehydrogenase G7200 (yfcL, b2325) -> predicted protein |
| Group 139 | Genes common to all candidates in group EG11573 (thiP, b0067) -> SfuB EG10929 (sbp, b3917) -> Sbp EG10198 (cysW, b2423) -> CysW EG10197 (cysU, b2424) -> CysU EG10183 (cysA, b2422) -> CysA | |||||
| Candidate 0329 | 1.000 | 5 | 0.429 | 7 | Additional genes in candidate EG10195 (cysP, b2425) -> CysP G6137 (afuB, b0263) -> AfuB | |
| Candidate 0476 | 1.000 | 0 | 0.833 | 6 | Additional genes in candidate G6266 (ybbL, b0490) -> predicted transporter subunit: ATP-binding component of ABC superfamily |
| Group 140 | Genes common to all candidates in group EG12125 (hisQ, b2308) -> HisQ EG11627 (artM, b0861) -> ArtM EG11626 (artQ, b0862) -> ArtQ EG11624 (artP, b0864) -> ArtP EG10007 (hisM, b2307) -> HisM | |||||
| Candidate 0505 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate G7037 (yecS, b1918) -> predicted transporter subunit: membrane component of ABC superfamily | |
| Candidate 0352 | 0.999 | 4 | 0.143 | 7 | Additional genes in candidate EG11625 (artI, b0863) -> ArtI EG11628 (artJ, b0860) -> ArtJ |
| Group 141 | Genes common to all candidates in group G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase G7856 (ulaA, b4193) -> UlaA EG12495 (ulaC, b4195) -> UlaC EG12494 (ulaB, b4194) -> UlaB | |||||
| Candidate 0262 | 0.999 | 13 | 0.429 | 7 | Additional genes in candidate EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase | |
| Candidate 0373 | 0.999 | 12 | 1.000 | 6 | Additional genes in candidate G7855 (ulaG, b4192) -> L-ascorbate 6-phosphate lactonase |
| Group 142 | Genes common to all candidates in group G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase EG12286 (sgbU, b3582) -> predicted L-xylulose 5-phosphate 3-epimerase EG12285 (sgbH, b3581) -> 3-keto-L-gulonate 6-phosphate decarboxylase | |||||
| Candidate 0347 | 0.999 | 19 | 0.000 | 7 | Additional genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase | |
| Candidate 0376 | 0.999 | 14 | 0.333 | 6 | Additional genes in candidate EG12494 (ulaB, b4194) -> UlaB |
| Group 143 | Genes common to all candidates in group EG12878 (zapA, b2910) -> protein that localizes to the cytokinetic ring EG11442 (gcvT, b2905) -> aminomethyltransferase EG11333 (visC, b2906) -> predicted oxidoreductase, FAD/NAD(P)-binding domain EG11324 (ubiH, b2907) -> 2-octaprenyl-6-methoxyphenol hydroxylase EG11323 (ygfB, b2909) -> predicted protein | |||||
| Candidate 0441 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG10371 (gcvH, b2904) -> lipoyl-GcvH-protein | |
| Candidate 0293 | 0.999 | 0 | 0.714 | 7 | Additional genes in candidate EG10697 (pepP, b2908) -> PepP EG11158 (ygfA, b2912) -> predicted ligase |
| Group 144 | Genes common to all candidates in group EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I EG11580 (ybiB, b0800) -> predicted transferase/phosphorylase | |||||
| Candidate 0406 | 0.999 | 10 | 1.000 | 6 | Additional genes in candidate EG10683 (pabB, b1812) -> PabB EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0393 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0296 | 0.999 | 18 | 1.000 | 7 | Additional genes in candidate EG10682 (pabA, b3360) -> PabA EG10683 (pabB, b1812) -> PabB EG12362 (menF, b2265) -> MenF |
| Group 145 | Genes common to all candidates in group EG10435 (hflC, b4175) -> regulator of FtsH protease EG10436 (hflK, b4174) -> regulator of FtsH protease EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins | |||||
| Candidate 0435 | 0.999 | 5 | 1.000 | 6 | Additional genes in candidate EG10790 (purA, b4177) -> PurA EG11259 (rnr, b4179) -> RNase R | |
| Candidate 0434 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11259 (rnr, b4179) -> RNase R EG11758 (yjeF, b4167) -> predicted carbohydrate kinase | |
| Candidate 0315 | 0.999 | 5 | 1.000 | 7 | Additional genes in candidate EG10790 (purA, b4177) -> PurA EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity |
| Group 146 | Genes common to all candidates in group EG10200 (cytR, b3934) -> CytR EG10525 (lacI, b0345) -> LacI transcriptional repressor EG10800 (purR, b1658) -> PurR EG10819 (rbsR, b3753) -> RbsR transcriptional repressor | |||||
| Candidate 0493 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate EG10087 (ascG, b2714) -> AscG transcriptional repressor G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type | |
| Candidate 0472 | 0.999 | 1 | 0.000 | 6 | Additional genes in candidate EG10254 (ebgR, b3075) -> EbgR transcriptional repressor G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type | |
| Candidate 0342 | 0.999 | 2 | 0.000 | 7 | Additional genes in candidate EG10087 (ascG, b2714) -> AscG transcriptional repressor EG10364 (galR, b2837) -> GalR transcriptional dual regulator EG10365 (galS, b2151) -> GalS transcriptional dual regulator |
| Group 147 | Genes common to all candidates in group EG10870 (rplI, b4203) -> 50S ribosomal subunit protein L9 EG10905 (rpsF, b4200) -> 30S ribosomal subunit protein S6 EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer | |||||
| Candidate 0402 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10764 (priB, b4201) -> PriB EG11259 (rnr, b4179) -> RNase R | |
| Candidate 0465 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10236 (dnaB, b4052) -> DnaB EG10764 (priB, b4201) -> PriB | |
| Candidate 0577 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11296 (radA, b4389) -> DNA recombination protein | |
| Candidate 0324 | 0.999 | 2 | 0.857 | 7 | Additional genes in candidate EG10236 (dnaB, b4052) -> DnaB EG10790 (purA, b4177) -> PurA EG11786 (yfiF, b2581) -> predicted methyltransferase | |
| Candidate 0287 | 0.999 | 3 | 0.857 | 7 | Additional genes in candidate EG10790 (purA, b4177) -> PurA EG11259 (rnr, b4179) -> RNase R EG11786 (yfiF, b2581) -> predicted methyltransferase |
| Group 148 | Genes common to all candidates in group EG10666 (nusB, b0416) -> transcription antitermination protein NusB EG11321 (ribD, b0414) -> fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase EG11322 (ribE, b0415) -> RibE | |||||
| Candidate 0409 | 1.000 | 3 | 1.000 | 6 | Additional genes in candidate EG11320 (nrdR, b0413) -> NrdR EG11406 (ribC, b1662) -> RibC G6234 (thiL, b0417) -> thiamine monophosphate kinase | |
| Candidate 0438 | 1.000 | 3 | 1.000 | 6 | Additional genes in candidate EG10408 (glyA, b2551) -> GlyA EG11320 (nrdR, b0413) -> NrdR EG11406 (ribC, b1662) -> RibC | |
| Candidate 0410 | 1.000 | 0 | 1.000 | 6 | Additional genes in candidate EG10704 (pgpA, b0418) -> phosphatidylglycerophosphatase A EG11320 (nrdR, b0413) -> NrdR G6234 (thiL, b0417) -> thiamine monophosphate kinase | |
| Candidate 0431 | 1.000 | 4 | 1.000 | 6 | Additional genes in candidate EG10465 (ribB, b3041) -> 3,4-dihydroxy-2-butanone 4-phosphate synthase EG11320 (nrdR, b0413) -> NrdR EG11406 (ribC, b1662) -> RibC | |
| Candidate 0430 | 1.000 | 8 | 1.000 | 6 | Additional genes in candidate EG10465 (ribB, b3041) -> 3,4-dihydroxy-2-butanone 4-phosphate synthase EG11331 (ribA, b1277) -> GTP cyclohydrolase II EG11406 (ribC, b1662) -> RibC |
| Group 149 | Candidate 0423 | 1.000 | 7 | 0.667 | 6 | Genes in candidate EG10536 (livF, b3454) -> LivF EG10537 (livG, b3455) -> LivG EG10538 (livH, b3457) -> LivH EG10539 (livJ, b3460) -> LivJ EG10540 (livK, b3458) -> LivK, leucine binding protein of the high-affinity branched-chain amino acid transport system EG10541 (livM, b3456) -> LivM |
| Group 150 | Genes common to all candidates in group G6851 (ynfK, b1593) -> predicted dethiobiotin synthetase EG10121 (bioF, bioF) -> 8-amino-7-oxononanoate synthase monomer EG10120 (bioD, bioD) -> dethiobiotin synthetase monomer EG10119 (bioC, bioC) -> BioC methyltransferase EG10118 (bioB, bioB) -> biotin synthase monomer | |||||
| Candidate 0485 | 1.000 | 7 | 0.667 | 6 | Additional genes in candidate EG10117 (bioA, bioA) -> adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer | |
| Candidate 0484 | 1.000 | 4 | 0.500 | 6 | Additional genes in candidate EG10512 (kbl, b3617) -> Kbl |
| Group 151 | Candidate 0384 | 1.000 | 0 | 0.167 | 6 | Genes in candidate EG11419 (bcr, bcr) -> Bcr multidrug MFS transporter EG11693 (emrD, b3673) -> EmrD multidrug MFS transporter EG11720 (mdtL, b3710) -> YidY drug MFS transporter EG12141 (ydhC, b1660) -> YdhC drug MFS transporter EG12576 (mdtM, b4337) -> MdtM drug MFS transporter G6440 (cmr, b0842) -> MdfA/Cmr MFS multidrug transporter |
| Group 152 | Candidate 0411 | 1.000 | 13 | 0.500 | 6 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12381 (nrdF, b2676) -> NrdF EG20257 (nrdE, b2675) -> NrdE G7401 (nrdH, b2673) -> glutaredoxin-like protein G7402 (nrdI, b2674) -> flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase |
| Group 153 | Candidate 0418 | 1.000 | 18 | 0.000 | 6 | Genes in candidate EG10578 (melB, b4120) -> MelB GPH transporter EG11658 (uidB, b1616) -> UidB glucuronides GPH transporter EG11686 (yicJ, b3657) -> YicJ GPH transporter EG11841 (yihO, b3876) -> YihO GPH transporter EG11842 (yihP, b3877) -> YihP GPH transporter G6142 (yagG, b0270) -> YagG GPH Transporter |
| Group 154 | Candidate 0504 | 1.000 | 5 | 0.333 | 6 | Genes in candidate EG10012 (cydC, b0886) -> CydC EG10173 (cydA, b0733) -> cytochrome bd-I terminal oxidase subunit I EG10174 (cydB, b0734) -> cytochrome bd-I terminal oxidase subunit II EG11379 (appB, b0979) -> cytochrome bd-II terminal oxidase subunit II EG11380 (appC, b0978) -> cytochrome bd-II terminal oxidase subunit I EG11405 (cydD, b0887) -> CydD |
| Group 155 | Candidate 0380 | 1.000 | 1 | 0.000 | 6 | Genes in candidate EG11826 (etk, b0981) -> autophosphorylating protein tyrosine kinase G6503 (etp, b0982) -> phosphotyrosine-protein phosphatase G6504 (gfcE, b0983) -> predicted exopolysaccharide export protein G7105 (wzc, b2060) -> tyrosine kinase involved in colanic acid biosynthesis G7106 (wzb, b2061) -> tyrosine phosphatase G7107 (wza, b2062) -> lipoprotein required for capsular polysaccharide translocation through the outer membrane |
| Group 156 | Candidate 0382 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G7435 (ygcQ, b2769) -> predicted flavoprotein G7436 (ygcR, b2770) -> predicted flavoprotein |
| Group 157 | Candidate 0439 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10404 (gltD, b3213) -> glutamate synthase, small subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit G7145 (yeiT, b2146) -> NADH-dependent dihydropyrimidine dehydrogenase subunit G7497 (ygfK, b2878) -> putative oxidoreductase Fe-S subunit; possible component of selenate reductase G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit |
| Group 158 | Candidate 0403 | 1.000 | 0 | 0.833 | 6 | Genes in candidate EG10723 (phnN, b4094) -> ribose 1,5-bisphosphokinase EG10863 (rph, b3643) -> RNase PH monomer EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit EG10965 (gmk, b3648) -> Gmk EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] EG11192 (yicC, b3644) -> conserved protein |
| Group 159 | Candidate 0371 | 1.000 | 0 | 0.667 | 6 | Genes in candidate EG12780 (diaA, b3149) -> DnaA initiator-associating factor for replication initiation G6106 (lpcA, b0222) -> D-sedoheptulose 7-phosphate isomerase G7641 (rsmI, b3146) -> 16S rRNA 2'-O-ribose C1402 methyltransferase G7642 (yraM, b3147) -> putative glycosylase G7643 (yraN, b3148) -> conserved protein G7644 (yraP, b3150) -> lipoprotein |
| Group 160 | Candidate 0483 | 1.000 | 5 | 0.000 | 6 | Genes in candidate EG10124 (bisC, bisC) -> biotin sulfoxide reductase EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A EG11814 (torA, b0997) -> trimethylamine N-oxide reductase, catalytic subunit G6845 (ynfE, b1587) -> oxidoreductase subunit G6846 (ynfF, b1588) -> oxidoreductase subunit G7022 (torZ, bisZ) -> trimethylamine N-oxide reductase III, TorZ subunit |
| Group 161 | Candidate 0368 | 1.000 | 1 | 0.000 | 6 | Genes in candidate G6212 (insC-1, b0360) -> IS2 element protein InsA G6724 (insC-2, b1403) -> IS2 element protein InsA G7077 (insC-3, b1997) -> IS2 element protein InsA G7481 (insC-4, b2861) -> IS2 element protein InsA G7583 (insC-5, b3044) -> IS2 element protein InsA G7894 (insC-6, b4272) -> IS2 element protein InsA |
| Group 162 | Genes common to all candidates in group EG11153 (rimM, b2608) -> ribosome maturation protein EG11023 (trmD, b2607) -> TrmD EG10915 (rpsP, b2609) -> 30S ribosomal subunit protein S16 EG10880 (rplS, b2606) -> 50S ribosomal subunit protein L19 | |||||
| Candidate 0453 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) EG10346 (ftsY, b3464) -> SRP receptor | |
| Candidate 0452 | 1.000 | 12 | 1.000 | 6 | Additional genes in candidate EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) EG10857 (rnc, b2567) -> RNase III | |
| Candidate 0320 | 1.000 | 3 | 1.000 | 7 | Additional genes in candidate EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) EG12442 (yfjD, b2612 (obsolete)) -> predicted inner membrane protein G7355 (ypjD, b2611) -> predicted inner membrane protein | |
| Candidate 0576 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG12693 (nudL, b1813) -> predicted NUDIX hydrolase |
| Group 163 | Genes common to all candidates in group EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair EG11137 (yebC, b1864) -> conserved protein RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase | |||||
| Candidate 0405 | 1.000 | 0 | 0.833 | 6 | Additional genes in candidate EG10684 (pal, b0741) -> Pal G7068 (yeeN, b1983) -> conserved protein | |
| Candidate 0487 | 1.000 | 0 | 0.833 | 6 | Additional genes in candidate EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase G7068 (yeeN, b1983) -> conserved protein | |
| Candidate 0488 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase G7020 (cmoA, b1870) -> predicted methyltransferase |
| Group 164 | Genes common to all candidates in group G81 (uxaC, b3092) -> D-glucuronate isomerase / D-galacturonate isomerase G6816 (ydfI, b1542) -> predicted mannonate dehydrogenase EG20248 (uxuB, b4323) -> D-mannonate oxidoreductase EG12036 (yeiQ, b2172) -> predicted dehydrogenase, NAD-dependent EG11065 (uxaB, b1521) -> altronate oxidoreductase | |||||
| Candidate 0413 | 1.000 | 2 | 0.167 | 6 | Additional genes in candidate EG10616 (mtlD, b3600) -> mannitol-1-phosphate 5-dehydrogenase | |
| Candidate 0391 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate EG12734 (uxaA, b3091) -> D-altronate dehydratase |
| Group 165 | Genes common to all candidates in group EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG12200 (yegD, b2069) -> actin family protein G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription | |||||
| Candidate 0463 | 0.999 | 6 | 0.833 | 6 | Additional genes in candidate EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 EG12193 (cbpA, b1000) -> CbpA monomer | |
| Candidate 0462 | 0.999 | 2 | 1.000 | 6 | Additional genes in candidate EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |
| Candidate 0464 | 1.000 | 2 | 0.833 | 6 | Additional genes in candidate EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG12193 (cbpA, b1000) -> CbpA monomer |
| Group 166 | Genes common to all candidates in group EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10543 (lpd, b0116) -> E3 monomer | |||||
| Candidate 0421 | 0.999 | 17 | 1.000 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6174 (ykgC, b0304) -> predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain | |
| Candidate 0420 | 1.000 | 15 | 0.833 | 6 | Additional genes in candidate EG10980 (sucB, b0727) -> SucB G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants | |
| Candidate 0446 | 0.999 | 22 | 1.000 | 6 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10980 (sucB, b0727) -> SucB | |
| Candidate 0422 | 0.999 | 13 | 0.833 | 6 | Additional genes in candidate EG10576 (mdh, b3236) -> Mdh G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 167 | Candidate 0397 | 0.999 | 0 | 0.000 | 6 | Genes in candidate EG10846 (rhsA, b3593) -> RhsA protein in rhs element EG10847 (rhsB, b3482) -> RhsB protein in rhs element EG10848 (rhsC, b0700) -> RhsC protein in rhs element EG10849 (rhsD, b0497) -> RhsD protein in rhs element EG11766 (yibJ, b3595) -> predicted Rhs-family protein G6271 (ylbH, b0499) -> conserved protein, rhs-like |
| Group 168 | Genes common to all candidates in group EG10187 (cysE, b3607) -> serine acetyltransferase monomer EG10196 (cysS, b0526) -> cysteinyl-tRNA synthetase EG11296 (radA, b4389) -> DNA recombination protein G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer | |||||
| Candidate 0474 | 0.999 | 3 | 1.000 | 6 | Additional genes in candidate EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer G7103 (wcaB, b2058) -> predicted colanic acid biosynthesis acyl transferase | |
| Candidate 0473 | 0.999 | 4 | 1.000 | 6 | Additional genes in candidate EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer | |
| Candidate 0475 | 0.999 | 3 | 1.000 | 6 | Additional genes in candidate EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase G7103 (wcaB, b2058) -> predicted colanic acid biosynthesis acyl transferase |
| Group 169 | Genes common to all candidates in group EG11031 (trxA, b3781) -> oxidized thioredoxin EG10845 (rho, b3783) -> transcription termination factor Rho monomer; polarity suppressor EG10434 (hemY, b3802) -> predicted protoheme IX synthesis protein EG10433 (hemX, b3803) -> conserved protein EG10430 (hemD, b3804) -> uroporphyrinogen III synthase | |||||
| Candidate 0445 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10334 (fre, b3844) -> FMN reductase | |
| Candidate 0477 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10170 (cyaA, b3806) -> adenylate cyclase |
| Group 170 | Genes common to all candidates in group EG11009 (tolC, b3035) -> TolC outer membrane channel G7578 (yqiA, b3031) -> esterase G7579 (cpdA, b3032) -> cAMP phosphodiesterase G7580 (yqiB, b3033) -> predicted dehydrogenase | |||||
| Candidate 0294 | 0.999 | 0 | 1.000 | 7 | Additional genes in candidate EG10686 (parC, b3019) -> topoisomerase IV subunit A EG10687 (parE, b3030) -> topoisomerase IV subunit B EG12633 (nudF, b3034) -> ADP- sugar pyrophosphatase | |
| Candidate 0395 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG12410 (nudK, b2467) -> nucleotide-sugar hydrolase EG12633 (nudF, b3034) -> ADP- sugar pyrophosphatase | |
| Candidate 0566 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7590 (rfaE, b3052) -> fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
| Group 171 | Genes common to all candidates in group G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex EG11345 (hflD, b1132) -> lysogenization regulator EG11111 (cspD, b0880) -> DNA replication inhibitor EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10156 (clpA, b0882) -> ClpA | |||||
| Candidate 0481 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11112 (aat, b0885) -> leucyl, phenylalanyl-tRNA-protein transferase | |
| Candidate 0480 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11314 (purB, b1131) -> 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional] |
| Group 172 | Genes common to all candidates in group G6100 (yafS, b0213) -> predicted S-adenosyl-L-methionine-dependent methyltransferase G6099 (gloB, b0212) -> glyoxalase II EG10860 (rnhA, b0214) -> RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication EG10246 (mltD, b0211) -> MltD membrane-bound lytic murein transglycosylase D EG10243 (dnaQ, b0215) -> DNA polymerase III, ε subunit | |||||
| Candidate 0461 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11650 (yafD, b0209) -> conserved protein | |
| Candidate 0460 | 0.999 | 0 | 0.833 | 6 | Additional genes in candidate G7016 (exoX, b1844) -> exonuclease X |
| Group 173 | Genes common to all candidates in group EG10284 (fdhE, b3891) -> formate dehydrogenase formation protein EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11856 (fdoI, b3892) -> formate dehydrogenase-O, γ subunit EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit | |||||
| Candidate 0455 | 0.999 | 0 | 0.333 | 6 | Additional genes in candidate EG10941 (selA, b3591) -> selenocysteine synthase monomer EG11229 (fdnI, b1476) -> formate dehydrogenase N, γ subunit | |
| Candidate 0454 | 0.999 | 0 | 0.167 | 6 | Additional genes in candidate EG11229 (fdnI, b1476) -> formate dehydrogenase N, γ subunit EG11799 (hybA, b2996) -> hydrogenase 2 4Fe-4S ferredoxin-type component | |
| Candidate 0456 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG10941 (selA, b3591) -> selenocysteine synthase monomer EG10942 (selB, b3590) -> selenocysteyl-tRNA-specific translation elongation factor |
| Group 174 | Candidate 0394 | 0.999 | 4 | 1.000 | 6 | Genes in candidate EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12095 (secG, b3175) -> SecG EG50011 (folP, b3177) -> FolP |
| Group 175 | Candidate 0386 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG11314 (purB, b1131) -> 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional] EG11344 (mnmA, b1133) -> tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase EG11345 (hflD, b1132) -> lysogenization regulator EG11430 (ycfD, b1128) -> conserved protein G6580 (nudJ, b1134) -> HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional] G6581 (rluE, b1135) -> 23S rRNA pseudouridine 2457 synthase |
| Group 176 | Genes common to all candidates in group EG11191 (slmA, b3641) -> cell division inhibitor EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG10004 (dfp, b3639) -> Dfp | |||||
| Candidate 0511 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase | |
| Candidate 0510 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11192 (yicC, b3644) -> conserved protein |
| Group 177 | Genes common to all candidates in group G7200 (yfcL, b2325) -> predicted protein G7199 (mnmC, b2324) -> 5-methylaminomethyl-2-thiouridine methyltransferase G0-9461 (pdxB, b2320) -> erythronate-4-phosphate dehydrogenase EG11059 (usg, b2319) -> predicted semialdehyde dehydrogenase EG10274 (fabB, b2323) -> FabB | |||||
| Candidate 0457 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate G7201 (yfcM, b2326) -> putative transporting ATPase | |
| Candidate 0469 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10218 (dedD, b2314) -> cell division protein DedD |
| Group 178 | Genes common to all candidates in group EG12113 (hofQ, b3391) -> protein involved in utilization of DNA as a carbon source EG11183 (damX, b3388) -> cell division protein DamX EG10204 (dam, b3387) -> DNA adenine methylase EG10081 (aroK, b3390) -> shikimate kinase I EG10074 (aroB, b3389) -> 3-dehydroquinate synthase | |||||
| Candidate 0496 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10748 (mrcA, b3396) -> peptidoglycan synthetase; penicillin-binding protein 1A | |
| Candidate 0495 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate M004 (rpe, b3386) -> ribulose phosphate 3-epimerase |
| Group 179 | Genes common to all candidates in group G7475 (ygeK, b2855) -> predicted DNA-binding transcriptional regulator EG11140 (uvrY, b1914) -> UvrY- Phosphorylated transcriptional regulator EG11103 (fimZ, b0535) -> FimZ transcriptional regulator EG11051 (uhpA, b3669) -> UhpA-Phosphorylated EG10821 (rcsB, b2217) -> RcsB | |||||
| Candidate 0399 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate EG11052 (uhpB, b3668) -> UhpB sensory histidine kinase - phosphorylated | |
| Candidate 0398 | 0.999 | 1 | 0.333 | 6 | Additional genes in candidate EG11609 (evgA, b2369) -> EvgA-Phosphorylated transcriptional activator |
| Group 180 | Genes common to all candidates in group EG10508 (ispA, b0421) -> geranyl diphosphate synthase / farnesyl diphosphate synthase EG10666 (nusB, b0416) -> transcription antitermination protein NusB EG11072 (xseA, b2509) -> exonuclease VII, large subunit EG11098 (xseB, b0422) -> exonuclease VII, small subunit | |||||
| Candidate 0499 | 0.999 | 6 | 1.000 | 6 | Additional genes in candidate EG10070 (argR, b3237) -> ArgR EG10831 (recN, b2616) -> protein used in recombination and DNA repair | |
| Candidate 0425 | 0.999 | 7 | 1.000 | 6 | Additional genes in candidate EG10831 (recN, b2616) -> protein used in recombination and DNA repair G7248 (ypdF, b2385) -> aminopeptidase | |
| Candidate 0498 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10070 (argR, b3237) -> ArgR G6237 (dxs, b0420) -> Dxs |
| Group 181 | Candidate 0389 | 0.999 | 0 | 0.167 | 6 | Genes in candidate EG11176 (garR, b3125) -> tartronate semialdehyde reductase EG11583 (gcl, b0507) -> Gcl G6277 (hyi, b0508) -> Hyi G6278 (glxR, b0509) -> tartronate semialdehyde reductase 2 G6652 (ycjR, b1314) -> predicted enzyme G7420 (ygbM, b2739) -> conserved protein |
| Group 182 | Genes common to all candidates in group EG11408 (dadX, b1190) -> DadX EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 EG10905 (rpsF, b4200) -> 30S ribosomal subunit protein S6 EG10870 (rplI, b4203) -> 50S ribosomal subunit protein L9 EG10001 (alr, b4053) -> alanine racemase 1, PLP-binding, biosynthetic | |||||
| Candidate 0513 | 0.999 | 2 | 0.667 | 6 | Additional genes in candidate EG10236 (dnaB, b4052) -> DnaB | |
| Candidate 0512 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG11296 (radA, b4389) -> DNA recombination protein |
| Group 183 | Genes common to all candidates in group G6478 (ssuA, b0936) -> SsuA G6476 (ssuC, b0934) -> SsuC G6219 (tauC, b0367) -> TauC G6217 (tauA, b0365) -> TauA EG12358 (ssuB, b0933) -> SsuB | |||||
| Candidate 0375 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate G6218 (tauB, b0366) -> TauB | |
| Candidate 0374 | 0.999 | 1 | 0.500 | 6 | Additional genes in candidate G6477 (ssuD, b0935) -> alkanesulfonate monooxygenase |
| Group 184 | Candidate 0379 | 0.999 | 1 | 0.333 | 6 | Genes in candidate EG11826 (etk, b0981) -> autophosphorylating protein tyrosine kinase G6504 (gfcE, b0983) -> predicted exopolysaccharide export protein G7097 (wzxC, b2046) -> WzxC G7098 (wcaJ, b2047) -> predicted colanic acid biosynthsis UDP-glucose lipid carrier transferase G7105 (wzc, b2060) -> tyrosine kinase involved in colanic acid biosynthesis G7107 (wza, b2062) -> lipoprotein required for capsular polysaccharide translocation through the outer membrane |
| Group 185 | Genes common to all candidates in group EG10473 (hyaF, b0977) -> protein involved in nickel incorporation into hydrogenase 1 proteins EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit | |||||
| Candidate 0429 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10472 (hyaE, b0976) -> protein involved in quality control of HyaA | |
| Candidate 0428 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 |
| Group 186 | Genes common to all candidates in group EG10317 (fis, b3261) -> Fis EG10387 (glnL, b3869) -> NtrB EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase | |||||
| Candidate 0448 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome G7409 (ygaD, b2700) -> conserved protein | |
| Candidate 0447 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG11645 (ydeJ, b1537) -> conserved protein G7409 (ygaD, b2700) -> conserved protein | |
| Candidate 0449 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome |
| Group 187 | Genes common to all candidates in group EG12125 (hisQ, b2308) -> HisQ EG11628 (artJ, b0860) -> ArtJ EG11625 (artI, b0863) -> ArtI EG10072 (argT, b2310) -> ArgT EG10007 (hisM, b2307) -> HisM | |||||
| Candidate 0507 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate EG11626 (artQ, b0862) -> ArtQ | |
| Candidate 0506 | 0.999 | 2 | 0.333 | 6 | Additional genes in candidate EG12124 (hisJ, b2309) -> HisJ |
| Group 188 | Genes common to all candidates in group EG10610 (mreD, b3249) -> MreD EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr G7690 (yhdP, b3246 (obsolete)) -> conserved membrane protein, predicted transporter | |||||
| Candidate 0415 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism | |
| Candidate 0414 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11410 (yjgA, b4234) -> putative alpha-helix protein EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism | |
| Candidate 0416 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10609 (mreC, b3250) -> MreC EG11410 (yjgA, b4234) -> putative alpha-helix protein |
| Group 189 | Candidate 0443 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG10340 (ftsE, b3463) -> cell division protein FtsE EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10345 (ftsX, b3462) -> cell division protein FtsX EG10346 (ftsY, b3464) -> SRP receptor EG10897 (rpoH, b3461) -> RNA polymerase, sigma 32 (sigma H) factor EG12212 (yhhL, b3466) -> conserved inner membrane protein |
| Group 190 | Candidate 0494 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG10077 (aroE, b3281) -> shikimate dehydrogenase EG11019 (trkA, b3290) -> NAD-binding component of TrK potassium transporter EG11605 (smg, b3284) -> conserved protein G7696 (yrdA, b3279) -> conserved protein G7697 (yrdB, b3280) -> conserved protein G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 191 | Candidate 0378 | 0.999 | 0 | 0.000 | 6 | Genes in candidate EG11924 (yjbF, b4027) -> predicted lipoprotein EG11925 (yjbG, b4028) -> conserved protein EG11926 (yjbH, b4029) -> predicted porin G6505 (gfcD, b0984) -> putative lipoprotein G6506 (gfcC, b0985) -> conserved protein G6507 (gfcB, b0986) -> predicted outer membrane lipoprotein |
| Group 192 | Genes common to all candidates in group G7676 (nanK, b3222) -> N-acetylmannosamine kinase G7344 (yphH, b2550) -> predicted DNA-binding transcriptional regulator, NAGC-like G6852 (dgsA, b1594) -> DgsA transcriptional repressor EG11956 (alsK, b4084) -> D-allose kinase EG11288 (mak, b0394) -> manno(fructo)kinase | |||||
| Candidate 0387 | 0.999 | 2 | 0.167 | 6 | Additional genes in candidate G6576 (nagK, b1119) -> N-acetyl-D-glucosamine kinase | |
| Candidate 0412 | 0.999 | 4 | 0.333 | 6 | Additional genes in candidate EG10636 (nagC, b0676) -> NagC transcriptional dual regulator |
| Group 193 | Candidate 0367 | 0.999 | 6 | 1.000 | 6 | Genes in candidate G6339 (citG, b0613) -> triphosphoribosyl-dephospho-CoA synthase G6340 (citX, b0614) -> apo-citrate lyase phosphoribosyl-dephospho-CoA transferase G6341 (citF, b0615) -> citrate lyase, citrate-ACP transferase α subunit G6342 (citE, b0616) -> citrate lyase, citryl-ACP lyase β subunit G6343 (citD, b0617) -> citrate lyase, acyl carrier γ subunit G6344 (citC, b0618) -> citrate lyase synthetase |
| Group 194 | Candidate 0372 | 0.999 | 3 | 1.000 | 6 | Genes in candidate EG12634 (cas3, b2761) -> predicted fused HD nuclease and DEAD box helicase EG12845 (cas2, b2754) -> predicted endoribonuclease G7425 (cas1, b2755) -> predicted integrase G7426 (casE, b2756) -> crRNA endonuclease G7427 (casD, b2757) -> Cascade subunit D G7428 (casC, b2758) -> Cascade subunit C |
| Group 195 | Candidate 0388 | 0.999 | 0 | 0.000 | 6 | Genes in candidate EG11176 (garR, b3125) -> tartronate semialdehyde reductase EG11847 (yihU, b3882) -> succinate semialdehyde reductase G6277 (hyi, b0508) -> Hyi G6278 (glxR, b0509) -> tartronate semialdehyde reductase 2 G7417 (ygbJ, b2736) -> predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain G7420 (ygbM, b2739) -> conserved protein |
| Group 196 | Candidate 0489 | 0.999 | 6 | 1.000 | 6 | Genes in candidate EG10088 (asd, b3433) -> Asd EG10217 (accD, b2316) -> acetyl-CoA carboxyltransferase, β subunit EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB |
| Group 197 | Genes common to all candidates in group G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG10004 (dfp, b3639) -> Dfp | |||||
| Candidate 0509 | 0.999 | 0 | 0.833 | 6 | Additional genes in candidate G7008 (rsmF, b1835) -> 16S rRNA m5C1407 methyltransferase | |
| Candidate 0508 | 0.999 | 0 | 0.833 | 6 | Additional genes in candidate G7841 (rsgA, b4161) -> ribosome small subunit-dependent GTPase A |
| Group 198 | Candidate 0433 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG10441 (ihfB, b0912) -> integration host factor (IHF), β subunit EG10809 (pyrF, b1281) -> PyrF EG10900 (rpsA, b0911) -> 30S ribosomal subunit protein S1 EG11265 (cmk, b0910) -> cytidylate kinase EG12691 (yciM, b1280) -> conserved protein G6637 (yciS, b1279) -> conserved inner membrane protein |
| Group 199 | Candidate 0440 | 0.999 | 1 | 0.500 | 6 | Genes in candidate EG10391 (glpA, b2241) -> glycerol-3-phosphate dehydrogenase (anaerobic), large subunit EG10394 (glpD, b3426) -> GlpD EG10396 (glpF, b3927) -> GlpF EG10398 (glpK, b3926) -> GlpK EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator |
| Group 200 | Candidate 0450 | 0.999 | 0 | 0.167 | 6 | Genes in candidate EG10311 (fimD, b4317) -> outer membrane protein; export and assembly of type 1 fimbriae G6482 (ycbS, b0940) -> predicted outer membrane usher protein G7585 (yqiG, b3046) -> putative membrane protein G7638 (yraI, b3143) -> predicted pilin chaperone G7639 (yraJ, b3144) -> predicted outer membrane export usher protein G7670 (yhcD, b3216) -> predicted outer membrane protein |
| Group 201 | Candidate 0470 | 0.999 | 3 | 0.500 | 6 | Genes in candidate EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b G7410 (mltB, b2701) -> membrane-bound lytic murein transglycosylase B |
| Group 202 | Candidate 0451 | 0.999 | 0 | 0.000 | 6 | Genes in candidate EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG11973 (ecpD, b0140) -> probable pilin chaperone similar to PapD EG11989 (yehC, b2110) -> putative fimbrial chaperone G6386 (ybgP, b0717) -> putative fimbrial chaperone G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7586 (yqiH, b3047) -> putative membrane protein |
| Group 203 | Candidate 0396 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG10908 (rpsI, b3230) -> 30S ribosomal subunit protein S9 EG10977 (sspA, b3229) -> stringent starvation protein A EG10978 (sspB, b3228) -> SspB G7642 (yraM, b3147) -> putative glycosylase G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain |
| Group 204 | Candidate 0407 | 0.999 | 4 | 0.500 | 6 | Genes in candidate EG10677 (oppD, b1246) -> OppD EG10720 (phnK, b4097) -> PhnK EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6777 (ddpF, b1483) -> YddO G6778 (ddpD, b1484) -> YddP |
| Group 205 | Candidate 0369 | 0.999 | 1 | 0.167 | 6 | Genes in candidate G6169 (insF-1, b0299) -> IS3 element protein InsF G6223 (insF-2, b0372) -> IS3 element protein InsF G6297 (insF-3, b0541) -> IS3 element protein InsF G6533 (insF-4, b1026) -> IS3 element protein InsF G7126 (insF-5, b2089) -> IS3 element protein InsF G7906 (insO-2, b4285) -> KpLE2 phage-like element; partial transposase |
| Group 206 | Genes common to all candidates in group EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG10327 (folC, b2315) -> bifunctional folypolyglutamate synthetase / dihydrofolate synthetase EG10217 (accD, b2316) -> acetyl-CoA carboxyltransferase, β subunit | |||||
| Candidate 0491 | 0.999 | 5 | 1.000 | 6 | Additional genes in candidate EG10088 (asd, b3433) -> Asd EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG11059 (usg, b2319) -> predicted semialdehyde dehydrogenase | |
| Candidate 0490 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG10088 (asd, b3433) -> Asd EG11059 (usg, b2319) -> predicted semialdehyde dehydrogenase EG11577 (leuB, b0073) -> LeuB | |
| Candidate 0492 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10088 (asd, b3433) -> Asd EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |
| Candidate 0478 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10169 (cvpA, b2313) -> membrane protein required for colicin V production EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit |
| Group 207 | Candidate 0419 | 0.999 | 0 | 1.000 | 6 | Genes in candidate EG10547 (lrp, b0889) -> Lrp transcriptional dual regulator EG10947 (serS, b0893) -> seryl-tRNA synthetase EG11032 (trxB, b0888) -> thioredoxin reductase monomer EG12690 (rarA, b0892) -> recombination factor G6464 (ftsK, b0890) -> essential cell division protein FtsK G6465 (lolA, b0891) -> periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer |
| Group 208 | Candidate 0467 | 0.999 | 1 | 0.500 | 6 | Genes in candidate EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A G6845 (ynfE, b1587) -> oxidoreductase subunit G6846 (ynfF, b1588) -> oxidoreductase subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6848 (ynfH, b1590) -> oxidoreductase, predicted membrane anchor subunit G6849 (dmsD, b1591) -> DMS reductase maturation protein |
| Group 209 | Candidate 0404 | 0.999 | 5 | 0.000 | 6 | Genes in candidate EG10715 (phnF, b4102) -> PhnF transcriptional regulator EG11109 (mngR, b0730) -> MngR EG11711 (yidP, b3684) -> predicted DNA-binding transcriptional regulator EG11838 (yihL, b3872) -> YihL putative transcriptional regulator G7133 (yegW, b2101) -> predicted DNA-binding transcriptional regulator G7727 (frlR, b3375) -> predicted DNA-binding transcriptional regulator |
| Group 210 | Candidate 0502 | 0.999 | 7 | 0.167 | 6 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11258 (focA, b0904) -> FocA formate FNT transporter G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G7309 (focB, b2492) -> FocB formate FNT transporter G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 |
| Group 211 | Candidate 0377 | 0.999 | 0 | 0.833 | 6 | Genes in candidate EG12037 (yejA, b2177) -> YejA EG12038 (yejB, b2178) -> YejB EG12040 (yejE, b2179) -> YejE EG12041 (yejF, b2180) -> YejF EG12078 (nikD, b3479) -> NikD G6429 (gsiA, b0829) -> GsiA |
| Group 212 | Candidate 0426 | 0.999 | 8 | 0.833 | 6 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12095 (secG, b3175) -> SecG |
| Group 213 | Candidate 0503 | 0.999 | 0 | 0.667 | 6 | Genes in candidate EG10024 (aceE, b0114) -> subunit of E1p component of pyruvate dehydrogenase complex EG10025 (aceF, b0115) -> AceF-lipoate EG10042 (ampE, b0111) -> predicted inner membrane protein EG10543 (lpd, b0116) -> E3 monomer EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator G7546 (glcC, b2980) -> GlcC transcriptional dual regulator |
| Group 214 | Candidate 0444 | 0.999 | 1 | 1.000 | 6 | Genes in candidate EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase |
| Group 215 | Candidate 0366 | 0.999 | 0 | 0.000 | 6 | Genes in candidate G6387 (ybgQ, b0718) -> predicted outer membrane usher protein G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7208 (yfcT, b2337) -> fimbrial usher protein, C-terminal fragment G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment G7585 (yqiG, b3046) -> putative membrane protein G7586 (yqiH, b3047) -> putative membrane protein |
| Group 216 | Candidate 0427 | 0.999 | 10 | 0.000 | 6 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11552 (hydN, b2713) -> putative electron transport protein HydN EG12277 (ysaA, b3573) -> predicted hydrogenase, 4Fe-4S ferredoxin-type component G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein G7505 (ygfS, b2886) -> predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit |
| Group 217 | Candidate 0401 | 0.999 | 1 | 1.000 | 6 | Genes in candidate EG10767 (proA, b0243) -> ProA EG10768 (proB, b0242) -> ProB EG11255 (ybeB, b0637) -> predicted protein EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase G7656 (obgE, b3183) -> GTPase involved in chromosome partitioning and ribosome assembly |
| Group 218 | Genes common to all candidates in group G7454 (csdA, b2810) -> cysteine sulfinate desulfinase G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer | |||||
| Candidate 0519 | 1.000 | 1 | 0.800 | 5 | Additional genes in candidate G6905 (sufE, b1679) -> sulfur acceptor that activates SufS cysteine desulfurase | |
| Candidate 0365 | 1.000 | 8 | 0.833 | 6 | Additional genes in candidate G6712 (paaD, b1391) -> phenylacetate degradation protein G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex |
| Group 219 | Genes common to all candidates in group G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10667 (nusG, b3982) -> transcription termination factor NusG | |||||
| Candidate 0608 | 0.999 | 1 | 1.000 | 5 | Additional genes in candidate EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase | |
| Candidate 0408 | 1.000 | 9 | 1.000 | 6 | Additional genes in candidate EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 |
| Group 220 | Genes common to all candidates in group EG11666 (moaC, b0783) -> molybdopterin biosynthesis protein C EG11598 (moaE, b0785) -> molybdopterin synthase large subunit EG11596 (moaB, b0782) -> MoaB subunit EG11595 (moaA, bisA) -> molybdopterin biosynthesis protein A | |||||
| Candidate 0482 | 0.999 | 5 | 0.833 | 6 | Additional genes in candidate EG10153 (moeA, bisB) -> molybdopterin biosynthesis EG11511 (mog, bisD) -> predicted molybdochelatase | |
| Candidate 0547 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG11597 (moaD, b0784) -> MoaD-S |
| Group 221 | Genes common to all candidates in group G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer EG11786 (yfiF, b2581) -> predicted methyltransferase EG11259 (rnr, b4179) -> RNase R EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase | |||||
| Candidate 0568 | 1.000 | 0 | 0.600 | 5 | Additional genes in candidate EG11620 (rnb, b1286) -> ribonuclease II | |
| Candidate 0400 | 0.999 | 0 | 0.833 | 6 | Additional genes in candidate EG10790 (purA, b4177) -> PurA EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 |
| Group 222 | Genes common to all candidates in group G7678 (nanR, b3226) -> NanR DNA binding transcriptional dual regulator G7546 (glcC, b2980) -> GlcC transcriptional dual regulator EG11962 (lldR, b3604) -> LldR transcriptional repressor EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator | |||||
| Candidate 0561 | 0.999 | 0 | 0.400 | 5 | Additional genes in candidate G7789 (dgoR, b3695 (obsolete)) -> predicted DNA-binding transcriptional regulator | |
| Candidate 0390 | 1.000 | 0 | 0.167 | 6 | Additional genes in candidate EG12739 (exuR, b3094) -> ExuR transcriptional repressor EG20249 (uxuR, b4324) -> UxuR transcriptional repressor |
| Group 223 | Genes common to all candidates in group EG12113 (hofQ, b3391) -> protein involved in utilization of DNA as a carbon source EG10082 (aroL, b0388) -> shikimate kinase II EG10081 (aroK, b3390) -> shikimate kinase I EG10074 (aroB, b3389) -> 3-dehydroquinate synthase | |||||
| Candidate 0497 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit | |
| Candidate 0738 | 1.000 | 0 | 0.600 | 5 | Additional genes in candidate EG10748 (mrcA, b3396) -> peptidoglycan synthetase; penicillin-binding protein 1A |
| Group 224 | Genes common to all candidates in group G6489 (uup, b0949) -> ATP-binding protein with possible role in replication G6486 (ycbW, b0946) -> predicted protein EG50004 (rmf, b0953) -> ribosome modulation factor EG10807 (pyrD, b0945) -> dihydroorotate dehydrogenase | |||||
| Candidate 0459 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10273 (fabA, b0954) -> FabA G6488 (rlmL, b0948) -> 23S rRNA m2G2445 methyltransferase | |
| Candidate 0597 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10696 (pepN, b0932) -> aminopeptidase N |
| Group 225 | Genes common to all candidates in group EG12373 (ygdH, b2795) -> conserved protein EG11795 (gcvA, b2808) -> GcvA transcriptional dual regulator EG11794 (rlmM, b2806) -> 23S rRNA 2'-O-ribose C2498 methyltransferase EG11793 (ygdD, b2807) -> conserved inner membrane protein | |||||
| Candidate 0537 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate G6129 (perR, b0254) -> PerR transcriptional regulator | |
| Candidate 0381 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG12372 (ygdG, b2798) -> YgdG G7451 (syd, b2793) -> SecY-interacting protein |
| Group 226 | Genes common to all candidates in group G7530 (rdgB, b2954) -> RdgB G7527 (yggS, b2951) -> predicted enzyme G7526 (yggR, b2950) -> predicted transporter EG10419 (gshB, b2947) -> glutathione synthetase monomer | |||||
| Candidate 0645 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7531 (yggW, b2955) -> predicted oxidoreductase | |
| Candidate 0437 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate G7524 (yqgE, b2948) -> predicted protein G7525 (yqgF, b2949) -> predicted Holliday junction resolvase |
| Group 227 | Genes common to all candidates in group G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase EG11255 (ybeB, b0637) -> predicted protein EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG10767 (proA, b0243) -> ProA | |||||
| Candidate 0590 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10768 (proB, b0242) -> ProB | |
| Candidate 0424 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG10532 (leuS, b0642) -> leucyl-tRNA synthetase EG11412 (holA, b0640) -> DNA polymerase III, δ subunit |
| Group 228 | Genes common to all candidates in group G7233 (emrK, b2368) -> EmrK putative membrane fusion protein EG13283 (emrY, b2367) -> EmrY putative multidrug MFS transporter EG11439 (emrB, b2686) -> EmrB multidrug MFS transporter EG11354 (emrA, b2685) -> EmrA Membrane Fusion Protein | |||||
| Candidate 0385 | 0.999 | 0 | 0.000 | 6 | Additional genes in candidate EG11952 (sdsP, b4080) -> predicted outer membrane factor of efflux pump EG12020 (mdtQ, b2138) -> putative channel/filament protein | |
| Candidate 0618 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate EG10603 (mprA, b2684) -> MprA |
| Group 229 | Genes common to all candidates in group G369 (flgM, b1071) -> anti-sigma factor for FliA (sigma 28) G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G357 (flgA, b1072) -> flagellar biosynthesis; assembly of basal-body periplasmic P ring | |||||
| Candidate 0523 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G6562 (flgN, b1070) -> flagellar biosynthesis protein FlgN | |
| Candidate 0370 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G361 (flgE, b1076) -> flagellar hook protein FlgE |
| Group 230 | Genes common to all candidates in group EG10819 (rbsR, b3753) -> RbsR transcriptional repressor EG10818 (rbsK, b3752) -> ribokinase EG10525 (lacI, b0345) -> LacI transcriptional repressor EG10200 (cytR, b3934) -> CytR | |||||
| Candidate 0708 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type | |
| Candidate 0471 | 0.999 | 2 | 0.500 | 6 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase |
| Group 231 | Genes common to all candidates in group EG12438 (menH, b2263) -> (1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase EG12362 (menF, b2265) -> MenF EG11368 (menB, b2262) -> MenB EG10579 (menD, b2264) -> MenD | |||||
| Candidate 0686 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10261 (entC, b0593) -> isochorismate synthase 1 | |
| Candidate 0417 | 0.999 | 1 | 1.000 | 6 | Additional genes in candidate EG11532 (menC, b2261) -> o-succinylbenzoate synthase EG12437 (menE, b2260) -> MenE |
| Group 232 | Genes common to all candidates in group EG11440 (def, b3287) -> peptide deformylase EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10424 (gyrB, b3699) -> DNA gyrase, subunit B | |||||
| Candidate 0643 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase | |
| Candidate 0436 | 0.999 | 8 | 1.000 | 6 | Additional genes in candidate EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG11197 (yidC, b3705) -> inner-membrane protein insertion factor |
| Group 233 | Genes common to all candidates in group G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex EG11043 (tyrS, b1637) -> tyrosyl-tRNA synthetase | |||||
| Candidate 0563 | 0.999 | 2 | 1.000 | 5 | Additional genes in candidate G6880 (anmK, b1640) -> anhydro-N-acetylmuramic acid kinase | |
| Candidate 0392 | 0.999 | 8 | 1.000 | 6 | Additional genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer |
| Group 234 | Genes common to all candidates in group G7808 (tatB, b3838) -> TatB G7806 (tatA, b3836) -> TatA EG11479 (tatC, b3839) -> TatC EG11474 (yigP, b3834) -> conserved protein | |||||
| Candidate 0383 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11473 (ubiE, b3833) -> bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase EG11476 (ubiB, b3835) -> 2-octaprenylphenol hydroxylase | |
| Candidate 0552 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11481 (tatD, b3841 (obsolete)) -> Tat-linked protein quality control |
| Group 235 | Genes common to all candidates in group EG11149 (gcvR, b2479) -> GcvR predicted transcriptional regulator EG10658 (bamC, bamC) -> BamC EG10205 (dapA, b2478) -> DapA EG10108 (bcp, bcp) -> thiol peroxidase | |||||
| Candidate 0486 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate G7310 (yfgO, b2493) -> predicted inner membrane protein G7311 (yfgC, b2494) -> predicted peptidase | |
| Candidate 0726 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10791 (purC, b2476) -> PurC |
| Group 236 | Genes common to all candidates in group EG12313 (yacF, b0102) -> conserved protein EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator EG10042 (ampE, b0111) -> predicted inner membrane protein EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase | |||||
| Candidate 0752 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G7546 (glcC, b2980) -> GlcC transcriptional dual regulator | |
| Candidate 0501 | 0.999 | 0 | 1.000 | 6 | Additional genes in candidate EG11546 (nadC, b0109) -> quinolinate phosphoribosyltransferase (decarboxylating) monomer EG12107 (ppdD, b0108) -> prepilin peptidase dependent protein |
| Group 237 | Genes common to all candidates in group EG10368 (epd, b2927) -> Epd EG10703 (pgk, b2926) -> phosphoglycerate kinase EG11427 (tktA, b2935) -> TktA EG12100 (tktB, b2465) -> TktB | |||||
| Candidate 0679 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer | |
| Candidate 0658 | 1.000 | 2 | 0.600 | 5 | Additional genes in candidate EG10367 (gapA, b1779) -> glyceraldehyde 3-phosphate dehydrogenase-A monomer | |
| Candidate 0442 | 0.999 | 0 | 0.667 | 6 | Additional genes in candidate EG10589 (metK, b2942) -> methionine adenosyltransferase EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer |
| Group 238 | Genes common to all candidates in group G7705 (gspF, b3327) -> putative protein secretion protein for export G7539 (pppA, b2972) -> prepilin peptidase EG12106 (hofB, b0107) -> protein involved in plasmid replication EG11798 (hofC, b0106) -> protein transport protein HofC | |||||
| Candidate 0536 | 1.000 | 0 | 0.800 | 5 | Additional genes in candidate G7704 (gspE, b3326) -> putative protein secretion protein for export | |
| Candidate 0555 | 1.000 | 0 | 0.600 | 5 | Additional genes in candidate EG11359 (gspO, b3335) -> leader peptidase, integral membrane protein |
| Group 239 | Candidate 0583 | 1.000 | 4 | 1.000 | 5 | Genes in candidate EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase EG10938 (secD, b0408) -> SecD EG10940 (secF, b0409) -> SecF EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer EG11096 (yajC, b0407) -> YajC |
| Group 240 | Candidate 0617 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10608 (mreB, b3251) -> MreB EG10609 (mreC, b3250) -> MreC EG10610 (mreD, b3249) -> MreD |
| Group 241 | Candidate 0718 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10131 (cadA, b4131) -> CadA EG10961 (speC, b2965) -> SpeC EG10964 (speF, b0693) -> SpeF EG11501 (adiA, b4117) -> Adi G6094 (ldcC, b0186) -> LdcC |
| Group 242 | Candidate 0756 | 1.000 | 1 | 0.200 | 5 | Genes in candidate EG10027 (ackA, b2296) -> propionate kinase / acetate kinase EG11172 (tdcD, b3115) -> propionate kinase EG20173 (pta, b2297) -> Pta G7189 (yfbV, b2295) -> conserved inner membrane protein G7288 (eutD, b2458) -> predicted phosphotransacetylase subunit |
| Group 243 | Genes common to all candidates in group G7706 (gspG, b3328) -> putative protein secretion protein for export G7705 (gspF, b3327) -> putative protein secretion protein for export G7704 (gspE, b3326) -> putative protein secretion protein for export EG12106 (hofB, b0107) -> protein involved in plasmid replication | |||||
| Candidate 0535 | 1.000 | 0 | 0.800 | 5 | Additional genes in candidate EG11798 (hofC, b0106) -> protein transport protein HofC | |
| Candidate 0531 | 1.000 | 0 | 0.800 | 5 | Additional genes in candidate G7703 (gspD, b3325) -> putative protein secretion protein for export |
| Group 244 | Genes common to all candidates in group EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase | |||||
| Candidate 0744 | 1.000 | 1 | 0.200 | 5 | Additional genes in candidate EG10052 (araA, b0062) -> L-arabinose isomerase monomer EG10348 (fucA, b2800) -> FucA | |
| Candidate 0743 | 1.000 | 11 | 0.000 | 5 | Additional genes in candidate EG10348 (fucA, b2800) -> FucA G7419 (ygbL, b2738) -> predicted class II aldolase | |
| Candidate 0745 | 1.000 | 0 | 0.400 | 5 | Additional genes in candidate EG10052 (araA, b0062) -> L-arabinose isomerase monomer EG10053 (araB, b0063) -> L-ribulokinase monomer |
| Group 245 | Candidate 0711 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10178 (cyoA, b0432) -> cytochrome bo terminal oxidase subunit II EG10179 (cyoB, b0431) -> cytochrome bo terminal oxidase subunit I EG10180 (cyoC, b0430) -> cytochrome bo terminal oxidase subunit III EG10181 (cyoD, b0429) -> cytochrome bo terminal oxidase subunit IV EG10182 (cyoE, b0428) -> heme O synthase |
| Group 246 | Candidate 0600 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10690 (pcnB, b0143) -> poly(A) polymerase I EG11374 (folK, b0142) -> 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase EG11675 (panB, b0134) -> 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer EG11746 (panC, b0133) -> pantothenate synthetase monomer EG11747 (panD, b0131) -> PanD β cleavage product |
| Group 247 | Candidate 0685 | 1.000 | 6 | 0.600 | 5 | Genes in candidate EG10261 (entC, b0593) -> isochorismate synthase 1 EG10682 (pabA, b3360) -> PabA EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I EG12362 (menF, b2265) -> MenF |
| Group 248 | Candidate 0740 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10066 (argD, b3359) -> ArgD EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI G6944 (astC, b1748) -> AstC G7489 (ygeW, b2870) -> putative carbamoyltransferase |
| Group 249 | Candidate 0599 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10694 (pepA, b4260) -> aminopeptidase A/I EG11067 (valS, b4258) -> valyl-tRNA synthetase EG11413 (holC, b4259) -> DNA polymerase III, χ subunit G7888 (lptF, b4261) -> LptF G7889 (lptG, b4262) -> LptG |
| Group 250 | Candidate 0629 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10513 (kdpA, b0698) -> KdpA EG10514 (kdpB, b0697) -> KdpB EG10515 (kdpC, b0696) -> KdpC EG10516 (kdpD, b0695) -> KdpD sensory histidine kinase - phosphorylated EG10517 (kdpE, b0694) -> KdpE-Phosphorylated |
| Group 251 | Candidate 0714 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10165 (crr, b2417) -> Crr EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component |
| Group 252 | Candidate 0546 | 1.000 | 9 | 0.000 | 5 | Genes in candidate EG11613 (eptA, b4114) -> predicted metal-dependent hydrolase EG11914 (yijP, b3955) -> conserved inner membrane protein EG12267 (eptB, b3546) -> phosphoethanolamine transferase G6418 (ybiP, b0815) -> predicted hydrolase, inner membrane G7655 (yhbX, b3173) -> predicted hydrolase, inner membrane |
| Group 253 | Candidate 0705 | 1.000 | 12 | 0.400 | 5 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG10206 (dapB, b0031) -> DapB EG10637 (nanA, b3225) -> NanA G6140 (yagE, b0268) -> CP4-6 prophage; predicted lyase/synthase G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 254 | Candidate 0524 | 1.000 | 3 | 1.000 | 5 | Genes in candidate EG12799 (mlaD, b3193) -> MlaD EG12800 (mlaE, b3194) -> MlaE EG12801 (mlaF, b3195) -> MlaF G7216 (mlaA, b2346) -> MlaA G7659 (mlaC, b3192) -> MlaC |
| Group 255 | Candidate 0728 | 1.000 | 1 | 1.000 | 5 | Genes in candidate EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10763 (priA, b3935) -> primosome factor N' |
| Group 256 | Candidate 0588 | 1.000 | 0 | 1.000 | 5 | Genes in candidate EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG10885 (rplY, b2185) -> 50S ribosomal subunit protein L25 EG11198 (glmU, b3730) -> GlmU EG11294 (ispE, b1208) -> IspE |
| Group 257 | Candidate 0691 | 1.000 | 7 | 0.800 | 5 | Genes in candidate EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription |
| Group 258 | Genes common to all candidates in group EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB | |||||
| Candidate 0557 | 1.000 | 1 | 0.800 | 5 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G6401 (ybhJ, b0771) -> predicted hydratase | |
| Candidate 0549 | 0.999 | 1 | 0.800 | 5 | Additional genes in candidate EG12316 (acnB, b0118) -> bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase G6401 (ybhJ, b0771) -> predicted hydratase | |
| Candidate 0558 | 1.000 | 1 | 1.000 | 5 | Additional genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase G6205 (mhpE, b0352) -> 4-hydroxy-2-ketovalerate aldolase |
| Group 259 | Genes common to all candidates in group G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10074 (aroB, b3389) -> 3-dehydroquinate synthase | |||||
| Candidate 0737 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10081 (aroK, b3390) -> shikimate kinase I | |
| Candidate 0735 | 1.000 | 0 | 0.400 | 5 | Additional genes in candidate EG10404 (gltD, b3213) -> glutamate synthase, small subunit |
| Group 260 | Genes common to all candidates in group EG12766 (agaA, b3135) -> predicted truncated N-acetylgalactosamine-6-phosphate deacetylase EG11728 (yieK, b3718) -> predicted 6-phosphogluconolactonase EG10633 (nagB, b0678) -> NagB EG10632 (nagA, b0677) -> NagA | |||||
| Candidate 0612 | 0.999 | 6 | 0.400 | 5 | Additional genes in candidate EG10635 (nagE, b0679) -> NagE | |
| Candidate 0611 | 1.000 | 6 | 0.200 | 5 | Additional genes in candidate G7636 (agaI, b3141) -> predicted galactosamine-6-phosphate isomerase |
| Group 261 | Genes common to all candidates in group EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase EG10276 (accC, b3256) -> AccC EG10275 (accB, b3255) -> biotinylated biotin-carboxyl carrier protein | |||||
| Candidate 0683 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG10317 (fis, b3261) -> Fis | |
| Candidate 0682 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7693 (yhdT, b3257) -> conserved inner membrane protein |
| Group 262 | Genes common to all candidates in group EG10194 (cysN, b2751) -> CysN EG10190 (cysI, b2763) -> sulfite reductase, hemoprotein subunit EG10189 (cysH, b2762) -> CysH EG10186 (cysD, b2752) -> CysD | |||||
| Candidate 0710 | 1.000 | 0 | 0.600 | 5 | Additional genes in candidate EG10185 (cysC, b2750) -> CysC | |
| Candidate 0709 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10191 (cysJ, b2764) -> sulfite reductase, flavoprotein subunit |
| Group 263 | Genes common to all candidates in group EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11079 (ribF, b0025) -> bifunctional riboflavin kinase / FMN adenylyltransferase EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 | |||||
| Candidate 0630 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG10505 (infB, b3168) -> protein chain initiation factor IF-2 | |
| Candidate 0587 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10786 (ptrA, b2821) -> protease III |
| Group 264 | Genes common to all candidates in group EG10222 (deoD, b4384) -> DeoD EG10221 (deoC, b4381) -> deoxyribose-phosphate aldolase EG10220 (deoB, b4383) -> phosphopentomutase EG10219 (deoA, b4382) -> DeoA | |||||
| Candidate 0698 | 0.999 | 6 | 1.000 | 5 | Additional genes in candidate EG10951 (ytjB, b4387) -> membrane protein | |
| Candidate 0697 | 1.000 | 7 | 0.600 | 5 | Additional genes in candidate G7732 (yhfW, b3380) -> predicted mutase |
| Group 265 | Genes common to all candidates in group EG11153 (rimM, b2608) -> ribosome maturation protein EG11023 (trmD, b2607) -> TrmD EG10880 (rplS, b2606) -> 50S ribosomal subunit protein L19 EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) | |||||
| Candidate 0677 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids | |
| Candidate 0676 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7643 (yraN, b3148) -> conserved protein |
| Group 266 | Genes common to all candidates in group EG50001 (rplU, b3186) -> 50S ribosomal subunit protein L21 EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 G7656 (obgE, b3183) -> GTPase involved in chromosome partitioning and ribosome assembly | |||||
| Candidate 0758 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG10017 (ispB, b3187) -> IspB EG10768 (proB, b0242) -> ProB | |
| Candidate 0589 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10768 (proB, b0242) -> ProB G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase | |
| Candidate 0571 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase |
| Group 267 | Genes common to all candidates in group EG10007 (hisM, b2307) -> HisM EG10452 (hisP, b2306) -> HisP EG12125 (hisQ, b2308) -> HisQ | |||||
| Candidate 0762 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10072 (argT, b2310) -> ArgT EG11626 (artQ, b0862) -> ArtQ | |
| Candidate 0760 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG11624 (artP, b0864) -> ArtP EG11626 (artQ, b0862) -> ArtQ | |
| Candidate 0761 | 1.000 | 0 | 0.600 | 5 | Additional genes in candidate EG10072 (argT, b2310) -> ArgT EG12124 (hisJ, b2309) -> HisJ |
| Group 268 | Genes common to all candidates in group EG10350 (fucK, b2803) -> L-fuculokinase EG11075 (xylB, b3564) -> xylulokinase EG12284 (lyxK, b3580) -> L-xylulose kinase G7442 (ygcE, b2776) -> predicted kinase | |||||
| Candidate 0661 | 0.999 | 1 | 0.400 | 5 | Additional genes in candidate EG11868 (rhaB, b3904) -> L-rhamnulose kinase | |
| Candidate 0660 | 1.000 | 1 | 0.200 | 5 | Additional genes in candidate G6798 (lsrK, b1511) -> autoinducer-2 kinase | |
| Candidate 0662 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG11074 (xylA, b3565) -> XylA |
| Group 269 | Genes common to all candidates in group G7626 (tdcF, b3113) -> predicted L-PSP (mRNA) endoribonuclease G7877 (yjgF, b4243) -> conserved protein G7879 (yjgH, b4248) -> predicted mRNA endoribonuclease | |||||
| Candidate 0574 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit G6521 (rutC, b1010) -> predicted aminoacrylate peracid reductase | |
| Candidate 0521 | 1.000 | 5 | 0.000 | 5 | Additional genes in candidate G6521 (rutC, b1010) -> predicted aminoacrylate peracid reductase G6993 (yoaB, b1809) -> conserved protein | |
| Candidate 0575 | 0.999 | 0 | 0.400 | 5 | Additional genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] |
| Group 270 | Genes common to all candidates in group EG11192 (yicC, b3644) -> conserved protein EG10965 (gmk, b3648) -> Gmk EG10829 (recG, b3652) -> RecG DNA helicase | |||||
| Candidate 0585 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10808 (pyrE, b3642) -> PyrE EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit | |
| Candidate 0580 | 1.000 | 0 | 1.000 | 5 | Additional genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] | |
| Candidate 0767 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10004 (dfp, b3639) -> Dfp EG10808 (pyrE, b3642) -> PyrE | |
| Candidate 0765 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10004 (dfp, b3639) -> Dfp EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] |
| Group 271 | Candidate 0699 | 0.999 | 2 | 0.200 | 5 | Genes in candidate EG10216 (dedA, b2317) -> conserved inner membrane protein EG11571 (yabI, b0065) -> conserved inner membrane protein EG11824 (yghB, b3009) -> conserved inner membrane protein EG12017 (yohD, b2136) -> conserved inner membrane protein G7609 (yqjA, b3095) -> conserved inner membrane protein |
| Group 272 | Genes common to all candidates in group EG11481 (tatD, b3841 (obsolete)) -> Tat-linked protein quality control EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase G7952 (yjjV, b4378) -> predicted DNase | |||||
| Candidate 0626 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10523 (rsmA, b0051) -> 16S rRNA m62A1518,m62A1519 dimethyltransferase G7597 (ygjH, b3074) -> putative tRNA synthetase | |
| Candidate 0619 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10586 (metG, b2114) -> methionyl-tRNA synthetase G7597 (ygjH, b3074) -> putative tRNA synthetase | |
| Candidate 0627 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10523 (rsmA, b0051) -> 16S rRNA m62A1518,m62A1519 dimethyltransferase EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase |
| Group 273 | Genes common to all candidates in group G7039 (fliY, b1920) -> periplasmic cystine-binding protein; member of extracellular bacterial solute-binding protein family III G7037 (yecS, b1918) -> predicted transporter subunit: membrane component of ABC superfamily EG11626 (artQ, b0862) -> ArtQ EG11624 (artP, b0864) -> ArtP | |||||
| Candidate 0543 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG11627 (artM, b0861) -> ArtM | |
| Candidate 0542 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily |
| Group 274 | Candidate 0694 | 0.999 | 4 | 0.000 | 5 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit G6902 (ydhY, b1674) -> predicted 4Fe-4S ferredoxin-type protein |
| Group 275 | Genes common to all candidates in group EG10204 (dam, b3387) -> DNA adenine methylase EG11030 (trpS, b3384) -> tryptophanyl-tRNA synthetase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |||||
| Candidate 0707 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11183 (damX, b3388) -> cell division protein DamX EG11871 (gph, b3385) -> phosphoglycolate phosphatase | |
| Candidate 0736 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10074 (aroB, b3389) -> 3-dehydroquinate synthase EG11183 (damX, b3388) -> cell division protein DamX | |
| Candidate 0706 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG11871 (gph, b3385) -> phosphoglycolate phosphatase EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase |
| Group 276 | Genes common to all candidates in group G7531 (yggW, b2955) -> predicted oxidoreductase G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein | |||||
| Candidate 0689 | 0.999 | 7 | 1.000 | 5 | Additional genes in candidate EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |
| Candidate 0690 | 0.999 | 7 | 1.000 | 5 | Additional genes in candidate EG10529 (lepA, b2569) -> elongation factor 4 |
| Group 277 | Candidate 0734 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10075 (aroC, b2329) -> AroC EG12449 (prmB, b2330) -> N5-glutamine methyltransferase G7200 (yfcL, b2325) -> predicted protein G7202 (yfcN, b2331) -> conserved protein G7211 (sixA, b2340) -> phosphohistidine phosphatase |
| Group 278 | Genes common to all candidates in group G6233 (proY, b0402) -> ProY cryptic proline APC transporter EG12504 (cycA, b4208) -> CycA serine/alanine/glycine APC transporter EG10708 (pheP, b0576) -> PheP phenylalanine APC transporter EG10084 (aroP, b0112) -> AroP phenylalanine/tyrosine/tryptophan APC transporter | |||||
| Candidate 0733 | 0.999 | 0 | 0.000 | 5 | Additional genes in candidate EG11459 (yifK, b3795) -> YifK APC transporter | |
| Candidate 0732 | 0.999 | 0 | 0.000 | 5 | Additional genes in candidate G6764 (ansP, b1453) -> AnsP L-asparagine APC Transporter |
| Group 279 | Genes common to all candidates in group G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator EG12799 (mlaD, b3193) -> MlaD EG11358 (murA, b3189) -> UDP-N-acetylglucosamine enolpyruvoyl transferase EG10447 (hisD, b2020) -> HisD | |||||
| Candidate 0637 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10449 (hisG, b2019) -> HisG | |
| Candidate 0636 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7659 (mlaC, b3192) -> MlaC |
| Group 280 | Genes common to all candidates in group G6377 (ybfL, b0705) -> predicted transposase; receptor protein EG11526 (ydcC, b1460) -> conserved protein EG11525 (yhhI, b3484) -> predicted transposase EG11524 (ybfD, b0706) -> putative DNA ligase | |||||
| Candidate 0551 | 0.999 | 0 | 0.000 | 5 | Additional genes in candidate G6767 (yncI, b1458) -> predicted protein | |
| Candidate 0550 | 0.999 | 0 | 0.000 | 5 | Additional genes in candidate G6768 (yncM, b1459) -> predicted protein |
| Group 281 | Candidate 0723 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10123 (birA, birA) -> bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor EG10922 (coaA, b3974) -> pantothenate kinase monomer EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 282 | Genes common to all candidates in group EG11485 (hemG, b3850) -> HemG EG11484 (yigZ, b3848) -> predicted elongation factor EG11021 (trkH, b3849) -> TrkH potassium ion Trk Transporter EG10278 (fadA, b3845) -> 3-ketoacyl-CoA thiolase | |||||
| Candidate 0681 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10279 (fadB, b3846) -> dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase | |
| Candidate 0680 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10698 (pepQ, b3847) -> proline dipeptidase |
| Group 283 | Candidate 0586 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10791 (purC, b2476) -> PurC EG10792 (purD, b4005) -> phosphoribosylamine-glycine ligase EG10795 (purH, b4006) -> AICAR transformylase / IMP cyclohydrolase EG10798 (purM, b2499) -> PurM EG10799 (purN, b2500) -> phosphoribosylglycinamide formyltransferase 1 |
| Group 284 | Candidate 0657 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10367 (gapA, b1779) -> glyceraldehyde 3-phosphate dehydrogenase-A monomer EG10368 (epd, b2927) -> Epd EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase G6402 (ybhK, b0780) -> predicted transferase with NAD(P)-binding Rossmann-fold domain |
| Group 285 | Candidate 0652 | 0.999 | 1 | 0.200 | 5 | Genes in candidate EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG10387 (glnL, b3869) -> NtrB EG10482 (zraR, b4004) -> ZraR-Phosphorylated transcriptional activator EG11285 (glrR, b2554) -> GlrR phosphorylated transcriptional activator EG11668 (atoC, b2220) -> AtoC-phosphorylated transcriptional activator |
| Group 286 | Candidate 0640 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10426 (helD, b0962) -> DNA helicase IV EG10534 (ligA, b2411) -> DNA ligase EG10837 (rep, b3778) -> rep EG11064 (uvrD, b3813) -> DNA-dependent ATPase I and helicase II EG11334 (ligB, b3647) -> DNA ligase |
| Group 287 | Candidate 0538 | 0.999 | 7 | 0.400 | 5 | Genes in candidate EG11791 (cmtB, b2934) -> CmtB EG12494 (ulaB, b4194) -> UlaB EG12495 (ulaC, b4195) -> UlaC EG12554 (sgcA, b4302) -> SgcA G7856 (ulaA, b4193) -> UlaA |
| Group 288 | Genes common to all candidates in group G6575 (lolE, b1118) -> LolE G6573 (lolC, b1116) -> LolC G6568 (ycfP, b1108) -> conserved protein EG11619 (mfd, b1114) -> transcription-repair coupling factor | |||||
| Candidate 0545 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G6567 (nagZ, b1107) -> β-N-acetylhexosaminidase | |
| Candidate 0544 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G6574 (lolD, b1117) -> LolD |
| Group 289 | Genes common to all candidates in group EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] | |||||
| Candidate 0731 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase EG11852 (dtd, b3887) -> D-Tyr-tRNATyr deacylase | |
| Candidate 0730 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase G6475 (ycbL, b0927) -> predicted metal-binding enzyme | |
| Candidate 0749 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10051 (apt, b0469) -> Apt G6475 (ycbL, b0927) -> predicted metal-binding enzyme |
| Group 290 | Genes common to all candidates in group G7037 (yecS, b1918) -> predicted transporter subunit: membrane component of ABC superfamily EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily EG11626 (artQ, b0862) -> ArtQ EG10388 (glnP, b0810) -> GlnP | |||||
| Candidate 0648 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G7039 (fliY, b1920) -> periplasmic cystine-binding protein; member of extracellular bacterial solute-binding protein family III | |
| Candidate 0650 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10386 (glnH, b0811) -> GlnH |
| Group 291 | Candidate 0601 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11247 (rlmD, b2785) -> 23S rRNA m5U1939 methyltransferase EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator |
| Group 292 | Candidate 0717 | 0.999 | 5 | 1.000 | 5 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10206 (dapB, b0031) -> DapB EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins |
| Group 293 | Genes common to all candidates in group G7420 (ygbM, b2739) -> conserved protein G7419 (ygbL, b2738) -> predicted class II aldolase G7418 (ygbK, b2737) -> conserved protein G7417 (ygbJ, b2736) -> predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain | |||||
| Candidate 0522 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G6277 (hyi, b0508) -> Hyi | |
| Candidate 0663 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10348 (fucA, b2800) -> FucA |
| Group 294 | Candidate 0605 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10675 (oppB, b1244) -> OppB EG10677 (oppD, b1246) -> OppD EG10678 (oppF, b1247) -> OppF EG12079 (nikE, b3480) -> NikE G6778 (ddpD, b1484) -> YddP |
| Group 295 | Genes common to all candidates in group G6635 (yciO, b1267) -> conserved protein EG12424 (prmC, b1212) -> protein-(glutamine-N5) methyltransferase EG10994 (tdk, b1238) -> thymidine kinase / deoxyuridine kinase EG10761 (prfA, b1211) -> peptide chain release factor RF1 | |||||
| Candidate 0593 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG12449 (prmB, b2330) -> N5-glutamine methyltransferase | |
| Candidate 0592 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 296 | Genes common to all candidates in group G7023 (torY, b1873) -> trimethylamine N-oxide reductase III, c-type cytochrome subunit G7022 (torZ, bisZ) -> trimethylamine N-oxide reductase III, TorZ subunit EG11814 (torA, b0997) -> trimethylamine N-oxide reductase, catalytic subunit EG10124 (bisC, bisC) -> biotin sulfoxide reductase | |||||
| Candidate 0722 | 0.999 | 0 | 0.000 | 5 | Additional genes in candidate EG11815 (torC, b0996) -> TorC trimethylamine N-oxide reductase, cytochrome c-type subunit | |
| Candidate 0721 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate G6846 (ynfF, b1588) -> oxidoreductase subunit |
| Group 297 | Candidate 0649 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG10386 (glnH, b0811) -> GlnH EG11625 (artI, b0863) -> ArtI EG11626 (artQ, b0862) -> ArtQ EG11627 (artM, b0861) -> ArtM EG11628 (artJ, b0860) -> ArtJ |
| Group 298 | Genes common to all candidates in group G7744 (hslO, b3401) -> molecular chaperone Hsp33 G7743 (hslR, b3400) -> heat shock protein Hsp15 involved in ribosome recycling G7742 (yrfG, b3399) -> purine nucleotidase G7740 (nudE, b3397) -> NudE | |||||
| Candidate 0602 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10688 (pck, b3403) -> phosphoenolpyruvate carboxykinase (ATP) | |
| Candidate 0514 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7741 (yrfF, b3398) -> putative dehydrogenase |
| Group 299 | Genes common to all candidates in group EG11192 (yicC, b3644) -> conserved protein EG10965 (gmk, b3648) -> Gmk EG10863 (rph, b3643) -> RNase PH monomer EG10808 (pyrE, b3642) -> PyrE | |||||
| Candidate 0584 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit | |
| Candidate 0766 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10004 (dfp, b3639) -> Dfp |
| Group 300 | Candidate 0712 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10170 (cyaA, b3806) -> adenylate cyclase EG10434 (hemY, b3802) -> predicted protoheme IX synthesis protein EG10837 (rep, b3778) -> rep EG11201 (yigA, b3810) -> conserved protein EG11653 (cyaY, b3807) -> frataxin, iron-binding and oxidizing protein |
| Group 301 | Candidate 0562 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11046 (ugpA, b3452) -> UgpA EG11047 (ugpB, b3453) -> UgpB EG11048 (ugpC, b3450) -> UgpC EG11049 (ugpE, b3451) -> UgpE EG11050 (ugpQ, b3449) -> glycerophosphodiester phosphodiesterase, cytosolic |
| Group 302 | Candidate 0638 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10435 (hflC, b4175) -> regulator of FtsH protease EG10436 (hflK, b4174) -> regulator of FtsH protease EG10790 (purA, b4177) -> PurA EG11259 (rnr, b4179) -> RNase R G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer |
| Group 303 | Genes common to all candidates in group EG10493 (ilvA, b3772) -> IlvA EG10496 (ilvD, b3771) -> IlvD EG10501 (ilvM, b3769) -> IlvM | |||||
| Candidate 0633 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10494 (ilvB, b3671) -> IlvB EG10495 (ilvC, b3774) -> IlvC | |
| Candidate 0631 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG10503 (ilvY, b3773) -> IlvY DNA binding transcriptional dual regulator | |
| Candidate 0632 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10494 (ilvB, b3671) -> IlvB EG10497 (ilvE, b3770) -> IlvE |
| Group 304 | Genes common to all candidates in group EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG10359 (fur, b0683) -> Fur EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein | |||||
| Candidate 0704 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10206 (dapB, b0031) -> DapB | |
| Candidate 0692 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10831 (recN, b2616) -> protein used in recombination and DNA repair |
| Group 305 | Candidate 0684 | 0.999 | 4 | 1.000 | 5 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10831 (recN, b2616) -> protein used in recombination and DNA repair G7352 (bamD, bamD) -> BamD |
| Group 306 | Genes common to all candidates in group EG12099 (efp, b4147) -> protein chain elongation factor EF-P EG11098 (xseB, b0422) -> exonuclease VII, small subunit EG11072 (xseA, b2509) -> exonuclease VII, large subunit EG10666 (nusB, b0416) -> transcription antitermination protein NusB | |||||
| Candidate 0609 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7248 (ypdF, b2385) -> aminopeptidase | |
| Candidate 0739 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10070 (argR, b3237) -> ArgR |
| Group 307 | Candidate 0560 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11122 (yciB, b1254) -> predicted inner membrane protein EG11607 (yciI, b1251) -> predicted enzyme EG12433 (rluB, b1269) -> 23S rRNA pseudouridine 2605 synthase G6634 (yciV, b1266) -> conserved protein G6635 (yciO, b1267) -> conserved protein |
| Group 308 | Genes common to all candidates in group G7409 (ygaD, b2700) -> conserved protein EG12080 (recX, b2698) -> inhibitor of RecA EG10823 (recA, b2699) -> DNA strand exchange and recombination protein with protease and nuclease activity EG10034 (alaS, b2697) -> alanyl-tRNA synthetase | |||||
| Candidate 0755 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11447 (csrA, b2696) -> carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism | |
| Candidate 0754 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG11645 (ydeJ, b1537) -> conserved protein |
| Group 309 | Genes common to all candidates in group G6848 (ynfH, b1590) -> oxidoreductase, predicted membrane anchor subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A | |||||
| Candidate 0696 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate EG10234 (dmsC, b0896) -> dimethyl sulfoxide reductase, chain C | |
| Candidate 0695 | 0.999 | 0 | 0.200 | 5 | Additional genes in candidate G6846 (ynfF, b1588) -> oxidoreductase subunit |
| Group 310 | Candidate 0604 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10682 (pabA, b3360) -> PabA EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I M004 (rpe, b3386) -> ribulose phosphate 3-epimerase |
| Group 311 | Genes common to all candidates in group EG10558 (malK, b4035) -> MalK EG10556 (malG, b4032) -> MalG EG10555 (malF, b4033) -> MalF EG10554 (malE, b4034) -> MalE | |||||
| Candidate 0625 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10528 (lamB, b4036) -> LamB | |
| Candidate 0623 | 0.999 | 1 | 0.800 | 5 | Additional genes in candidate G6656 (ycjV, b1318) -> predicted sugar transporter subunit: ATP-binding component of ABC superfamily |
| Group 312 | Candidate 0688 | 0.999 | 2 | 1.000 | 5 | Genes in candidate EG10258 (eno, b2779) -> Eno EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG11259 (rnr, b4179) -> RNase R EG11782 (smpB, b2620) -> small protein B EG12296 (gpmM, b3612) -> phosphoglycerate mutase, cofactor independent |
| Group 313 | Candidate 0674 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G7585 (yqiG, b3046) -> putative membrane protein |
| Group 314 | Candidate 0529 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG12406 (ybiH, b0796) -> predicted DNA-binding transcriptional regulator G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 315 | Candidate 0719 | 0.999 | 0 | 0.000 | 5 | Genes in candidate EG10131 (cadA, b4131) -> CadA EG10132 (cadB, b4132) -> CadB cadaverine/lysine APC exchanger EG11501 (adiA, b4117) -> Adi EG12462 (adiC, b4115) -> AdiC G6094 (ldcC, b0186) -> LdcC |
| Group 316 | Genes common to all candidates in group EG12095 (secG, b3175) -> SecG EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 | |||||
| Candidate 0572 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11553 (glmM, b3176) -> phosphoglucosamine mutase | |
| Candidate 0595 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer |
| Group 317 | Genes common to all candidates in group EG11192 (yicC, b3644) -> conserved protein EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] EG10863 (rph, b3643) -> RNase PH monomer EG10004 (dfp, b3639) -> Dfp | |||||
| Candidate 0764 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10965 (gmk, b3648) -> Gmk | |
| Candidate 0763 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11312 (yicR, b3638) -> hypothetical protein |
| Group 318 | Genes common to all candidates in group G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG10425 (hdhA, b1619) -> HdhA | |||||
| Candidate 0642 | 0.999 | 1 | 1.000 | 5 | Additional genes in candidate EG10971 (srlD, b2705) -> SrlD | |
| Candidate 0641 | 0.999 | 0 | 0.400 | 5 | Additional genes in candidate G7892 (idnO, b4266) -> 5-keto-D-gluconate 5-reductase |
| Group 319 | Candidate 0578 | 0.999 | 1 | 0.200 | 5 | Genes in candidate EG10859 (rne, b1084) -> RNase E EG11299 (rng, b3247) -> ribonuclease G (RNAse G) monomer EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase |
| Group 320 | Candidate 0567 | 0.999 | 2 | 0.000 | 5 | Genes in candidate EG10991 (tdcC, b3116) -> TdcC threonine STP transporter EG12142 (sdaC, b2796) -> SdaC serine STP transporter EG12266 (yhjV, b3539) -> YhjV STP transporter EG12754 (yhaO, b3110) -> YhaO STP transporter G7465 (yqeG, b2845) -> YqeG STP transporter |
| Group 321 | Candidate 0715 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10156 (clpA, b0882) -> ClpA EG11111 (cspD, b0880) -> DNA replication inhibitor EG11344 (mnmA, b1133) -> tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase EG12690 (rarA, b0892) -> recombination factor G6463 (clpS, b0881) -> specificity factor for ClpA-ClpP chaperone-protease complex |
| Group 322 | Genes common to all candidates in group EG11201 (yigA, b3810) -> conserved protein EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG10312 (fimE, b4313) -> regulator for fimA EG10209 (dapF, b3809) -> diaminopimelate epimerase | |||||
| Candidate 0703 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG10309 (fimB, b4312) -> regulator for fimA | |
| Candidate 0701 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG11202 (yigB, b3812) -> FMN phosphatase |
| Group 323 | Candidate 0700 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10209 (dapF, b3809) -> diaminopimelate epimerase EG10549 (lysA, b2838) -> LysA EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG11201 (yigA, b3810) -> conserved protein EG11653 (cyaY, b3807) -> frataxin, iron-binding and oxidizing protein |
| Group 324 | Candidate 0716 | 0.999 | 0 | 0.800 | 5 | Genes in candidate EG10153 (moeA, bisB) -> molybdopterin biosynthesis EG11511 (mog, bisD) -> predicted molybdochelatase EG11595 (moaA, bisA) -> molybdopterin biosynthesis protein A EG11596 (moaB, b0782) -> MoaB subunit EG11829 (mobA, b3857) -> molybdopterin guanine dinucleotide synthase |
| Group 325 | Candidate 0530 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG12358 (ssuB, b0933) -> SsuB G6476 (ssuC, b0934) -> SsuC G6477 (ssuD, b0935) -> alkanesulfonate monooxygenase G6478 (ssuA, b0936) -> SsuA G6479 (ssuE, b0937) -> NAD(P)H-dependent FMN reductase monomer |
| Group 326 | Candidate 0702 | 0.999 | 0 | 0.800 | 5 | Genes in candidate EG10209 (dapF, b3809) -> diaminopimelate epimerase EG10309 (fimB, b4312) -> regulator for fimA EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG11676 (hslV, b3932) -> peptidase component of the HslVU protease EG11881 (hslU, b3931) -> ATPase component of the HslVU protease |
| Group 327 | Candidate 0539 | 0.999 | 5 | 0.000 | 5 | Genes in candidate EG11748 (yadD, b0132) -> predicted transposase EG11750 (yhgA, b3411) -> predicted transposase EG12323 (yfaD, b2244) -> conserved protein G7197 (yfcI, b2305) -> conserved protein G7934 (yjiP, b4338) -> predicted transposase |
| Group 328 | Candidate 0713 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10167 (cstA, b0598) -> peptide transporter induced by carbon starvation EG12006 (yehT, b2125) -> two-component response regulator EG12007 (yehU, b2126) -> predicted sensory kinase in two-component system with YehT G7243 (ypdA, b2380) -> predicted sensory kinase in two-component system with YpdB G7942 (yjiY, b4354) -> predicted inner membrane protein |
| Group 329 | Candidate 0591 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10763 (priA, b3935) -> primosome factor N' EG10889 (rpmE, b3936) -> 50S ribosomal subunit protein L31 EG11529 (ftsN, b3933) -> essential cell division protein FtsN EG11676 (hslV, b3932) -> peptidase component of the HslVU protease EG11881 (hslU, b3931) -> ATPase component of the HslVU protease |
| Group 330 | Candidate 0556 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11254 (rlmH, b0636) -> 23S rRNA m3Ψ1915 methyltransferase EG11255 (ybeB, b0637) -> predicted protein EG11298 (yhdE, b3248) -> conserved protein EG11299 (rng, b3247) -> ribonuclease G (RNAse G) monomer G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase |
| Group 331 | Candidate 0666 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10332 (frdC, b4152) -> fumarate reductase membrane protein EG10333 (frdD, b4151) -> fumarate reductase membrane protein EG11211 (poxA, b4155) -> predicted regulator of pyruvate oxidase EG12099 (efp, b4147) -> protein chain elongation factor EF-P G7836 (yjeK, b4146) -> lysine 2,3-aminomutase |
| Group 332 | Candidate 0673 | 0.999 | 0 | 0.000 | 5 | Genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) EG10313 (fimF, b4318) -> fimbrial morphology EG10314 (fimG, b4319) -> fimbrial morphology G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G6794 (ydeS, b1504) -> predicted fimbrial-like adhesin protein |
| Group 333 | Candidate 0528 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG12407 (iaaA, b0828) -> β cleavage product of IaaA G6429 (gsiA, b0829) -> GsiA G6430 (gsiB, b0830) -> GsiB G6431 (gsiC, b0831) -> GsiC G6432 (gsiD, b0832) -> GsiD |
| Group 334 | Candidate 0759 | 0.999 | 0 | 0.000 | 5 | Genes in candidate EG10008 (zraS, b4003) -> ZraS sensory histidine kinase - phosphorylated EG10387 (glnL, b3869) -> NtrB EG10482 (zraR, b4004) -> ZraR-Phosphorylated transcriptional activator EG11667 (atoS, b2219) -> AtoS sensory histidine kinase - phosphorylated EG11668 (atoC, b2220) -> AtoC-phosphorylated transcriptional activator |
| Group 335 | Candidate 0532 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG12061 (napB, b2203) -> small subunit of periplasmic nitrate reductase, cytochrome c550 protein EG12062 (napH, b2204) -> ferredoxin-type protein EG12064 (napG, b2205) -> ferredoxin-type protein EG12068 (napF, b2208) -> ferredoxin-type protein G6513 (yccM, b0992) -> predicted 4Fe-4S membrane protein |
| Group 336 | Candidate 0687 | 0.999 | 0 | 0.800 | 5 | Genes in candidate EG10259 (entA, b0596) -> EntA EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG12019 (yohF, b2137) -> predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain EG12133 (ucpA, b2426) -> predicted oxidoreductase, sulfate metabolism protein |
| Group 337 | Genes common to all candidates in group EG10434 (hemY, b3802) -> predicted protoheme IX synthesis protein EG10433 (hemX, b3803) -> conserved protein EG10430 (hemD, b3804) -> uroporphyrinogen III synthase EG10429 (hemC, b3805) -> hydroxymethylbilane synthase | |||||
| Candidate 0639 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11223 (argH, b3960) -> argininosuccinate lyase | |
| Candidate 0665 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10334 (fre, b3844) -> FMN reductase |
| Group 338 | Candidate 0525 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG12769 (agaB, b3138) -> AgaB EG12770 (agaC, b3139) -> AgaC G7632 (agaV, b3133) -> PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) G7633 (agaW, b3134) -> PTS system N-acetylgalactosameine-specific IIC component 2 G7635 (agaD, b3140) -> AgaD |
| Group 339 | Candidate 0667 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10332 (frdC, b4152) -> fumarate reductase membrane protein EG10333 (frdD, b4151) -> fumarate reductase membrane protein EG11211 (poxA, b4155) -> predicted regulator of pyruvate oxidase |
| Group 340 | Candidate 0647 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG10394 (glpD, b3426) -> GlpD EG10400 (glpR, b3423) -> GlpR transcriptional repressor EG11849 (yihW, b3884) -> predicted DNA-binding transcriptional regulator G6957 (ydjF, b1770) -> predicted DNA-binding transcriptional regulator G7913 (sgcR, b4300) -> Putative sgc cluster transcriptional regulator |
| Group 341 | Candidate 0675 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10308 (fimA, b4314) -> major type 1 subunit fimbrin (pilin) EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6387 (ybgQ, b0718) -> predicted outer membrane usher protein |
| Group 342 | Genes common to all candidates in group EG10512 (kbl, b3617) -> Kbl EG10122 (bioH, bioH) -> carboxylesterase EG10119 (bioC, bioC) -> BioC methyltransferase EG10118 (bioB, bioB) -> biotin synthase monomer | |||||
| Candidate 0725 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG10121 (bioF, bioF) -> 8-amino-7-oxononanoate synthase monomer | |
| Candidate 0724 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7747 (gntX, b3413) -> protein involved in utilization of DNA as a carbon source |
| Group 343 | Genes common to all candidates in group EG10720 (phnK, b4097) -> PhnK EG10677 (oppD, b1246) -> OppD EG10676 (oppC, b1245) -> OppC EG10675 (oppB, b1244) -> OppB | |||||
| Candidate 0607 | 0.999 | 1 | 0.800 | 5 | Additional genes in candidate EG12040 (yejE, b2179) -> YejE | |
| Candidate 0606 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate G6778 (ddpD, b1484) -> YddP |
| Group 344 | Genes common to all candidates in group RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair EG11096 (yajC, b0407) -> YajC EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer | |||||
| Candidate 0746 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10051 (apt, b0469) -> Apt | |
| Candidate 0582 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase |
| Group 345 | Candidate 0621 | 0.999 | 5 | 0.000 | 5 | Genes in candidate EG10563 (malX, b1621) -> MalX EG10635 (nagE, b0679) -> NagE EG10787 (ptsG, b1101) -> PtsG EG11709 (glvB, b3682) -> GlvB EG11710 (glvC, b3683) -> GlvC |
| Group 346 | Candidate 0753 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10035 (aldA, b1415) -> AldA EG10361 (gabT, b2662) -> 4-aminobutyrate aminotransferase monomer EG11329 (gabD, b2661) -> GabD G6646 (puuE, b1302) -> 4-aminobutyrate aminotransferase G6811 (sad, b1525) -> Sad |
| Group 347 | Candidate 0526 | 0.999 | 1 | 0.000 | 5 | Genes in candidate EG12587 (yjjL, b4356) -> L-galactonate MFS transporter EG12738 (exuT, b3093) -> ExuT hexuronate MFS transporter EG12760 (garP, b3127) -> YhaU MFS transporter EG20053 (dgoT, b3691) -> galactonate MFS transporter G7447 (gudP, b2789) -> YgcZ MFS transporter |
| Group 348 | Candidate 0635 | 0.999 | 5 | 0.200 | 5 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C |
| Group 349 | Genes common to all candidates in group EG11852 (dtd, b3887) -> D-Tyr-tRNATyr deacylase EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase EG10051 (apt, b0469) -> Apt | |||||
| Candidate 0750 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] | |
| Candidate 0748 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase |
| Group 350 | Genes common to all candidates in group RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase | |||||
| Candidate 0747 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10051 (apt, b0469) -> Apt | |
| Candidate 0729 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11137 (yebC, b1864) -> conserved protein |
| Group 351 | Candidate 0671 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10318 (fldA, b0684) -> oxidized flavodoxin 1 EG11775 (ybfE, b0685) -> LexA-regulated protein EG11776 (ybfF, b0686) -> esterase EG12144 (pgm, blu) -> phosphoglucomutase EG12197 (seqA, b0687) -> SeqA, negative modulator of initiation of replication |
| Group 352 | Candidate 0527 | 0.999 | 5 | 1.000 | 5 | Genes in candidate EG12494 (ulaB, b4194) -> UlaB G7855 (ulaG, b4192) -> L-ascorbate 6-phosphate lactonase G7858 (ulaD, b4196) -> 3-keto-L-gulonate 6-phosphate decarboxylase G7859 (ulaE, b4197) -> L-xylulose 5-phosphate 3-epimerase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase |
| Group 353 | Candidate 0554 | 0.999 | 4 | 0.600 | 5 | Genes in candidate EG11452 (rffD, b3787) -> UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG11456 (rffA, b3791) -> dTDP-4-oxo-6-deoxy-D-glucose transaminase EG12412 (rfbB, b2041) -> RmlB |
| Group 354 | Candidate 0644 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10423 (gyrA, b2231) -> DNA gyrase, subunit A EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG11143 (ubiG, b2232) -> UbiG EG12360 (yfaE, b2236) -> 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance |
| Group 355 | Candidate 0516 | 0.999 | 4 | 0.600 | 5 | Genes in candidate G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage G7502 (guaD, b2883) -> guanine deaminase |
| Group 356 | Candidate 0565 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11013 (topA, b1274) -> DNA topoisomerase I EG11604 (smf, b3286 (obsolete)) -> conserved protein EG11676 (hslV, b3932) -> peptidase component of the HslVU protease EG11881 (hslU, b3931) -> ATPase component of the HslVU protease G7699 (yrdD, b3283) -> predicted DNA topoisomerase |
| Group 357 | Candidate 0646 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair EG10831 (recN, b2616) -> protein used in recombination and DNA repair EG11782 (smpB, b2620) -> small protein B G7357 (yfjF, b2618) -> predicted protein G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair |
| Group 358 | Candidate 0613 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10624 (mutH, b2831) -> MutH EG11002 (thyA, b2827) -> thymidylate synthase EG12128 (lgt, b2828) -> phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) G7459 (rppH, b2830) -> RNA pyrophosphohydrolase |
| Group 359 | Candidate 0548 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11585 (thiC, b3994) -> thiamin biosynthesis protein ThiC EG11586 (thiE, b3993) -> thiamine phosphate synthase EG11587 (thiF, b3992) -> thiamin (thiazole moiety) biosynthesis protein EG11589 (thiG, b3991) -> thiazole synthase EG11590 (thiH, b3990) -> tyrosine lyase |
| Group 360 | Candidate 0668 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10746 (polA, b3863) -> DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease EG12312 (coaE, b0103) -> dephospho-CoA kinase EG12372 (ygdG, b2798) -> YgdG G6383 (nei, b0714) -> endonuclease VIII |
| Group 361 | Candidate 0634 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10481 (hycH, b2718) -> protein required for maturation of hydrogenase 3 G7305 (hyfH, b2488) -> hydrogenase 4, component H G7306 (hyfI, b2489) -> hydrogenase 4, small subunit G7307 (hyfJ, b2490) -> hydrogenase 4 component J, putative protein processing element |
| Group 362 | Candidate 0594 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10751 (potC, b1124) -> PotC EG11630 (potG, b0855) -> PotG EG11632 (potI, b0857) -> PotI EG11822 (puuB, b1301) -> γ-glutamylputrescine oxidase G6644 (puuA, b1297) -> glutamate-putrescine ligase |
| Group 363 | Candidate 0533 | 0.999 | 1 | 0.600 | 5 | Genes in candidate EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG11908 (frwC, b3949) -> FrwC EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 G7990 (fruB, b2169) -> FruB |
| Group 364 | Candidate 0579 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10858 (rnd, b1804) -> RNase D EG11530 (fadD, b1805) -> FadD G6990 (yeaY, b1806) -> predicted lipoprotein G6991 (yeaZ, b1807) -> protease specific for YgjD G6992 (yoaA, b1808) -> conserved protein |
| Group 365 | Candidate 0622 | 0.999 | 5 | 0.800 | 5 | Genes in candidate EG10554 (malE, b4034) -> MalE EG10555 (malF, b4033) -> MalF EG10556 (malG, b4032) -> MalG EG10565 (malZ, b0403) -> maltodextrin glucosidase EG11316 (malS, b3571) -> α-amylase |
| Group 366 | Candidate 0757 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10020 (cpxR, b3912) -> CpxR-Phosphorylated EG10061 (arcA, b4401) -> ArcA-Phosphorylated transcriptional dual regulator EG10672 (ompR, b3405) -> OmpR-Phosphorylated EG12615 (torR, b0995) -> TorR G6864 (rstA, b1608) -> RstA-Phosphorylated transcriptional regulator |
| Group 367 | Candidate 0534 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG11815 (torC, b0996) -> TorC trimethylamine N-oxide reductase, cytochrome c-type subunit EG12060 (napC, b2202) -> cytochrome c protein EG12061 (napB, b2203) -> small subunit of periplasmic nitrate reductase, cytochrome c550 protein EG12067 (napA, b2206) -> large subunit of periplasmic nitrate reductase, molybdoprotein G7023 (torY, b1873) -> trimethylamine N-oxide reductase III, c-type cytochrome subunit |
| Group 368 | Candidate 0651 | 0.999 | 1 | 1.000 | 5 | Genes in candidate EG10386 (glnH, b0811) -> GlnH EG10388 (glnP, b0810) -> GlnP EG10389 (glnQ, b0809) -> GlnQ EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily EG12662 (gltK, b0653) -> GltK |
| Group 369 | Candidate 0742 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10057 (araF, b1901) -> AraF EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) G7341 (yphE, b2547) -> YphE G7342 (yphF, b2548) -> YphF |
| Group 370 | Candidate 0768 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10346 (ftsY, b3464) -> SRP receptor EG10763 (priA, b3935) -> primosome factor N' EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase |
| Group 371 | Candidate 0659 | 0.999 | 1 | 0.800 | 5 | Genes in candidate EG10359 (fur, b0683) -> Fur EG11734 (phoH, b1020) -> ATP-binding protein G6362 (ybeY, b0659) -> conserved protein involved in translation G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 372 | Candidate 0520 | 0.999 | 0 | 1.000 | 5 | Genes in candidate G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G6802 (lsrD, b1515) -> LsrD G6803 (lsrB, b1516) -> LsrB G7341 (yphE, b2547) -> YphE |
| Group 373 | Candidate 0614 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10618 (mukB, b0924) -> cell division protein involved in chromosome partitioning EG11252 (mukE, b0923) -> protein involved in chromosome partitioning EG12165 (mukF, b0922) -> Ca2+-binding protein involved in chromosome partitioning EG12166 (ycbC, b0920) -> conserved inner membrane protein EG12167 (smtA, b0921) -> predicted S-adenosylmethionine-dependent methyltransferase |
| Group 374 | Candidate 0620 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase EG11619 (mfd, b1114) -> transcription-repair coupling factor EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer |
| Group 375 | Candidate 0517 | 0.999 | 0 | 1.000 | 5 | Genes in candidate G7166 (arnB, b2253) -> UDP-L-Ara4O C-4" transaminase G7167 (arnC, b2254) -> undecaprenyl phosphate-L-Ara4FN transferase G7168 (arnA, b2255) -> fused UDP-L-Ara4N formyltransferase and UDP-GlcA C-4''-decarboxylase G7169 (arnD, b2256) -> conserved protein G7170 (arnT, b2257) -> 4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase |
| Group 376 | Candidate 0581 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG10819 (rbsR, b3753) -> RbsR transcriptional repressor EG11646 (pscK, b2166) -> predicted pseudouridine kinase EG12028 (yeiI, b2160) -> predicted kinase G6658 (ycjW, b1320) -> predicted DNA-binding transcriptional regulator, LacI type |
| Group 377 | Candidate 0669 | 0.999 | 2 | 1.000 | 5 | Genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10346 (ftsY, b3464) -> SRP receptor EG10897 (rpoH, b3461) -> RNA polymerase, sigma 32 (sigma H) factor EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer |
| Group 378 | Genes common to all candidates in group EG11028 (trpE, b1264) -> anthranilate synthase component I EG11957 (alsE, b4085) -> allulose-6-phosphate 3-epimerase M004 (rpe, b3386) -> ribulose phosphate 3-epimerase | |||||
| Candidate 0603 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG10682 (pabA, b3360) -> PabA EG11871 (gph, b3385) -> phosphoglycolate phosphatase | |
| Candidate 0564 | 0.999 | 0 | 0.600 | 5 | Additional genes in candidate EG11871 (gph, b3385) -> phosphoglycolate phosphatase G7914 (sgcE, b4301) -> predicted epimerase | |
| Candidate 0751 | 0.999 | 0 | 0.800 | 5 | Additional genes in candidate EG10047 (apaG, b0050) -> hypothetical protein EG10682 (pabA, b3360) -> PabA |
| Group 379 | Candidate 0553 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG11455 (rffC, b3790) -> dTDP-fucosamine acetyltransferase EG11456 (rffA, b3791) -> dTDP-4-oxo-6-deoxy-D-glucose transaminase EG11457 (wzyE, b3793) -> predicted Wzy protein involved in ECA polysaccharide chain elongation EG11486 (wzxE, b3792) -> lipid III flippase G7800 (rffT, b4404 (obsolete)) -> 4-acetamido-4,6-dideoxy-D-galactose transferase |
| Group 380 | Candidate 0656 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10371 (gcvH, b2904) -> lipoyl-GcvH-protein EG11323 (ygfB, b2909) -> predicted protein EG11442 (gcvT, b2905) -> aminomethyltransferase EG11810 (gcvP, b2903) -> glycine decarboxylase EG12878 (zapA, b2910) -> protein that localizes to the cytokinetic ring |
| Group 381 | Candidate 0559 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG11189 (waaC, b3621) -> ADP-heptose:LPS heptosyl transferase I EG11339 (waaG, b3631) -> lipopolysaccharide glucosyltransferase I EG11340 (waaP, b3630) -> lipopolysaccharide core heptose (I) kinase EG11341 (waaQ, b3632) -> lipopolysaccharide core heptosyl transferase III EG12210 (waaF, b3620) -> ADP-heptose:LPS heptosyltransferase II |
| Group 382 | Candidate 0670 | 0.999 | 3 | 1.000 | 5 | Genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11447 (csrA, b2696) -> carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 |
| Group 383 | Genes common to all candidates in group G7713 (yheM, b3344) -> sulfur transfer protein complex, TusC subunit G7714 (yheN, b3345) -> sulfur transfer protein complex, TusD subunit G7715 (yheO, b3346) -> predicted DNA-binding transcriptional regulator | |||||
| Candidate 0515 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate G7712 (yheL, b3343) -> sulfur transfer protein complex, TusB subunit G7716 (fkpA, b3347) -> peptidyl-prolyl cis-trans isomerase; in protein folding | |
| Candidate 0541 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11664 (slyX, b3348) -> host factor for lysis of φX174 infection G7716 (fkpA, b3347) -> peptidyl-prolyl cis-trans isomerase; in protein folding | |
| Candidate 0573 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 G7712 (yheL, b3343) -> sulfur transfer protein complex, TusB subunit |
| Group 384 | Candidate 0678 | 0.999 | 0 | 0.600 | 5 | Genes in candidate EG10284 (fdhE, b3891) -> formate dehydrogenase formation protein EG11229 (fdnI, b1476) -> formate dehydrogenase N, γ subunit EG11856 (fdoI, b3892) -> formate dehydrogenase-O, γ subunit EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit EG11859 (fdhD, b3895) -> affects formate dehydrogenase-N |
| Group 385 | Candidate 0610 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10658 (bamC, bamC) -> BamC EG11149 (gcvR, b2479) -> GcvR predicted transcriptional regulator G7310 (yfgO, b2493) -> predicted inner membrane protein G7311 (yfgC, b2494) -> predicted peptidase G7312 (yfgD, b2495) -> predicted oxidoreductase |
| Group 386 | Candidate 0616 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10608 (mreB, b3251) -> MreB EG10609 (mreC, b3250) -> MreC EG10610 (mreD, b3249) -> MreD EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr G7690 (yhdP, b3246 (obsolete)) -> conserved membrane protein, predicted transporter |
| Group 387 | Candidate 0624 | 0.999 | 8 | 0.800 | 5 | Genes in candidate EG10543 (lpd, b0116) -> E3 monomer EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG11428 (sthA, b3962) -> SthA G6174 (ykgC, b0304) -> predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain |
| Group 388 | Genes common to all candidates in group EG10383 (glnA, b3870) -> adenylyl-[glutamine synthetase] EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG11837 (typA, bipA) -> protein possibly involved in ribosome structure or function | |||||
| Candidate 0654 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10387 (glnL, b3869) -> NtrB EG11853 (yiiD, b3888) -> predicted acetyltransferase | |
| Candidate 0653 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG11852 (dtd, b3887) -> D-Tyr-tRNATyr deacylase EG11853 (yiiD, b3888) -> predicted acetyltransferase | |
| Candidate 0655 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10387 (glnL, b3869) -> NtrB EG11835 (yihI, b3866) -> GAP-like protein that activates GTPase activity of Der |
| Group 389 | Candidate 0672 | 0.999 | 0 | 0.200 | 5 | Genes in candidate EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG12397 (ycbF, b0944) -> predicted periplasmic pilin chaperone G6291 (sfmC, b0531) -> predicted pilin chaperone, periplasmic G6480 (ycbQ, b0938) -> fimbrial-like adhesin protein G6481 (ycbR, b0939) -> predicted periplasmic pilin chaperone |
| Group 390 | Candidate 0727 | 0.999 | 1 | 1.000 | 5 | Genes in candidate EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10889 (rpmE, b3936) -> 50S ribosomal subunit protein L31 |
| Group 391 | Candidate 0598 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10695 (pepD, b0237) -> PepD EG10767 (proA, b0243) -> ProA EG10768 (proB, b0242) -> ProB EG11091 (frsA, b0239) -> fermentation/respiration switch protein EG11092 (crl, b0240) -> Crl transcriptional regulator |
| Group 392 | Candidate 0720 | 0.999 | 0 | 0.800 | 5 | Genes in candidate EG10127 (btuC, btuC) -> BtuC EG10128 (btuD, btuD) -> BtuD EG10288 (fecC, b4289) -> FecC EG10289 (fecD, b4288) -> FecD EG10298 (fepG, b0589) -> FepG |
| Group 393 | Candidate 0741 | 0.999 | 11 | 1.000 | 5 | Genes in candidate EG10063 (argA, b2818) -> ArgA EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG10068 (argG, b3172) -> ArgG EG11223 (argH, b3960) -> argininosuccinate lyase |
| Group 394 | Candidate 0540 | 0.999 | 1 | 0.000 | 5 | Genes in candidate EG11725 (yieH, b3715) -> 6-phosphogluconate phosphatase G6655 (ycjU, b1317) -> β-phosphoglucomutase G6932 (yniC, b1727) -> 2-deoxyglucose-6-phosphatase G7187 (yfbT, b2293) -> sugar phosphatase G7408 (yqaB, b2690) -> fructose-1-phosphatase |
| Group 395 | Candidate 0628 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10519 (kdsB, b0918) -> 3-deoxy-D-manno-octulosonate cytidylyltransferase EG10613 (msbA, b0914) -> ATP-binding lipopolysaccharide transport protein EG11409 (lpxK, b0915) -> tetraacyldisaccharide 4'-kinase EG12375 (ycaI, b0913) -> conserved inner membrane protein G6472 (ycaR, b0917) -> conserved protein |
| Group 396 | Genes common to all candidates in group EG11158 (ygfA, b2912) -> predicted ligase EG11323 (ygfB, b2909) -> predicted protein EG12878 (zapA, b2910) -> protein that localizes to the cytokinetic ring | |||||
| Candidate 0569 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10944 (serA, b2913) -> SerA EG11443 (rpiA, b2914) -> ribose-5-phosphate isomerase A | |
| Candidate 0596 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10697 (pepP, b2908) -> PepP EG11443 (rpiA, b2914) -> ribose-5-phosphate isomerase A | |
| Candidate 0570 | 0.999 | 0 | 1.000 | 5 | Additional genes in candidate EG10944 (serA, b2913) -> SerA EG11324 (ubiH, b2907) -> 2-octaprenyl-6-methoxyphenol hydroxylase |
| Group 397 | Candidate 0615 | 0.999 | 0 | 0.400 | 5 | Genes in candidate EG10615 (mtlA, b3599) -> MtlA EG10616 (mtlD, b3600) -> mannitol-1-phosphate 5-dehydrogenase EG11162 (yggD, b2929) -> predicted DNA-binding transcriptional regulator EG11792 (cmtA, b2933) -> CmtA EG11965 (mtlR, b3601) -> MtlR transcriptional repressor |
| Group 398 | Candidate 0664 | 0.999 | 0 | 1.000 | 5 | Genes in candidate EG10346 (ftsY, b3464) -> SRP receptor EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase EG11604 (smf, b3286 (obsolete)) -> conserved protein EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase G7699 (yrdD, b3283) -> predicted DNA topoisomerase |
| Group 399 | Candidate 0518 | 0.999 | 0 | 1.000 | 5 | Genes in candidate G6940 (astE, b1744) -> succinylglutamate desuccinylase G6941 (astB, b1745) -> succinylarginine dihydrolase G6942 (astD, b1746) -> aldehyde dehydrogenase G6943 (astA, b1747) -> arginine succinyltransferase G6944 (astC, b1748) -> AstC |
| Group 400 | Candidate 0693 | 0.999 | 7 | 0.000 | 5 | Genes in candidate EG10233 (dmsB, b0895) -> dimethyl sulfoxide reductase, chain B EG11228 (fdnH, b1475) -> formate dehydrogenase N, β subunit EG11799 (hybA, b2996) -> hydrogenase 2 4Fe-4S ferredoxin-type component EG11857 (fdoH, b3893) -> formate dehydrogenase-O, β subunit G6847 (ynfG, b1589) -> oxidoreductase, predicted Fe-S subunit |
| Group 401 | Candidate 1017 | 1.000 | 0 | 0.500 | 4 | Genes in candidate EG10383 (glnA, b3870) -> adenylyl-[glutamine synthetase] EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG10387 (glnL, b3869) -> NtrB EG11668 (atoC, b2220) -> AtoC-phosphorylated transcriptional activator |
| Group 402 | Candidate 0878 | 1.000 | 0 | 0.250 | 4 | Genes in candidate EG11066 (uxuA, b4322) -> D-mannonate dehydratase EG12036 (yeiQ, b2172) -> predicted dehydrogenase, NAD-dependent EG20248 (uxuB, b4323) -> D-mannonate oxidoreductase G6816 (ydfI, b1542) -> predicted mannonate dehydrogenase |
| Group 403 | Candidate 0874 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG11133 (nlpC, b1708) -> NlpC-putative lipoprotein hydrolase G6111 (yafL, b0227) -> predicted lipoprotein and C40 family peptidase G6892 (ydhO, b1655) -> predicted lipoprotein G7147 (spr, b2175) -> predicted peptidase, outer membrane lipoprotein |
| Group 404 | Candidate 0834 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG11691 (yicO, b3664) -> putative membrane protein with possible relationship to novobiocin and deoxycholate resistance EG11724 (yieG, b3714) -> PurP adenine transporter EG11939 (yjcD, b4064) -> predicted permease G7503 (ygfQ, b2885 (obsolete)) -> predicted transporter |
| Group 405 | Candidate 0943 | 1.000 | 1 | 0.500 | 4 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12360 (yfaE, b2236) -> 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance EG12381 (nrdF, b2676) -> NrdF |
| Group 406 | Candidate 0788 | 1.000 | 0 | 0.000 | 4 | Genes in candidate G6490 (pqiA, b0950) -> paraquat-inducible protein A G6491 (pqiB, b0951) -> paraquat-inducible protein B G7006 (yebS, b1833) -> conserved inner membrane protein G7007 (yebT, b1834) -> conserved protein |
| Group 407 | Candidate 0790 | 1.000 | 0 | 0.000 | 4 | Genes in candidate G6422 (ybiS, b0819) -> L,D-transpeptidase YbiS G6571 (ycfS, b1113) -> L,D-transpeptidase YcfS G6904 (ynhG, b1678) -> L,D-transpeptidase YnhG G7073 (erfK, b1990) -> L,D-transpeptidase ErfK |
| Group 408 | Candidate 0792 | 1.000 | 0 | 0.000 | 4 | Genes in candidate G6318 (cusS, b0570) -> CusS-Phis G6319 (cusR, b0571) -> CusR-Pasp transcriptional activator G7056 (yedV, b1968) -> predicted sensory kinase in two-component regulatory system with YedW G7057 (yedW, b1969) -> predicted DNA-binding response regulator in two-component system with YedV |
| Group 409 | Candidate 1026 | 1.000 | 3 | 0.000 | 4 | Genes in candidate EG10356 (fumA, b1612) -> fumarase A monomer EG10357 (fumB, b4122) -> fumarase B monomer EG11168 (ttdA, b3061) -> L-tartrate dehydratase, α subunit EG11169 (ttdB, b3062) -> L-tartrate dehydratase, β subunit |
| Group 410 | Candidate 0820 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG12006 (yehT, b2125) -> two-component response regulator EG12007 (yehU, b2126) -> predicted sensory kinase in two-component system with YehT G7243 (ypdA, b2380) -> predicted sensory kinase in two-component system with YpdB G7244 (ypdB, b2381) -> predicted response regulator in two-component system with YpdA |
| Group 411 | Candidate 0982 | 1.000 | 0 | 1.000 | 4 | Genes in candidate EG10508 (ispA, b0421) -> geranyl diphosphate synthase / farnesyl diphosphate synthase EG11098 (xseB, b0422) -> exonuclease VII, small subunit G6237 (dxs, b0420) -> Dxs G6238 (thiI, b0423) -> ThiI |
| Group 412 | Candidate 1022 | 1.000 | 0 | 1.000 | 4 | Genes in candidate EG10367 (gapA, b1779) -> glyceraldehyde 3-phosphate dehydrogenase-A monomer EG10368 (epd, b2927) -> Epd EG10703 (pgk, b2926) -> phosphoglycerate kinase EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer |
| Group 413 | Candidate 0796 | 1.000 | 0 | 1.000 | 4 | Genes in candidate G0-8601 (glcF, b2978 (obsolete)) -> glycolate oxidase, predicted iron-sulfur subunit G6913 (ydiJ, b1687) -> predicted FAD-linked oxidoreductase G7439 (ygcU, b2772 (obsolete)) -> predicted FAD-containing dehydrogenase G7545 (glcD, b2979) -> glycolate oxidase, predicted FAD-linked subunit |
| Group 414 | Candidate 0806 | 1.000 | 0 | 0.250 | 4 | Genes in candidate EG12361 (kduD, b2842) -> 2-deoxy-D-gluconate 3-dehydrogenase G7440 (ygcW, b2774) -> predicted deoxygluconate dehydrogenase G7463 (kduI, b2843) -> predicted 5-keto 4-deoxyuronate isomerase G7892 (idnO, b4266) -> 5-keto-D-gluconate 5-reductase |
| Group 415 | Candidate 0915 | 1.000 | 0 | 0.500 | 4 | Genes in candidate EG10823 (recA, b2699) -> DNA strand exchange and recombination protein with protease and nuclease activity EG11645 (ydeJ, b1537) -> conserved protein G7162 (yfaY, b2249) -> conserved protein G7409 (ygaD, b2700) -> conserved protein |
| Group 416 | Candidate 0829 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG11783 (intA, b2622) -> CP4-57 prophage; integrase EG12364 (intB, b4271) -> KpLE2 phage-like element; predicted integrase G7218 (intS, b2349) -> CPS-53 (KpLE1) prophage; prophage CPS-53 integrase G7272 (intZ, b2442) -> CPZ-55 prophage; predicted integrase |
| Group 417 | Candidate 0936 | 1.000 | 0 | 0.500 | 4 | Genes in candidate EG10697 (pepP, b2908) -> PepP EG10698 (pepQ, b3847) -> proline dipeptidase EG11323 (ygfB, b2909) -> predicted protein EG11324 (ubiH, b2907) -> 2-octaprenyl-6-methoxyphenol hydroxylase |
| Group 418 | Candidate 0810 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG12308 (yfhH, b2561) -> predicted DNA-binding transcriptional regulator EG12860 (yebK, b1853) -> predicted DNA-binding transcriptional regulator G7262 (murR, b2427) -> MurR G7821 (rpiR, b4089) -> AlsR-allose |
| Group 419 | Candidate 1089 | 1.000 | 0 | 1.000 | 4 | Genes in candidate EG10157 (clpB, b2592) -> ClpB chaperone EG12097 (yfiH, b2593) -> conserved protein EG12098 (rluD, b2594) -> 23S rRNA pseudouridine synthase G7352 (bamD, bamD) -> BamD |
| Group 420 | Candidate 1128 | 1.000 | 0 | 1.000 | 4 | Genes in candidate EG10002 (modB, b0764) -> ModB EG10152 (modC, b0765) -> ModC EG12427 (modA, b0763) -> ModA G6395 (modE, b0761) -> ModE |
| Group 421 | Candidate 1044 | 1.000 | 10 | 0.000 | 4 | Genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer EG12419 (gatY, b2096) -> GatY EG12768 (kbaY, b3137) -> KbaY G6960 (ydjI, b1773) -> predicted aldolase |
| Group 422 | Candidate 0791 | 1.000 | 0 | 0.000 | 4 | Genes in candidate G6345 (dpiB, b0619) -> DpiB sensory histidine kinase - phosphorylated G6346 (dpiA, b0620) -> DpiA-Pasp DNA binding transcriptional dual regulator G7826 (dcuR, b4124) -> DcuR G7827 (dcuS, b4125) -> DcuS sensory histidine kinase - phosphorylated |
| Group 423 | Candidate 0812 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG12232 (dtpB, b3496) -> DtpB dipeptide transporter EG12469 (yjdL, b4130) -> YjdL peptide transporter G6378 (dtpD, b0709) -> DtpD peptide POT Transporter G6877 (tppB, b1634) -> TppB peptide POT Transporter |
| Group 424 | Candidate 0931 | 1.000 | 0 | 0.250 | 4 | Genes in candidate EG10748 (mrcA, b3396) -> peptidoglycan synthetase; penicillin-binding protein 1A EG11363 (amiB, b4169) -> N-acetylmuramoyl-L-alanine amidase 2 EG11823 (amiA, b2435) -> N-acetylmuramoyl-L-alanine amidase 1 G7458 (amiC, b2817) -> N-acetylmuramyl-L-alanine amidase |
| Group 425 | Candidate 0951 | 1.000 | 0 | 0.250 | 4 | Genes in candidate EG10629 (emrE, b0543) -> EmrE SMR transporter EG11616 (sugE, b4148) -> SugE SMR transporter G6857 (mdtI, b1599) -> MdtI SMR Protein G6858 (mdtJ, b1600) -> MdtJ SMR protein |
| Group 426 | Candidate 1114 | 1.000 | 0 | 0.000 | 4 | Genes in candidate EG10060 (araJ, b0396) -> AraJ MFS transporter EG11636 (ydeA, b1528) -> YdeA MFS transporter EG11689 (nepI, b3662) -> NepI MFS ribonucleoside transporter G6893 (ydhP, b1657) -> YdhP |
| Group 427 | Candidate 0849 | 1.000 | 0 | 1.000 | 4 | Genes in candidate EG11481 (tatD, b3841 (obsolete)) -> Tat-linked protein quality control EG12302 (tmk, b1098) -> dTMP kinase EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase G7952 (yjjV, b4378) -> predicted DNase |
| Group 428 | Candidate 0844 | 1.000 | 4 | 0.000 | 4 | Genes in candidate EG11556 (talB, b0008) -> transaldolase B EG11797 (talA, b2464) -> transaldolase A EG11905 (fsaB, b3946) -> fructose 6-phosphate aldolase 2 G6428 (fsaA, b0825) -> Fsa |
| Group 429 | Candidate 0838 | 1.000 | 0 | 0.250 | 4 | Genes in candidate EG11614 (basS, basS) -> BasS sensory histidine kinase - phosphorylated EG11615 (basR, basR) -> BasR-Phosphorylated transcriptional regulator EG12658 (qseC, b3026) -> QseC sensory histidine kinase - phosphorylated G7575 (qseB, b3025) -> QseB-Phosphorylated transcriptional activator |
| Group 430 | Genes common to all candidates in group EG10896 (rpoD, b3067) -> RNA polymerase, sigma 70 (sigma D) factor EG10510 (rpoS, b2741) -> RNA polymerase, sigma S (sigma 38) factor EG10239 (dnaG, b3066) -> DNA primase | |||||
| Candidate 1064 | 1.000 | 0 | 0.750 | 4 | Additional genes in candidate EG10897 (rpoH, b3461) -> RNA polymerase, sigma 32 (sigma H) factor | |
| Candidate 1063 | 1.000 | 0 | 0.750 | 4 | Additional genes in candidate EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 |
| Group 431 | Genes common to all candidates in group EG12150 (cobS, b1992) -> cobalamin 5'-phosphate synthase / cobalamin synthase EG12151 (cobT, b1991) -> CobT EG13238 (cobU, b1993) -> CobU | |||||
| Candidate 0815 | 1.000 | 0 | 1.000 | 4 | Additional genes in candidate G6349 (cobC, b0638) -> predicted α-ribazole-5'-P phosphatase | |
| Candidate 1095 | 1.000 | 0 | 1.000 | 4 | Additional genes in candidate EG10130 (btuR, btuR) -> cobinamide adenosyltransferase / cobalamin adenosyltransferase | |
| Candidate 0816 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12334 (btuF, btuF) -> periplasmic vitamin B12 binding protein |
| Group 432 | Genes common to all candidates in group G7263 (murQ, b2428) -> N-acetylmuramic acid 6-phosphate etherase G7262 (murR, b2427) -> MurR EG12308 (yfhH, b2561) -> predicted DNA-binding transcriptional regulator | |||||
| Candidate 0809 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G7264 (murP, b2429) -> MurP | |
| Candidate 0808 | 1.000 | 0 | 0.250 | 4 | Additional genes in candidate G7821 (rpiR, b4089) -> AlsR-allose |
| Group 433 | Genes common to all candidates in group G6575 (lolE, b1118) -> LolE G6573 (lolC, b1116) -> LolC EG12375 (ycaI, b0913) -> conserved inner membrane protein | |||||
| Candidate 0855 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG11409 (lpxK, b0915) -> tetraacyldisaccharide 4'-kinase | |
| Candidate 0802 | 1.000 | 0 | 0.500 | 4 | Additional genes in candidate G6574 (lolD, b1117) -> LolD |
| Group 434 | Genes common to all candidates in group EG12148 (galP, b2943) -> GalP - galactose MFS transporter EG11566 (yaaU, b0045) -> YaaU EG10056 (araE, b2841) -> AraE arabinose MFS transporter | |||||
| Candidate 1116 | 1.000 | 3 | 0.250 | 4 | Additional genes in candidate EG11076 (xylE, b4031) -> XylE xylose MFS transporter | |
| Candidate 1115 | 0.999 | 3 | 0.500 | 4 | Additional genes in candidate EG12369 (ydjE, b1769) -> YdjE MFS transporter |
| Group 435 | Genes common to all candidates in group EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 | |||||
| Candidate 1078 | 1.000 | 0 | 0.250 | 4 | Additional genes in candidate EG12015 (pbpG, b2134) -> penicillin-binding protein 7 | |
| Candidate 1077 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG12302 (tmk, b1098) -> dTMP kinase |
| Group 436 | Genes common to all candidates in group EG12462 (adiC, b4115) -> AdiC EG10753 (potE, b0692) -> putrescine/proton symporter: putrescine/ornithine antiporter EG10132 (cadB, b4132) -> CadB cadaverine/lysine APC exchanger | |||||
| Candidate 1094 | 0.999 | 1 | 0.000 | 4 | Additional genes in candidate EG12908 (frlA, b3370) -> predicted fructoselysine transporter | |
| Candidate 1093 | 1.000 | 7 | 0.000 | 4 | Additional genes in candidate G6861 (ydgI, b1605) -> ArcD APC transporter |
| Group 437 | Genes common to all candidates in group EG11527 (narP, b2193) -> NarP-Phosphorylated transcriptional dual regulator EG10646 (narX, b1222) -> NarX-Phis EG10643 (narL, b1221) -> NarL-Phosphorylated transcriptional dual regulator | |||||
| Candidate 0948 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter | |
| Candidate 0947 | 1.000 | 0 | 0.000 | 4 | Additional genes in candidate EG11460 (narQ, b2469) -> NarQ-Phis |
| Group 438 | Genes common to all candidates in group EG10810 (pyrG, b2780) -> PyrG EG10518 (kdsA, b1215) -> 3-deoxy-D-manno-octulosonate 8-phosphate synthase EG10258 (eno, b2779) -> Eno | |||||
| Candidate 1059 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12095 (secG, b3175) -> SecG | |
| Candidate 1058 | 1.000 | 0 | 1.000 | 4 | Additional genes in candidate G7424 (ftsB, b2748) -> essential cell division protein FtsB |
| Group 439 | Genes common to all candidates in group EG11737 (metI, b0198) -> MetI EG11621 (metN, b0199) -> MetN EG11504 (metQ, b0197) -> MetQ | |||||
| Candidate 0944 | 1.000 | 0 | 0.500 | 4 | Additional genes in candidate EG10657 (nlpA, b3661) -> lipoprotein-28 | |
| Candidate 0847 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11736 (gmhB, b0200) -> D,D-heptose 1,7-bisphosphate phosphatase |
| Group 440 | Genes common to all candidates in group G7507 (ygfU, b2888) -> YgfU NCS2 transporter G7501 (xanQ, b2882) -> XanQ xanthine NCS2 transporter EG11194 (xanP, b3654) -> XanP xanthine NCS2 transporter | |||||
| Candidate 0868 | 1.000 | 0 | 0.000 | 4 | Additional genes in candidate G6282 (ybbY, b0513) -> predicted uracil/xanthine transporter | |
| Candidate 0867 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate G7058 (yedX, b1970) -> conserved protein |
| Group 441 | Genes common to all candidates in group G7448 (yqcA, b2790) -> predicted flavoprotein EG10191 (cysJ, b2764) -> sulfite reductase, flavoprotein subunit EG10190 (cysI, b2763) -> sulfite reductase, hemoprotein subunit | |||||
| Candidate 1083 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate EG10189 (cysH, b2762) -> CysH | |
| Candidate 1082 | 1.000 | 0 | 0.500 | 4 | Additional genes in candidate EG11199 (mioC, b3742) -> flavoprotein involved in biotin synthesis |
| Group 442 | Genes common to all candidates in group EG12012 (osmF, b2131) -> OsmF EG12011 (yehY, b2130) -> YehY EG12010 (yehX, b2129) -> YehX | |||||
| Candidate 0819 | 1.000 | 0 | 0.500 | 4 | Additional genes in candidate EG12009 (yehW, b2128) -> YehW | |
| Candidate 0925 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10771 (proV, b2677) -> ProV |
| Group 443 | Genes common to all candidates in group EG11071 (xerD, b2894) -> site-specific recombinase EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG10312 (fimE, b4313) -> regulator for fimA | |||||
| Candidate 1068 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG10220 (deoB, b4383) -> phosphopentomutase | |
| Candidate 1041 | 1.000 | 0 | 0.250 | 4 | Additional genes in candidate EG10309 (fimB, b4312) -> regulator for fimA |
| Group 444 | Genes common to all candidates in group EG10196 (cysS, b0526) -> cysteinyl-tRNA synthetase EG10758 (ppiB, b0525) -> peptidyl-prolyl cis-trans isomerase B (rotamase B) EG12666 (lpxH, b0524) -> UDP-2,3-diacylglucosamine hydrolase | |||||
| Candidate 1081 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10328 (folD, b0529) -> FolD | |
| Candidate 1080 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10390 (glnS, b0680) -> glutaminyl-tRNA synthetase | |
| Candidate 1079 | 1.000 | 0 | 0.500 | 4 | Additional genes in candidate EG10757 (ppiA, b3363) -> peptidyl-prolyl cis-trans isomerase A (rotamase A) |
| Group 445 | Genes common to all candidates in group EG12035 (yeiP, b2171) -> predicted dehydrogenase, NAD-dependent EG12099 (efp, b4147) -> protein chain elongation factor EF-P G7248 (ypdF, b2385) -> aminopeptidase | |||||
| Candidate 1102 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10081 (aroK, b3390) -> shikimate kinase I | |
| Candidate 1046 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10275 (accB, b3255) -> biotinylated biotin-carboxyl carrier protein | |
| Candidate 0941 | 1.000 | 0 | 1.000 | 4 | Additional genes in candidate EG10666 (nusB, b0416) -> transcription antitermination protein NusB |
| Group 446 | Candidate 0884 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit EG11028 (trpE, b1264) -> anthranilate synthase component I EG12433 (rluB, b1269) -> 23S rRNA pseudouridine 2605 synthase |
| Group 447 | Genes common to all candidates in group G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer EG11734 (phoH, b1020) -> ATP-binding protein | |||||
| Candidate 0897 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 | |
| Candidate 0833 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate G6362 (ybeY, b0659) -> conserved protein involved in translation |
| Group 448 | Candidate 0890 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10976 (ssb, b4059) -> ssDNA-binding protein EG11061 (uvrA, b4058) -> excision nuclease subunit A G6241 (yajR, b0427) -> YajR MFS transporter G6559 (mdtH, b1065) -> YceL MFS transporter |
| Group 449 | Candidate 1045 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10281 (fadR, b1187) -> FadR transcriptional dual regulator EG11392 (nhaB, b1186) -> NhaB sodium/proton transporter EG11393 (dsbB, b1185) -> DsbBoxidised EG11516 (ycgB, b1188) -> conserved protein |
| Group 450 | Candidate 1090 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10141 (chbC, b1737) -> ChbC EG10142 (chbA, b1736) -> ChbA EG10144 (chbF, b1734) -> diacetylchitobiose-6-phosphate hydrolase EG12198 (chbG, b1733) -> conserved protein |
| Group 451 | Candidate 1117 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10053 (araB, b0063) -> L-ribulokinase monomer EG10350 (fucK, b2803) -> L-fuculokinase EG11075 (xylB, b3564) -> xylulokinase EG12284 (lyxK, b3580) -> L-xylulose kinase |
| Group 452 | Candidate 0957 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10596 (minC, b1176) -> cell division inhibitor of the MinC-MinD-MinE and DicB-MinC systems that regulate septum placement EG10597 (minD, b1175) -> membrane ATPase of the MinC-MinD-MinE system that regulates septum placement EG10598 (minE, b1174) -> cell division topological specificity factor and inhibitory component of the MinC-MinD-MinE system that regulates septum placement G6616 (ycgL, b1179) -> conserved protein |
| Group 453 | Candidate 1047 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10270 (era, b2566) -> GTP-binding protein EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 EG11734 (phoH, b1020) -> ATP-binding protein G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain |
| Group 454 | Candidate 1052 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG11087 (secM, b0097) -> secretion monitor that regulates SecA translation (General Secretory Pathway) |
| Group 455 | Genes common to all candidates in group G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA EG11827 (rpiB, b4090) -> allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer EG10761 (prfA, b1211) -> peptide chain release factor RF1 | |||||
| Candidate 0928 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11332 (upp, b2498) -> Upp | |
| Candidate 0927 | 0.999 | 1 | 0.500 | 4 | Additional genes in candidate G6635 (yciO, b1267) -> conserved protein |
| Group 456 | Candidate 0996 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10429 (hemC, b3805) -> hydroxymethylbilane synthase EG10433 (hemX, b3803) -> conserved protein EG10756 (ppc, b3956) -> Ppc EG11223 (argH, b3960) -> argininosuccinate lyase |
| Group 457 | Candidate 1122 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10025 (aceF, b0115) -> AceF-lipoate EG10543 (lpd, b0116) -> E3 monomer EG10980 (sucB, b0727) -> SucB EG11428 (sthA, b3962) -> SthA |
| Group 458 | Genes common to all candidates in group EG11452 (rffD, b3787) -> UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase EG11451 (rffE, b3786) -> UDP-N-acetylglucosamine-2-epimerase EG10840 (rfe, b3784) -> undecaprenyl-phosphate α-N-acetylglucosaminyl transferase | |||||
| Candidate 0911 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11295 (wzzE, b3785) -> Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein | |
| Candidate 0910 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11458 (rffM, b3794) -> UDP-N-acetyl-D-mannosaminuronic acid transferase |
| Group 459 | Candidate 1040 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10310 (fimC, b4316) -> periplasmic chaperone, required for type 1 fimbriae EG12388 (sfmF, b0534) -> predicted fimbrial-like adhesin protein G6386 (ybgP, b0717) -> putative fimbrial chaperone G6387 (ybgQ, b0718) -> predicted outer membrane usher protein |
| Group 460 | Candidate 0999 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase |
| Group 461 | Candidate 0777 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7271 (eutL, b2439) -> predicted structural protein, ethanolamine utilization microcompartment G7281 (eutA, b2451) -> reactivating factor for ethanolamine ammonia-lyase EutBC G7291 (eutP, b2461) -> conserved protein with nucleoside triphosphate hydrolase domain G7292 (eutS, b2462) -> predicted structural protein, ethanolamine utilization microcompartment |
| Group 462 | Genes common to all candidates in group G7213 (fadI, b2342) -> FadI monomer G7211 (sixA, b2340) -> phosphohistidine phosphatase G7200 (yfcL, b2325) -> predicted protein | |||||
| Candidate 0799 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12449 (prmB, b2330) -> N5-glutamine methyltransferase | |
| Candidate 0779 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7212 (fadJ, b2341) -> FadJ monomer |
| Group 463 | Genes common to all candidates in group G7031 (uspC, b1895) -> universal stress protein G6334 (uspG, b0607) -> universal stress protein UP12 EG11390 (uspA, b3495) -> universal stress global stress response regulator | |||||
| Candidate 0857 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG11877 (uspD, b3923) -> stress protein involved in resistance to UV irradiation | |
| Candidate 0856 | 0.999 | 0 | 0.000 | 4 | Additional genes in candidate G6699 (uspF, b1376) -> nucleotide binding filament protein |
| Group 464 | Candidate 0831 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG11764 (yibH, b3597) -> putative membrane protein EG11765 (yibI, b3598) -> predicted inner membrane protein EG12290 (yiaV, b3586) -> predicted membrane fusion protein (MFP) component of efflux pump, signal anchor EG12291 (yiaW, b3587) -> conserved inner membrane protein |
| Group 465 | Candidate 0992 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10445 (hisB, b2022) -> HisB EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase G7806 (tatA, b3836) -> TatA |
| Group 466 | Candidate 0887 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10987 (tap, b1885) -> Tap EG10988 (tar, b1886) -> Tar EG11018 (trg, b1421) -> Trg EG11034 (tsr, b4355) -> Tsr |
| Group 467 | Genes common to all candidates in group EG11373 (mltF, b2558) -> membrane-bound lytic murein transglycosylase F EG11372 (tadA, b2559) -> tRNA-specific adenosine deaminase monomer EG10420 (guaA, b2507) -> GMP synthetase | |||||
| Candidate 1002 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10421 (guaB, b2508) -> GuaB | |
| Candidate 1000 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10797 (purL, b2557) -> phosphoribosylformylglycinamide synthetase |
| Group 468 | Genes common to all candidates in group G7686 (aaeA, b3241) -> AaeAB Hydroxylated, Aromatic Carboxylic Acid Efflux Transport System Protein A G7685 (aaeB, b3240) -> AaeAB Hydroxylated, Aromatic Carboxylic Acid Efflux Transport System Protein B G6884 (ydhJ, b1644) -> conserved protein | |||||
| Candidate 0821 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG11954 (sdsR, b4082) -> predicted membrane fusion protein of efflux pump | |
| Candidate 0784 | 0.999 | 0 | 0.000 | 4 | Additional genes in candidate G6885 (ydhK, b1645) -> conserved inner membrane protein |
| Group 469 | Candidate 1126 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10346 (ftsY, b3464) -> SRP receptor EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer |
| Group 470 | Genes common to all candidates in group EG11580 (ybiB, b0800) -> predicted transferase/phosphorylase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase | |||||
| Candidate 0881 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11666 (moaC, b0783) -> molybdopterin biosynthesis protein C | |
| Candidate 0880 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G6242 (ppiD, b0441) -> periplasmic folding helper protein |
| Group 471 | Genes common to all candidates in group EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily EG10452 (hisP, b2306) -> HisP EG10386 (glnH, b0811) -> GlnH | |||||
| Candidate 1015 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate EG10389 (glnQ, b0809) -> GlnQ | |
| Candidate 1014 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate EG11626 (artQ, b0862) -> ArtQ |
| Group 472 | Candidate 0800 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG12423 (tauD, b0368) -> taurine dioxygenase monomer G6217 (tauA, b0365) -> TauA G6218 (tauB, b0366) -> TauB G6219 (tauC, b0367) -> TauC |
| Group 473 | Genes common to all candidates in group EG12882 (gsp, b2988) -> Gsp EG11812 (yjfC, b4186) -> predicted synthetase/amidase EG11165 (ygiC, b3038) -> predicted enzyme | |||||
| Candidate 0872 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG11164 (ygiB, b3037) -> conserved outer membrane protein | |
| Candidate 0871 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate G7849 (yjfL, b4184) -> conserved inner membrane protein |
| Group 474 | Candidate 0839 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11602 (glnE, b3053) -> glutamine synthetase adenylyltransferase [multifunctional] EG11603 (ygiF, b3054) -> predicted adenylate cyclase EG12434 (ygiM, b3055) -> predicted signal transduction protein (SH3 domain) G7590 (rfaE, b3052) -> fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
| Group 475 | Candidate 0888 | 0.999 | 3 | 1.000 | 4 | Genes in candidate EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG11428 (sthA, b3962) -> SthA G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain |
| Group 476 | Genes common to all candidates in group EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer EG12122 (yggI, b2944) -> conserved protein EG10419 (gshB, b2947) -> glutathione synthetase monomer | |||||
| Candidate 1005 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10589 (metK, b2942) -> methionine adenosyltransferase | |
| Candidate 1004 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11336 (endA, b2945) -> DNA-specific endonuclease I |
| Group 477 | Genes common to all candidates in group G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10223 (deoR, b0840) -> DeoR transcriptional repressor | |||||
| Candidate 1067 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer | |
| Candidate 1066 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism |
| Group 478 | Genes common to all candidates in group G7530 (rdgB, b2954) -> RdgB EG11192 (yicC, b3644) -> conserved protein EG10863 (rph, b3643) -> RNase PH monomer | |||||
| Candidate 0907 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit | |
| Candidate 0906 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7531 (yggW, b2955) -> predicted oxidoreductase |
| Group 479 | Candidate 0875 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG11086 (ftsL, b0083) -> essential cell division protein FtsL EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB |
| Group 480 | Candidate 0843 | 0.999 | 3 | 0.250 | 4 | Genes in candidate EG11566 (yaaU, b0045) -> YaaU EG12148 (galP, b2943) -> GalP - galactose MFS transporter EG12369 (ydjE, b1769) -> YdjE MFS transporter G7437 (ygcS, b2771) -> YgcS MFS transporter |
| Group 481 | Genes common to all candidates in group EG20252 (xylF, b3566) -> XylF EG12276 (xylH, b3568) -> XylH EG11074 (xylA, b3565) -> XylA | |||||
| Candidate 0877 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11075 (xylB, b3564) -> xylulokinase | |
| Candidate 0876 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12275 (xylG, b3567) -> XylG |
| Group 482 | Genes common to all candidates in group G7398 (ygaP, b2668) -> predicted inner membrane protein with hydrolase activity EG12295 (yibN, b3611) -> predicted rhodanese-related sulfurtransferase EG10395 (glpE, b3425) -> GlpE | |||||
| Candidate 1010 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10780 (pspE, b1308) -> thiosulfate sulfurtransferase | |
| Candidate 1009 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10937 (secB, b3609) -> SecB |
| Group 483 | Genes common to all candidates in group G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 EG11299 (rng, b3247) -> ribonuclease G (RNAse G) monomer | |||||
| Candidate 0865 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11255 (ybeB, b0637) -> predicted protein | |
| Candidate 0861 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG50001 (rplU, b3186) -> 50S ribosomal subunit protein L21 |
| Group 484 | Candidate 1087 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10164 (crp, b3357) -> CRP transcriptional dual regulator EG12365 (prkB, b3355) -> predicted phosphoribulokinase G7718 (yheT, b3353) -> predicted hydrolase G7719 (yheU, b3354) -> conserved protein |
| Group 485 | Genes common to all candidates in group EG11619 (mfd, b1114) -> transcription-repair coupling factor EG11481 (tatD, b3841 (obsolete)) -> Tat-linked protein quality control EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase | |||||
| Candidate 0966 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase | |
| Candidate 0965 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase |
| Group 486 | Candidate 1073 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10209 (dapF, b3809) -> diaminopimelate epimerase EG11069 (xerC, b3811) -> site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division EG11260 (yifB, b3765) -> predicted ATP-dependent protease EG11676 (hslV, b3932) -> peptidase component of the HslVU protease |
| Group 487 | Candidate 0986 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG10481 (hycH, b2718) -> protein required for maturation of hydrogenase 3 G7414 (hycI, b2717) -> hydrogenase 3 maturation protease |
| Group 488 | Candidate 0769 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7846 (yjfI, b4181) -> conserved protein G7847 (yjfJ, b4182) -> predicted transcriptional regulator effector protein G7848 (yjfK, b4183) -> conserved protein G7849 (yjfL, b4184) -> conserved inner membrane protein |
| Group 489 | Candidate 0909 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10850 (rimI, b4373) -> ribosomal-protein-S18-alanine N-acetyltransferase EG11171 (ygjD, b3064) -> YgjD, target for YeaZ protease EG11757 (yjeE, b4168) -> essential protein with weak ATPase activity G6991 (yeaZ, b1807) -> protease specific for YgjD |
| Group 490 | Genes common to all candidates in group G7496 (mocA, b2877) -> CTP:molybdopterin cytidylyltransferase G7494 (yqeB, b2875) -> conserved protein with NAD(P)-binding Rossman fold G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit | |||||
| Candidate 0794 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G6154 (yagQ, b0283) -> conserved protein | |
| Candidate 0770 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain |
| Group 491 | Candidate 1006 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10417 (grxA, b0849) -> oxidized glutaredoxin 1 EG10937 (secB, b3609) -> SecB EG12294 (grxC, b3610) -> oxidized glutaredoxin 3 EG12295 (yibN, b3611) -> predicted rhodanese-related sulfurtransferase |
| Group 492 | Genes common to all candidates in group G6566 (thiK, b1106) -> thiamin kinase G6565 (ycfM, b1105) -> predicted outer membrane lipoprotein EG12172 (hinT, b1103) -> purine nucleoside phosphoramidase | |||||
| Candidate 0814 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G6564 (ycfL, b1104) -> predicted protein | |
| Candidate 0813 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G6568 (ycfP, b1108) -> conserved protein |
| Group 493 | Candidate 0942 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites EG11547 (rnt, b1652) -> Rnt G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex |
| Group 494 | Candidate 1033 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10334 (fre, b3844) -> FMN reductase EG10845 (rho, b3783) -> transcription termination factor Rho monomer; polarity suppressor EG11031 (trxA, b3781) -> oxidized thioredoxin EG11396 (ubiD, b3843) -> 3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer |
| Group 495 | Candidate 0987 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 G7414 (hycI, b2717) -> hydrogenase 3 maturation protease |
| Group 496 | Genes common to all candidates in group EG12210 (waaF, b3620) -> ADP-heptose:LPS heptosyltransferase II EG11189 (waaC, b3621) -> ADP-heptose:LPS heptosyl transferase I EG10838 (rfaD, b3619) -> ADP-L-glycero-D-mannoheptose-6-epimerase | |||||
| Candidate 0913 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG11341 (waaQ, b3632) -> lipopolysaccharide core heptosyl transferase III | |
| Candidate 0912 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G7590 (rfaE, b3052) -> fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
| Group 497 | Candidate 1042 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10302 (fhuA, b0150) -> FhuA outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 EG10303 (fhuB, b0153) -> FhuB EG10304 (fhuC, b0151) -> FhuC EG10305 (fhuD, b0152) -> FhuD |
| Group 498 | Genes common to all candidates in group G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain G6362 (ybeY, b0659) -> conserved protein involved in translation EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 | |||||
| Candidate 0900 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |
| Candidate 0898 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G6350 (nadD, b0639) -> nicotinate-mononucleotide adenylyltransferase |
| Group 499 | Candidate 0879 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11046 (ugpA, b3452) -> UgpA EG11047 (ugpB, b3453) -> UgpB EG11049 (ugpE, b3451) -> UgpE G6648 (ycjN, b1310) -> YcjN |
| Group 500 | Candidate 0984 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10493 (ilvA, b3772) -> IlvA EG10494 (ilvB, b3671) -> IlvB EG10496 (ilvD, b3771) -> IlvD EG10990 (tdcB, b3117) -> TdcB |
| Group 501 | Genes common to all candidates in group G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase G7103 (wcaB, b2058) -> predicted colanic acid biosynthesis acyl transferase EG12309 (yjtD, b4403) -> predicted rRNA methyltransferase | |||||
| Candidate 0807 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G7326 (iscR, b2531) -> IscR transcriptional dual regulator | |
| Candidate 1084 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG10187 (cysE, b3607) -> serine acetyltransferase monomer |
| Group 502 | Genes common to all candidates in group G7531 (yggW, b2955) -> predicted oxidoreductase EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein | |||||
| Candidate 1062 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10529 (lepA, b2569) -> elongation factor 4 | |
| Candidate 1061 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer |
| Group 503 | Genes common to all candidates in group G6634 (yciV, b1266) -> conserved protein EG11028 (trpE, b1264) -> anthranilate synthase component I EG11025 (trpB, b1261) -> tryptophan synthase, β subunit | |||||
| Candidate 0883 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11027 (trpD, b1263) -> anthranilate synthase component II | |
| Candidate 0882 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12433 (rluB, b1269) -> 23S rRNA pseudouridine 2605 synthase |
| Group 504 | Genes common to all candidates in group EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG10845 (rho, b3783) -> transcription termination factor Rho monomer; polarity suppressor EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway | |||||
| Candidate 1021 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10937 (secB, b3609) -> SecB | |
| Candidate 1097 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit |
| Group 505 | Candidate 0793 | 0.999 | 0 | 0.750 | 4 | Genes in candidate G6215 (yaiP, b0363) -> predicted glucosyltransferase G6529 (pgaC, b1022) -> UDP-N-acetyl-D-glucosamine β-1,6-N-acetyl-D-glucosaminyl transferase G6530 (pgaB, b1023) -> poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase G6531 (pgaA, b1024) -> partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin |
| Group 506 | Genes common to all candidates in group G7532 (yggX, b2962) -> protein that protects iron-sulfur proteins against oxidative damage EG12443 (yggL, b2959) -> predicted protein EG11779 (trmI, b2960) -> tRNA (m7G46) methyltransferase | |||||
| Candidate 0952 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10627 (mutY, b2961) -> adenine glycosylase; G.C --> T.A transversions | |
| Candidate 0830 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7529 (yggU, b2953) -> conserved protein |
| Group 507 | Candidate 1112 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG10065 (argC, b3958) -> N-acetylglutamylphosphate reductase EG11223 (argH, b3960) -> argininosuccinate lyase EG11286 (argE, b3957) -> ArgE |
| Group 508 | Genes common to all candidates in group G7744 (hslO, b3401) -> molecular chaperone Hsp33 EG10688 (pck, b3403) -> phosphoenolpyruvate carboxykinase (ATP) EG10269 (envZ, b3404) -> EnvZ | |||||
| Candidate 1051 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10672 (ompR, b3405) -> OmpR-Phosphorylated | |
| Candidate 1048 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7742 (yrfG, b3399) -> purine nucleotidase |
| Group 509 | Genes common to all candidates in group G7713 (yheM, b3344) -> sulfur transfer protein complex, TusC subunit EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 | |||||
| Candidate 0904 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7712 (yheL, b3343) -> sulfur transfer protein complex, TusB subunit | |
| Candidate 1025 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G |
| Group 510 | Genes common to all candidates in group G7452 (queF, b2794) -> 7-cyano-7-deazaguanine reductase G7451 (syd, b2793) -> SecY-interacting protein G7450 (yqcC, b2792) -> conserved protein | |||||
| Candidate 0771 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7449 (truC, b2791) -> tRNA pseudouridine 65 synthase | |
| Candidate 0803 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG12373 (ygdH, b2795) -> conserved protein |
| Group 511 | Candidate 1105 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10075 (aroC, b2329) -> AroC EG10664 (nupG, b2964) -> NupG nucleoside MFS transporter G7130 (yegT, b2098) -> YegT MFS transporter G7330 (hcaT, b2536) -> HcaT MFS transporter |
| Group 512 | Genes common to all candidates in group G7680 (yhcM, b3232) -> conserved protein with nucleoside triphosphate hydrolase domain G7664 (lptC, b3199) -> LptC G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator | |||||
| Candidate 0836 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11652 (degS, b3235) -> DegS serine endoprotease | |
| Candidate 0835 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism |
| Group 513 | Genes common to all candidates in group G7326 (iscR, b2531) -> IscR transcriptional dual regulator EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase | |||||
| Candidate 0917 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11096 (yajC, b0407) -> YajC | |
| Candidate 0990 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10453 (hisS, b2514) -> histidyl-tRNA synthetase |
| Group 514 | Genes common to all candidates in group G7554 (hybO, b2997) -> hydrogenase 2, small subunit EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11800 (hybB, b2995) -> predicted hydrogenase 2 cytochrome b type component | |||||
| Candidate 0826 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate EG11799 (hybA, b2996) -> hydrogenase 2 4Fe-4S ferredoxin-type component | |
| Candidate 0825 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 |
| Group 515 | Candidate 0866 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG11236 (yahA, b0315) -> phosphodiesterase, c-di-GMP-specific G6608 (ycgG, b1168) -> conserved inner membrane protein G6996 (yoaD, b1815) -> predicted phosphodiesterase G7148 (rtn, b2176) -> putative lipoprotein |
| Group 516 | Candidate 0908 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11013 (topA, b1274) -> DNA topoisomerase I EG11604 (smf, b3286 (obsolete)) -> conserved protein G7699 (yrdD, b3283) -> predicted DNA topoisomerase |
| Group 517 | Candidate 1109 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10066 (argD, b3359) -> ArgD G6942 (astD, b1746) -> aldehyde dehydrogenase G6943 (astA, b1747) -> arginine succinyltransferase G6944 (astC, b1748) -> AstC |
| Group 518 | Genes common to all candidates in group G7546 (glcC, b2980) -> GlcC transcriptional dual regulator EG11962 (lldR, b3604) -> LldR transcriptional repressor EG11088 (pdhR, b0113) -> PdhR transcriptional dual regulator | |||||
| Candidate 1123 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG10024 (aceE, b0114) -> subunit of E1p component of pyruvate dehydrogenase complex | |
| Candidate 1119 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate EG10041 (ampD, b0110) -> N-acetyl-anhydromuramyl-L-alanine-amidase |
| Group 519 | Candidate 0862 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11260 (yifB, b3765) -> predicted ATP-dependent protease EG11821 (amtB, b0451) -> AmtB EG12191 (glnK, b0450) -> uridylyl-[GlnK] G7582 (yqiC, b3042) -> conserved protein |
| Group 520 | Candidate 1032 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG13235 (mngA, b0731) -> MngA G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type |
| Group 521 | Candidate 0945 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10649 (ndh, b1109) -> NADH:ubiquinone oxidoreductase II G6565 (ycfM, b1105) -> predicted outer membrane lipoprotein G6566 (thiK, b1106) -> thiamin kinase G6568 (ycfP, b1108) -> conserved protein |
| Group 522 | Candidate 0932 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10741 (pmbA, b4235) -> protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD EG11410 (yjgA, b4234) -> putative alpha-helix protein G7689 (tldD, b3244) -> protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD G7690 (yhdP, b3246 (obsolete)) -> conserved membrane protein, predicted transporter |
| Group 523 | Candidate 0828 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11794 (rlmM, b2806) -> 23S rRNA 2'-O-ribose C2498 methyltransferase EG12373 (ygdH, b2795) -> conserved protein G7451 (syd, b2793) -> SecY-interacting protein G7452 (queF, b2794) -> 7-cyano-7-deazaguanine reductase |
| Group 524 | Genes common to all candidates in group G7531 (yggW, b2955) -> predicted oxidoreductase G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer | |||||
| Candidate 0899 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 | |
| Candidate 0896 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10920 (rpsU, b3065) -> 30S ribosomal subunit protein S21 |
| Group 525 | Candidate 0938 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10678 (oppF, b1247) -> OppF EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6432 (gsiD, b0832) -> GsiD |
| Group 526 | Candidate 0901 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10917 (rpsR, b4202) -> 30S ribosomal subunit protein S18 EG10967 (trmH, b3651) -> tRNA (Gm18) 2'-O-methyltransferase EG11296 (radA, b4389) -> DNA recombination protein G7845 (rlmB, b4180) -> 23S rRNA 2'-O-ribose G2251 methyltransferase monomer |
| Group 527 | Candidate 0822 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11929 (zur, b4046) -> Zur EG12368 (znuB, b1859) -> ZnuB G7017 (znuA, b1857) -> ZnuA G7018 (znuC, b1858) -> ZnuC |
| Group 528 | Candidate 1075 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG11149 (gcvR, b2479) -> GcvR predicted transcriptional regulator G7310 (yfgO, b2493) -> predicted inner membrane protein G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 529 | Candidate 0946 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10643 (narL, b1221) -> NarL-Phosphorylated transcriptional dual regulator EG11527 (narP, b2193) -> NarP-Phosphorylated transcriptional dual regulator G6546 (csgD, b1040) -> CsgD transcriptional dual regulator G7475 (ygeK, b2855) -> predicted DNA-binding transcriptional regulator |
| Group 530 | Genes common to all candidates in group EG10263 (entE, b0594) -> EntE EG10260 (entB, b0595) -> EntB EG10259 (entA, b0596) -> EntA | |||||
| Candidate 1055 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10261 (entC, b0593) -> isochorismate synthase 1 | |
| Candidate 1054 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10264 (entF, b0586) -> aryl carrier protein / serine activating enzyme |
| Group 531 | Candidate 1024 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10364 (galR, b2837) -> GalR transcriptional dual regulator EG10525 (lacI, b0345) -> LacI transcriptional repressor EG10557 (malI, b1620) -> MalI transcriptional repressor EG10800 (purR, b1658) -> PurR |
| Group 532 | Candidate 0935 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10706 (pgsA, b1912) -> phosphatidylglycerophosphate synthase EG11063 (uvrC, b1913) -> excinuclease ABC, subunit C; repair of UV damage to DNA EG11597 (moaD, b0784) -> MoaD-S G6937 (cho, b1741) -> endonuclease of nucleotide excision repair |
| Group 533 | Candidate 1035 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10328 (folD, b0529) -> FolD EG10508 (ispA, b0421) -> geranyl diphosphate synthase / farnesyl diphosphate synthase EG11072 (xseA, b2509) -> exonuclease VII, large subunit EG11098 (xseB, b0422) -> exonuclease VII, small subunit |
| Group 534 | Genes common to all candidates in group G6962 (ydjK, b1775) -> predicted transporter EG12369 (ydjE, b1769) -> YdjE MFS transporter EG11566 (yaaU, b0045) -> YaaU | |||||
| Candidate 0842 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G6206 (mhpT, b0353) -> MhpT MFS transporter | |
| Candidate 0841 | 0.999 | 3 | 0.000 | 4 | Additional genes in candidate G7437 (ygcS, b2771) -> YgcS MFS transporter |
| Group 535 | Candidate 1069 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10220 (deoB, b4383) -> phosphopentomutase EG10222 (deoD, b4384) -> DeoD EG10945 (serB, b4388) -> phosphoserine phosphatase EG10951 (ytjB, b4387) -> membrane protein |
| Group 536 | Candidate 0980 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10521 (kefC, b0047) -> KefC potassium CPA2 transporter EG11568 (kefF, b0046) -> regulator of KefC-mediated potassium transport EG20110 (kefB, b3350) -> KefB potassium CPA2 transporter G7717 (kefG, b3351) -> protein required for KefB activity |
| Group 537 | Candidate 1030 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase G7642 (yraM, b3147) -> putative glycosylase |
| Group 538 | Candidate 0985 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10548 (lspA, b0027) -> prolipoprotein signal peptidase II EG12097 (yfiH, b2593) -> conserved protein EG12098 (rluD, b2594) -> 23S rRNA pseudouridine synthase |
| Group 539 | Genes common to all candidates in group G7746 (yhgF, b3407) -> predicted transcriptional accessory protein EG10672 (ompR, b3405) -> OmpR-Phosphorylated EG10269 (envZ, b3404) -> EnvZ | |||||
| Candidate 1050 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11578 (greB, b3406) -> transcription elongation factor GreB | |
| Candidate 1049 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7744 (hslO, b3401) -> molecular chaperone Hsp33 |
| Group 540 | Genes common to all candidates in group G6517 (rutG, b1006) -> predicted xanthine/uracil transporter EG12098 (rluD, b2594) -> 23S rRNA pseudouridine synthase EG10548 (lspA, b0027) -> prolipoprotein signal peptidase II | |||||
| Candidate 0977 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase | |
| Candidate 0976 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG12129 (uraA, b2497) -> UraA uracil NCS2 transporter |
| Group 541 | Candidate 1107 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10074 (aroB, b3389) -> 3-dehydroquinate synthase EG10081 (aroK, b3390) -> shikimate kinase I EG10748 (mrcA, b3396) -> peptidoglycan synthetase; penicillin-binding protein 1A EG11653 (cyaY, b3807) -> frataxin, iron-binding and oxidizing protein |
| Group 542 | Genes common to all candidates in group EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10064 (argB, b3959) -> acetylglutamate kinase monomer | |||||
| Candidate 1111 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11203 (yihA, b3865) -> cell division protein; predicted checkpoint GTPase | |
| Candidate 1110 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11268 (fmt, b3288) -> 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase |
| Group 543 | Candidate 0923 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10788 (ptsH, b2415) -> HPr EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12322 (yadI, b0129) -> AgaX |
| Group 544 | Genes common to all candidates in group EG12347 (yecC, b1917) -> predicted transporter subunit: ATP-binding component of ABC superfamily EG11624 (artP, b0864) -> ArtP EG10452 (hisP, b2306) -> HisP | |||||
| Candidate 1012 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG10389 (glnQ, b0809) -> GlnQ | |
| Candidate 0991 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG11626 (artQ, b0862) -> ArtQ |
| Group 545 | Candidate 0817 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG12076 (nikB, b3477) -> NikB EG12079 (nikE, b3480) -> NikE EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF |
| Group 546 | Candidate 0827 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11798 (hofC, b0106) -> protein transport protein HofC G7526 (yggR, b2950) -> predicted transporter G7704 (gspE, b3326) -> putative protein secretion protein for export G7705 (gspF, b3327) -> putative protein secretion protein for export |
| Group 547 | Candidate 0894 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10937 (secB, b3609) -> SecB EG12295 (yibN, b3611) -> predicted rhodanese-related sulfurtransferase EG20091 (gpsA, b3608) -> GpsA G7398 (ygaP, b2668) -> predicted inner membrane protein with hydrolase activity |
| Group 548 | Candidate 0859 | 0.999 | 2 | 1.000 | 4 | Genes in candidate EG11325 (acnA, b1276) -> aconitate hydratase 1 EG12053 (ccmG, b2195) -> CcmG EG12057 (ccmC, b2199) -> CcmC EG12059 (ccmA, b2201) -> CcmA |
| Group 549 | Candidate 1074 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10207 (dapD, b0166) -> tetrahydrodipicolinate succinylase subunit EG10208 (dapE, b2472) -> N-succinyl-L-diaminopimelate desuccinylase subunit EG10570 (map, b0168) -> methionine aminopeptidase EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme |
| Group 550 | Candidate 0974 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10552 (lysS, b2890) -> lysyl tRNA synthetase (LysRSs), constitutive EG10553 (lysU, b4129) -> lysyl-tRNA synthetase EG11211 (poxA, b4155) -> predicted regulator of pyruvate oxidase EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase |
| Group 551 | Candidate 0891 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10965 (gmk, b3648) -> Gmk EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG12606 (fabF, b1095) -> FabF EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP |
| Group 552 | Candidate 0962 | 0.999 | 3 | 1.000 | 4 | Genes in candidate EG10586 (metG, b2114) -> methionyl-tRNA synthetase EG10611 (mrp, b2113) -> putative ATPase EG11418 (dcd, b2065) -> Dcd G7597 (ygjH, b3074) -> putative tRNA synthetase |
| Group 553 | Candidate 0971 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10567 (manX, b1817) -> ManX EG10568 (manY, b1818) -> ManY EG10569 (manZ, b1819) -> ManZ G6998 (yobD, b1820) -> conserved inner membrane protein |
| Group 554 | Candidate 1034 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer G7346 (yfhL, b2562) -> predicted 4Fe-4S cluster-containing protein |
| Group 555 | Candidate 0905 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit EG10965 (gmk, b3648) -> Gmk EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] G7626 (tdcF, b3113) -> predicted L-PSP (mRNA) endoribonuclease |
| Group 556 | Candidate 0934 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10720 (phnK, b4097) -> PhnK EG12040 (yejE, b2179) -> YejE EG12041 (yejF, b2180) -> YejF G6429 (gsiA, b0829) -> GsiA |
| Group 557 | Candidate 1100 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase EG10966 (spoT, b3650) -> guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional] EG12690 (rarA, b0892) -> recombination factor |
| Group 558 | Candidate 0968 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG11198 (glmU, b3730) -> GlmU EG11619 (mfd, b1114) -> transcription-repair coupling factor |
| Group 559 | Candidate 0851 | 0.999 | 4 | 1.000 | 4 | Genes in candidate EG11473 (ubiE, b3833) -> bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase EG11476 (ubiB, b3835) -> 2-octaprenylphenol hydroxylase EG11676 (hslV, b3932) -> peptidase component of the HslVU protease EG11881 (hslU, b3931) -> ATPase component of the HslVU protease |
| Group 560 | Candidate 0797 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG50006 (eutB, b2441) -> ethanolamine ammonia-lyase, α subunit EG50007 (eutC, b2440) -> ethanolamine ammonia-lyase, β subunit G7271 (eutL, b2439) -> predicted structural protein, ethanolamine utilization microcompartment G7281 (eutA, b2451) -> reactivating factor for ethanolamine ammonia-lyase EutBC |
| Group 561 | Candidate 0860 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG11306 (lipA, b0628) -> lipoate synthase monomer EG11645 (ydeJ, b1537) -> conserved protein G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair G7409 (ygaD, b2700) -> conserved protein |
| Group 562 | Candidate 1070 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10220 (deoB, b4383) -> phosphopentomutase EG10221 (deoC, b4381) -> deoxyribose-phosphate aldolase EG12029 (nupX, b2161) -> putative pyrimidine nucleoside transporter EG12032 (yeiM, b2164) -> YeiM NUP transporter |
| Group 563 | Candidate 0902 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10915 (rpsP, b2609) -> 30S ribosomal subunit protein S16 EG11023 (trmD, b2607) -> TrmD EG11153 (rimM, b2608) -> ribosome maturation protein EG12401 (rlmN, b2517) -> 23S rRNA m2A2503 methyltransferase |
| Group 564 | Candidate 1036 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10318 (fldA, b0684) -> oxidized flavodoxin 1 EG10359 (fur, b0683) -> Fur EG11775 (ybfE, b0685) -> LexA-regulated protein EG12197 (seqA, b0687) -> SeqA, negative modulator of initiation of replication |
| Group 565 | Candidate 0989 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10454 (truA, b2318) -> tRNA pseudouridine synthase I EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10874 (rplM, b3231) -> 50S ribosomal subunit protein L13 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 566 | Candidate 1011 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10389 (glnQ, b0809) -> GlnQ EG11624 (artP, b0864) -> ArtP EG12663 (gltL, b0652) -> GltL EG12837 (yhdZ, b3271) -> YhdZ |
| Group 567 | Candidate 1028 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10346 (ftsY, b3464) -> SRP receptor EG12212 (yhhL, b3466) -> conserved inner membrane protein EG12214 (yhhN, b3468) -> conserved inner membrane enzyme |
| Group 568 | Candidate 0798 | 0.999 | 8 | 0.000 | 4 | Genes in candidate EG12475 (yjeM, b4156) -> YjeM APC transporter EG12720 (ygjI, b3078) -> YgjI APC transporter G6466 (ycaM, b0899) -> YcaM predicted APC amino acid transporter G6786 (gadC, b1492) -> GadC GABA APC transporter |
| Group 569 | Candidate 0981 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10520 (waaA, b3633) -> KDO transferase EG11189 (waaC, b3621) -> ADP-heptose:LPS heptosyl transferase I EG11341 (waaQ, b3632) -> lipopolysaccharide core heptosyl transferase III EG12210 (waaF, b3620) -> ADP-heptose:LPS heptosyltransferase II |
| Group 570 | Candidate 1072 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10216 (dedA, b2317) -> conserved inner membrane protein EG11281 (mutL, b4170) -> MutL EG11824 (yghB, b3009) -> conserved inner membrane protein G7609 (yqjA, b3095) -> conserved inner membrane protein |
| Group 571 | Candidate 0903 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11179 (rimP, b3170) -> ribosome maturation protein G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 572 | Candidate 1096 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10126 (btuB, btuB) -> outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 EG10155 (cirA, b2155) -> outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine EG10293 (fepA, b0584) -> FepA, outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D G7078 (yoeE, b1998) -> hypothetical protein |
| Group 573 | Candidate 1108 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10073 (aroA, b0908) -> 3-phosphoshikimate-1-carboxyvinyltransferase EG10669 (ompA, b0957) -> outer membrane protein 3a (II*;G;d) EG10946 (serC, b0907) -> SerC EG11143 (ubiG, b2232) -> UbiG |
| Group 574 | Candidate 1127 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10002 (modB, b0764) -> ModB EG10197 (cysU, b2424) -> CysU EG10198 (cysW, b2423) -> CysW EG11573 (thiP, b0067) -> SfuB |
| Group 575 | Candidate 0973 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10555 (malF, b4033) -> MalF EG10556 (malG, b4032) -> MalG G6649 (ycjO, b1311) -> YcjO G6650 (ycjP, b1312) -> YcjP |
| Group 576 | Candidate 0869 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein EG12715 (dxr, b0173) -> Dxr G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase |
| Group 577 | Candidate 0785 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G6751 (ydcS, b1440) -> YdcS G6752 (ydcT, b1441) -> YdcT G6754 (ydcV, b1443) -> YdcV G6755 (ydcW, b1444) -> γ-aminobutyraldehyde dehydrogenase |
| Group 578 | Candidate 0994 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG10438 (hfq, b4172) -> RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins EG10533 (lexA, b4043) -> LexA EG10595 (miaA, b4171) -> tRNA(i6A37) synthase |
| Group 579 | Candidate 0961 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10588 (metJ, b3938) -> MetJ transcriptional repressor EG10763 (priA, b3935) -> primosome factor N' EG10889 (rpmE, b3936) -> 50S ribosomal subunit protein L31 EG11529 (ftsN, b3933) -> essential cell division protein FtsN |
| Group 580 | Candidate 0853 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11457 (wzyE, b3793) -> predicted Wzy protein involved in ECA polysaccharide chain elongation EG11458 (rffM, b3794) -> UDP-N-acetyl-D-mannosaminuronic acid transferase EG11486 (wzxE, b3792) -> lipid III flippase G7800 (rffT, b4404 (obsolete)) -> 4-acetamido-4,6-dideoxy-D-galactose transferase |
| Group 581 | Candidate 0772 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7448 (yqcA, b2790) -> predicted flavoprotein G7449 (truC, b2791) -> tRNA pseudouridine 65 synthase G7450 (yqcC, b2792) -> conserved protein G7451 (syd, b2793) -> SecY-interacting protein |
| Group 582 | Candidate 0970 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10571 (chpR, b2783) -> MazE antitoxin of the MazF-MazE toxin-antitoxin system EG11249 (chpA, b2782) -> MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity EG11250 (chpS, b4224) -> ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system EG12096 (chpB, b4225) -> ChpB toxin of the ChpB-ChpS toxin-antitoxin system |
| Group 583 | Candidate 0863 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11260 (yifB, b3765) -> predicted ATP-dependent protease EG11440 (def, b3287) -> peptide deformylase EG11604 (smf, b3286 (obsolete)) -> conserved protein EG12163 (rsmB, b3289) -> 16S rRNA m5C967 methyltransferase |
| Group 584 | Candidate 0967 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase EG11247 (rlmD, b2785) -> 23S rRNA m5U1939 methyltransferase EG11367 (barA, barA) -> BarA sensory histidine kinase - phosphorylated |
| Group 585 | Candidate 0818 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG12075 (nikA, b3476) -> NikA EG12076 (nikB, b3477) -> NikB EG12077 (nikC, b3478) -> NikC EG12079 (nikE, b3480) -> NikE |
| Group 586 | Candidate 0933 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10721 (phnL, b4096) -> PhnL G6573 (lolC, b1116) -> LolC G6574 (lolD, b1117) -> LolD G6575 (lolE, b1118) -> LolE |
| Group 587 | Candidate 0787 | 0.999 | 0 | 0.500 | 4 | Genes in candidate G6653 (ycjS, b1315) -> predicted oxidoreductase, NADH-binding G6868 (ydgJ, b1624) -> putative galactose 1-dehydrogenase G7757 (yhhX, b3440) -> predicted galactose 1-dehydrogenase G7901 (yjhC, b4280) -> KpLE2 phage-like element; predicted oxidoreductase |
| Group 588 | Candidate 0995 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10435 (hflC, b4175) -> regulator of FtsH protease EG10436 (hflK, b4174) -> regulator of FtsH protease EG10595 (miaA, b4171) -> tRNA(i6A37) synthase EG10945 (serB, b4388) -> phosphoserine phosphatase |
| Group 589 | Candidate 0939 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG12038 (yejB, b2178) -> YejB EG12040 (yejE, b2179) -> YejE |
| Group 590 | Candidate 0921 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10791 (purC, b2476) -> PurC EG10794 (purF, b2312) -> PurF EG10798 (purM, b2499) -> PurM EG10799 (purN, b2500) -> phosphoribosylglycinamide formyltransferase 1 |
| Group 591 | Candidate 0895 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10937 (secB, b3609) -> SecB EG11888 (yibK, b3606) -> predicted rRNA methylase EG12294 (grxC, b3610) -> oxidized glutaredoxin 3 G7747 (gntX, b3413) -> protein involved in utilization of DNA as a carbon source |
| Group 592 | Candidate 0930 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10760 (prc, b1830) -> tail-specific protease G7005 (yebR, b1832) -> free methionine-(R)-sulfoxide reductase G7006 (yebS, b1833) -> conserved inner membrane protein G7007 (yebT, b1834) -> conserved protein |
| Group 593 | Candidate 0864 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11257 (adrA, b0385) -> predicted diguanylate cyclase G6532 (ycdT, b1025) -> diguanylate cyclase G6784 (dosC, b1490) -> diguanylate cyclase G7049 (yedQ, b1956) -> predicted diguanylate cyclase |
| Group 594 | Candidate 1076 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG10950 (slt, b4392) -> soluble lytic murein transglycosylase G6140 (yagE, b0268) -> CP4-6 prophage; predicted lyase/synthase G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 595 | Candidate 0988 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10463 (degP, b0161) -> DegP EG11652 (degS, b3235) -> DegS serine endoprotease G7657 (yrbA, b3190) -> predicted DNA-binding transcriptional regulator G7682 (degQ, b3234) -> serine endoprotease, periplasmic |
| Group 596 | Candidate 1101 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10085 (ascB, b2716) -> 6-phospho-β-glucosidase; cryptic EG10086 (ascF, b2715) -> AscF EG10114 (bglB, bglB) -> 6-phospho-β-glucosidase B; cryptic EG10115 (bglF, bglF) -> BglF |
| Group 597 | Candidate 0886 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11020 (trkG, b1363) -> TrkG potassium ion Trk Transporter EG11021 (trkH, b3849) -> TrkH potassium ion Trk Transporter EG11484 (yigZ, b3848) -> predicted elongation factor EG11485 (hemG, b3850) -> HemG |
| Group 598 | Candidate 1027 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase EG12097 (yfiH, b2593) -> conserved protein |
| Group 599 | Candidate 1071 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10219 (deoA, b4382) -> DeoA EG10220 (deoB, b4383) -> phosphopentomutase G7732 (yhfW, b3380) -> predicted mutase G85 (xapA, b2407) -> XapA |
| Group 600 | Candidate 0972 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10555 (malF, b4033) -> MalF EG10558 (malK, b4035) -> MalK EG11048 (ugpC, b3450) -> UgpC G6656 (ycjV, b1318) -> predicted sugar transporter subunit: ATP-binding component of ABC superfamily |
| Group 601 | Candidate 0824 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11865 (rhaM, b3901) -> L-rhamnose mutarotase EG11866 (rhaD, b3902) -> rhamnulose-1-phosphate aldolase monomer EG11867 (rhaA, b3903) -> L-rhamnose isomerase EG11868 (rhaB, b3904) -> L-rhamnulose kinase |
| Group 602 | Candidate 1039 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10317 (fis, b3261) -> Fis EG10387 (glnL, b3869) -> NtrB EG10437 (hflX, b4173) -> GTPase associated with the 50S subunit of the ribosome EG11019 (trkA, b3290) -> NAD-binding component of TrK potassium transporter |
| Group 603 | Candidate 1053 | 0.999 | 6 | 0.500 | 4 | Genes in candidate EG10260 (entB, b0595) -> EntB EG11135 (pncA, b1768) -> pyrazinamidase / nicotinamidase EG12378 (yecD, b1867) -> predicted hydrolase G6522 (rutB, b1011) -> peroxyureidoacrylate / ureidoacrylate amido hydrolase |
| Group 604 | Candidate 0789 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G6486 (ycbW, b0946) -> predicted protein G6487 (ycbX, b0947) -> protein involved in base analog detoxification G6488 (rlmL, b0948) -> 23S rRNA m2G2445 methyltransferase G6489 (uup, b0949) -> ATP-binding protein with possible role in replication |
| Group 605 | Candidate 0969 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11247 (rlmD, b2785) -> 23S rRNA m5U1939 methyltransferase EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein |
| Group 606 | Candidate 1029 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG10343 (rsmD, b3465) -> 16S rRNA m2G966 methyltransferase EG10346 (ftsY, b3464) -> SRP receptor EG10786 (ptrA, b2821) -> protease III EG11744 (pqqL, b1494) -> putative zinc peptidase |
| Group 607 | Candidate 0978 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10538 (livH, b3457) -> LivH EG10539 (livJ, b3460) -> LivJ EG10540 (livK, b3458) -> LivK, leucine binding protein of the high-affinity branched-chain amino acid transport system EG12211 (yhhK, b3459) -> conserved protein |
| Group 608 | Candidate 0811 | 0.999 | 1 | 0.250 | 4 | Genes in candidate EG12235 (arsR, b3501) -> ArsR EG12236 (arsB, b3502) -> ArsB G7374 (ypjM_3, b2639) -> CP4-57 prophage; predicted inner membrane protein G7375 (ypjM_2, b2640) -> CP4-57 prophage; predicted protein |
| Group 609 | Candidate 0940 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG10678 (oppF, b1247) -> OppF G6432 (gsiD, b0832) -> GsiD |
| Group 610 | Candidate 1031 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer G7416 (ygbI, b2735) -> predicted DNA-binding transcriptional regulator, DEOR-type G7630 (agaR, b3131) -> AgaR transcriptional repressor G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism |
| Group 611 | Candidate 1001 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10420 (guaA, b2507) -> GMP synthetase EG10421 (guaB, b2508) -> GuaB G7357 (yfjF, b2618) -> predicted protein G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair |
| Group 612 | Candidate 0778 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7204 (yfcP, b2333) -> predicted fimbrial-like adhesin protein G7207 (yfcS, b2336) -> predicted periplasmic pilus chaperone G7208 (yfcT, b2337) -> fimbrial usher protein, C-terminal fragment G7209 (yfcU, b2338) -> fimbrial usher protein, N-terminal fragment |
| Group 613 | Candidate 1056 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10258 (eno, b2779) -> Eno EG10703 (pgk, b2926) -> phosphoglycerate kinase EG11015 (tpiA, b3919) -> triose phosphate isomerase monomer EG12296 (gpmM, b3612) -> phosphoglycerate mutase, cofactor independent |
| Group 614 | Candidate 1060 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10256 (eda, b1850) -> Eda EG10257 (edd, b1851) -> phosphogluconate dehydratase EG11221 (zwf, b1852) -> glucose 6-phosphate-1-dehydrogenase EG12860 (yebK, b1853) -> predicted DNA-binding transcriptional regulator |
| Group 615 | Candidate 0929 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG10994 (tdk, b1238) -> thymidine kinase / deoxyuridine kinase EG11332 (upp, b2498) -> Upp G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 616 | Candidate 0795 | 0.999 | 0 | 0.000 | 4 | Genes in candidate G6130 (insN-1, b0255) -> CP4-6 prophage; partial regulator of insertion element IS911A G6132 (insO-1, b0257) -> CP4-6 prophage; partial transposase of insertion element IS911A, interrupted by insertion of IS30 element G7904 (insN-2, b4283) -> KpLE2 phage-like element; partial regulator of insertion element IS911B (interrupted) G7906 (insO-2, b4285) -> KpLE2 phage-like element; partial transposase |
| Group 617 | Candidate 0983 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10508 (ispA, b0421) -> geranyl diphosphate synthase / farnesyl diphosphate synthase EG10666 (nusB, b0416) -> transcription antitermination protein NusB EG11098 (xseB, b0422) -> exonuclease VII, small subunit EG11322 (ribE, b0415) -> RibE |
| Group 618 | Candidate 0997 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10427 (hemA, b1210) -> HemA EG10761 (prfA, b1211) -> peptide chain release factor RF1 EG12181 (grxD, b1654) -> glutaredoxin 4 EG12424 (prmC, b1212) -> protein-(glutamine-N5) methyltransferase |
| Group 619 | Candidate 0924 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG11404 (ychF, b1203) -> putative GTP-binding protein EG11533 (ychH, b1205) -> stress-induced protein |
| Group 620 | Candidate 0786 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G6727 (ynbA, b1408) -> putative diacylglycerol cholinephosphotransferase G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase G6729 (ynbC, b1410) -> predicted hydrolase G6730 (ynbD, b1411) -> predicted phosphatase, inner membrane protein |
| Group 621 | Candidate 1016 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10385 (glnG, b3868) -> NtrC transcriptional dual regulator EG10387 (glnL, b3869) -> NtrB EG10482 (zraR, b4004) -> ZraR-Phosphorylated transcriptional activator G7488 (ygeV, b2869) -> putative transcriptional regulator |
| Group 622 | Candidate 1023 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10365 (galS, b2151) -> GalS transcriptional dual regulator EG10592 (mglA, b2149) -> MglA EG10593 (mglB, b2150) -> MglB EG10594 (mglC, b2148) -> MglC |
| Group 623 | Candidate 1113 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10063 (argA, b2818) -> ArgA EG10064 (argB, b3959) -> acetylglutamate kinase monomer EG11197 (yidC, b3705) -> inner-membrane protein insertion factor EG11203 (yihA, b3865) -> cell division protein; predicted checkpoint GTPase |
| Group 624 | Candidate 0953 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10627 (mutY, b2961) -> adenine glycosylase; G.C --> T.A transversions EG11779 (trmI, b2960) -> tRNA (m7G46) methyltransferase EG12443 (yggL, b2959) -> predicted protein EG12705 (yggN, b2958) -> predicted protein |
| Group 625 | Candidate 0889 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10977 (sspA, b3229) -> stringent starvation protein A EG11652 (degS, b3235) -> DegS serine endoprotease G6379 (ybgI, b0710) -> conserved metal-binding protein G7682 (degQ, b3234) -> serine endoprotease, periplasmic |
| Group 626 | Candidate 0920 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10805 (pyrB, b4245) -> aspartate carbamoyltransferase, PyrB subunit G6281 (allB, b0512) -> allantoinase monomer G7492 (hyuA, b2873) -> phenylhydantoinase monomer G7925 (iadA, b4328) -> IadA |
| Group 627 | Candidate 0926 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10768 (proB, b0242) -> ProB EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 G7459 (rppH, b2830) -> RNA pyrophosphohydrolase G7656 (obgE, b3183) -> GTPase involved in chromosome partitioning and ribosome assembly |
| Group 628 | Candidate 0780 | 0.999 | 0 | 0.500 | 4 | Genes in candidate G7167 (arnC, b2254) -> undecaprenyl phosphate-L-Ara4FN transferase G7169 (arnD, b2256) -> conserved protein G7170 (arnT, b2257) -> 4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase G7220 (yfdH, b2351) -> CPS-53 (KpLE1) prophage; bactoprenyl glucosyl transferase |
| Group 629 | Candidate 1091 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10805 (pyrB, b4245) -> aspartate carbamoyltransferase, PyrB subunit G6281 (allB, b0512) -> allantoinase monomer |
| Group 630 | Candidate 0975 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10552 (lysS, b2890) -> lysyl tRNA synthetase (LysRSs), constitutive EG10553 (lysU, b4129) -> lysyl-tRNA synthetase EG10830 (recJ, b2892) -> RecJ EG11070 (dsbC, b2893) -> DsbCoxidized |
| Group 631 | Candidate 0885 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11022 (trmA, b3965) -> tRNA m5U54 methyltransferase EG11204 (murI, b3967) -> MurI EG11394 (fabR, b3963) -> FabR transcriptional repressor EG11395 (yijD, b3964) -> conserved inner membrane protein |
| Group 632 | Candidate 1118 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10047 (apaG, b0050) -> hypothetical protein EG10048 (apaH, b0049) -> diadenosine tetraphosphatase EG10326 (folA, b0048) -> dihydrofolate reductase EG11570 (djlA, b0055) -> chaperone with DnaK |
| Group 633 | Candidate 0892 | 0.999 | 0 | 0.000 | 4 | Genes in candidate EG10958 (soxS, b4062) -> SoxS transcriptional dual regulator EG11366 (rob, b4396) -> Rob transcriptional activator EG11434 (marA, b1531) -> MarA transcriptional dual regulator G6170 (ykgA, b0300) -> predicted DNA-binding transcriptional regulator |
| Group 634 | Candidate 0954 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10626 (mutT, b0099) -> dGTP pyrophosphohydrolase EG10936 (secA, b0098) -> SecA EG12352 (ppiC, b3775) -> peptidyl-prolyl cis-trans isomerase C (rotamase C) G6954 (nudG, b1759) -> pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase |
| Group 635 | Candidate 1120 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10036 (puuC, b1300) -> γ-glutamyl-γ-aminobutyraldehyde dehydrogenase EG10110 (betB, betB) -> BetB G6755 (ydcW, b1444) -> γ-aminobutyraldehyde dehydrogenase G7961 (feaB, b1385) -> FeaB |
| Group 636 | Candidate 0963 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10582 (metB, b3939) -> MetB EG10585 (metF, b3941) -> MetF EG10588 (metJ, b3938) -> MetJ transcriptional repressor EG10590 (metL, b3940) -> MetL |
| Group 637 | Candidate 0854 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11451 (rffE, b3786) -> UDP-N-acetylglucosamine-2-epimerase EG11452 (rffD, b3787) -> UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase EG11455 (rffC, b3790) -> dTDP-fucosamine acetyltransferase EG11456 (rffA, b3791) -> dTDP-4-oxo-6-deoxy-D-glucose transaminase |
| Group 638 | Candidate 0916 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10818 (rbsK, b3752) -> ribokinase EG11082 (rihC, b0030) -> ribonucleoside hydrolase 3 EG12030 (rihB, b2162) -> ribonucleoside hydrolase 2 (pyrimidine-specific) G6358 (rihA, b0651) -> ribonucleoside hydrolase 1 (pyrimidine-specific) |
| Group 639 | Candidate 0776 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7271 (eutL, b2439) -> predicted structural protein, ethanolamine utilization microcompartment G7286 (eutN, b2456) -> predicted carboxysome structural protein G7287 (eutM, b2457) -> predicted structural protein, ethanolamine utilization microcompartment G7291 (eutP, b2461) -> conserved protein with nucleoside triphosphate hydrolase domain |
| Group 640 | Candidate 0823 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG11908 (frwC, b3949) -> FrwC G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component G7990 (fruB, b2169) -> FruB |
| Group 641 | Candidate 1103 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10077 (aroE, b3281) -> shikimate dehydrogenase EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10937 (secB, b3609) -> SecB EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA |
| Group 642 | Candidate 0918 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer EG11095 (acpH, b0404) -> acyl carrier protein phosphodiesterase EG11096 (yajC, b0407) -> YajC |
| Group 643 | Candidate 0837 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11643 (ydeH, b1535) -> diguanylate cyclase G6532 (ycdT, b1025) -> diguanylate cyclase G6784 (dosC, b1490) -> diguanylate cyclase G6971 (yeaI, b1785) -> predicted diguanylate cyclase |
| Group 644 | Candidate 0845 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11530 (fadD, b1805) -> FadD EG11890 (slp, b3506) -> starvation lipoprotein G6990 (yeaY, b1806) -> predicted lipoprotein G6991 (yeaZ, b1807) -> protease specific for YgjD |
| Group 645 | Candidate 0893 | 0.999 | 2 | 1.000 | 4 | Genes in candidate EG10944 (serA, b2913) -> SerA EG12272 (ghrB, b3553) -> GhrB G0-9461 (pdxB, b2320) -> erythronate-4-phosphate dehydrogenase G592 (ldhA, b1380) -> D-lactate dehydrogenase |
| Group 646 | Candidate 0955 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10625 (mutS, b2733) -> MutS EG10823 (recA, b2699) -> DNA strand exchange and recombination protein with protease and nuclease activity EG12080 (recX, b2698) -> inhibitor of RecA G7409 (ygaD, b2700) -> conserved protein |
| Group 647 | Candidate 1124 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10829 (recG, b3652) -> RecG DNA helicase EG11190 (coaD, b3634) -> pantetheine-phosphate adenylyltransferase monomer EG11192 (yicC, b3644) -> conserved protein |
| Group 648 | Candidate 1007 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10414 (gpt, b0238) -> Gpt EG10695 (pepD, b0237) -> PepD EG11091 (frsA, b0239) -> fermentation/respiration switch protein EG11092 (crl, b0240) -> Crl transcriptional regulator |
| Group 649 | Candidate 0873 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG11160 (mscS, b2924) -> MscS G6255 (kefA, b0465) -> KefA G6666 (ynaI, b1330) -> conserved inner membrane protein G7840 (yjeP, b4159) -> predicted mechanosensitive channel |
| Group 650 | Candidate 1013 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10386 (glnH, b0811) -> GlnH EG11626 (artQ, b0862) -> ArtQ EG11627 (artM, b0861) -> ArtM G7037 (yecS, b1918) -> predicted transporter subunit: membrane component of ABC superfamily |
| Group 651 | Candidate 0846 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11528 (fabI, b1288) -> enoyl-[acyl-carrier-protein] reductase EG12037 (yejA, b2177) -> YejA EG12038 (yejB, b2178) -> YejB EG12040 (yejE, b2179) -> YejE |
| Group 652 | Candidate 0937 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG10694 (pepA, b4260) -> aminopeptidase A/I EG12310 (pepB, b2523) -> aminopeptidase B G7888 (lptF, b4261) -> LptF G7889 (lptG, b4262) -> LptG |
| Group 653 | Candidate 1043 | 0.999 | 1 | 0.000 | 4 | Genes in candidate EG10301 (fhlA, b2731) -> FhlA transcriptional activator EG12108 (norR, b2709) -> NorR transcriptional dual regulator EG12344 (pspF, b1303) -> PspF transcriptional dual regulator G7308 (hyfR, b2491) -> HyfR transcriptional activator |
| Group 654 | Candidate 1098 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG11332 (upp, b2498) -> Upp G7698 (rimN, b3282) -> protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA |
| Group 655 | Candidate 0801 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG12414 (gatA, b2094) -> GatA EG12415 (gatB, b2093) -> GatB EG12416 (gatC, b2092) -> GatC EG12556 (sgcC, b4304) -> SgcC |
| Group 656 | Candidate 1020 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10381 (glgX, b3431) -> glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase EG10561 (malQ, b3416) -> amylomaltase G6647 (ycjM, b1309) -> predicted glucosyltransferase |
| Group 657 | Candidate 0979 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10531 (leuO, b0076) -> LeuO transcriptional dual activator EG11594 (ybeF, b0629) -> predicted DNA-binding transcriptional regulator, LYSR-type EG11721 (yidZ, b3711) -> putative transcriptional regulator LysR-type G6332 (ybdO, b0603) -> predicted DNA-binding transcriptional regulator LYSR-type |
| Group 658 | Candidate 0956 | 0.999 | 1 | 0.250 | 4 | Genes in candidate EG10615 (mtlA, b3599) -> MtlA EG10616 (mtlD, b3600) -> mannitol-1-phosphate 5-dehydrogenase EG11792 (cmtA, b2933) -> CmtA G7990 (fruB, b2169) -> FruB |
| Group 659 | Candidate 1129 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10001 (alr, b4053) -> alanine racemase 1, PLP-binding, biosynthetic EG10247 (acpS, b2563) -> AcpS EG11408 (dadX, b1190) -> DadX EG11758 (yjeF, b4167) -> predicted carbohydrate kinase |
| Group 660 | Candidate 1003 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10419 (gshB, b2947) -> glutathione synthetase monomer EG12366 (rsmE, b2946) -> 16S rRNA m3U1498 methyltransferase monomer G7524 (yqgE, b2948) -> predicted protein G7525 (yqgF, b2949) -> predicted Holliday junction resolvase |
| Group 661 | Genes common to all candidates in group G7630 (agaR, b3131) -> AgaR transcriptional repressor EG10974 (srlR, b2707) -> GutR transcriptional repressor EG10382 (glmS, b3729) -> GlmS | |||||
| Candidate 1019 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate EG11198 (glmU, b3730) -> GlmU | |
| Candidate 1018 | 0.999 | 0 | 0.250 | 4 | Additional genes in candidate G8207 (gatR_1, b2087) -> negative DNA-binding transcriptional regulator of galactitol metabolism |
| Group 662 | Candidate 1099 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10097 (aspS, b1866) -> aspartyl-tRNA synthetase EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair EG11137 (yebC, b1864) -> conserved protein EG11138 (nudB, b1865) -> dihydroneopterin triphosphate pyrophosphohydrolase |
| Group 663 | Candidate 1065 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10236 (dnaB, b4052) -> DnaB EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10870 (rplI, b4203) -> 50S ribosomal subunit protein L9 EG10905 (rpsF, b4200) -> 30S ribosomal subunit protein S6 |
| Group 664 | Candidate 0998 | 0.999 | 1 | 1.000 | 4 | Genes in candidate EG10427 (hemA, b1210) -> HemA EG10428 (hemB, b0369) -> porphobilinogen synthase EG10429 (hemC, b3805) -> hydroxymethylbilane synthase EG10432 (hemL, b0154) -> glutamate-1-semialdehyde aminotransferase |
| Group 665 | Candidate 0774 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G7284 (eutJ, b2454) -> predicted chaperonin, ethanolamine utilization protein G7285 (eutE, b2455) -> predicted aldehyde dehydrogenase, ethanolamine utilization protein G7286 (eutN, b2456) -> predicted carboxysome structural protein G7287 (eutM, b2457) -> predicted structural protein, ethanolamine utilization microcompartment |
| Group 666 | Genes common to all candidates in group EG12303 (ycfH, b1100) -> predicted metallodependent hydrolase EG12302 (tmk, b1098) -> dTMP kinase EG11619 (mfd, b1114) -> transcription-repair coupling factor | |||||
| Candidate 0850 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11481 (tatD, b3841 (obsolete)) -> Tat-linked protein quality control | |
| Candidate 0848 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11500 (holB, b1099) -> DNA polymerase III, δ prime subunit |
| Group 667 | Candidate 1088 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10159 (clpX, b0438) -> ClpX EG10542 (lon, b0439) -> Lon EG11003 (tig, b0436) -> trigger factor; a molecular chaperone involved in cell division G6243 (ybaV, b0442) -> conserved protein |
| Group 668 | Candidate 0781 | 0.999 | 0 | 1.000 | 4 | Genes in candidate G6949 (ynjB, b1754) -> conserved protein G6950 (ynjC, b1755) -> YnjC G6951 (ynjD, b1756) -> YnjD G6953 (ynjF, b1758) -> predicted phosphatidyl transferase, inner membrane protein |
| Group 669 | Candidate 1092 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10134 (carA, b0032) -> CarA EG10135 (carB, b0033) -> CarB EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG12794 (yhbY, b3180) -> predicted RNA-binding protein |
| Group 670 | Candidate 1121 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG10035 (aldA, b1415) -> AldA EG11329 (gabD, b2661) -> GabD G6708 (paaZ, b1387) -> oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase G6811 (sad, b1525) -> Sad |
| Group 671 | Genes common to all candidates in group EG12766 (agaA, b3135) -> predicted truncated N-acetylgalactosamine-6-phosphate deacetylase EG11109 (mngR, b0730) -> MngR EG10632 (nagA, b0677) -> NagA | |||||
| Candidate 0949 | 0.999 | 0 | 0.500 | 4 | Additional genes in candidate G7133 (yegW, b2101) -> predicted DNA-binding transcriptional regulator | |
| Candidate 0950 | 0.999 | 0 | 0.750 | 4 | Additional genes in candidate EG10633 (nagB, b0678) -> NagB |
| Group 672 | Genes common to all candidates in group G7200 (yfcL, b2325) -> predicted protein EG12449 (prmB, b2330) -> N5-glutamine methyltransferase EG10075 (aroC, b2329) -> AroC | |||||
| Candidate 1106 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10454 (truA, b2318) -> tRNA pseudouridine synthase I | |
| Candidate 1104 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7201 (yfcM, b2326) -> putative transporting ATPase |
| Group 673 | Candidate 0922 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10791 (purC, b2476) -> PurC EG10793 (purE, b0523) -> PurE EG10795 (purH, b4006) -> AICAR transformylase / IMP cyclohydrolase EG10796 (purK, b0522) -> N5-carboxyaminoimidazole ribonucleotide synthetase monomer |
| Group 674 | Genes common to all candidates in group G7292 (eutS, b2462) -> predicted structural protein, ethanolamine utilization microcompartment G7291 (eutP, b2461) -> conserved protein with nucleoside triphosphate hydrolase domain G7287 (eutM, b2457) -> predicted structural protein, ethanolamine utilization microcompartment | |||||
| Candidate 0775 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7271 (eutL, b2439) -> predicted structural protein, ethanolamine utilization microcompartment | |
| Candidate 0773 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate G7290 (eutQ, b2460) -> conserved protein |
| Group 675 | Candidate 0870 | 0.999 | 0 | 0.750 | 4 | Genes in candidate EG11171 (ygjD, b3064) -> YgjD, target for YeaZ protease EG11673 (folB, b3058) -> FolB EG11674 (ygiH, b3059) -> conserved inner membrane protein G7195 (folX, b2303) -> dihydroneopterin triphosphate 2'-epimerase monomer |
| Group 676 | Candidate 0919 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10808 (pyrE, b3642) -> PyrE EG10891 (rpmG, b3636) -> 50S ribosomal subunit protein L33 EG10899 (rpoZ, b3649) -> RNA polymerase, ω subunit EG11192 (yicC, b3644) -> conserved protein |
| Group 677 | Candidate 0804 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG12371 (nlpI, b3163) -> lipoprotein involved in cell division G7651 (yhbT, b3157) -> predicted lipid carrier protein G7652 (yhbU, b3158) -> predicted peptidase (collagenase-like) G7653 (yhbV, b3159) -> predicted protease |
| Group 678 | Genes common to all candidates in group G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex | |||||
| Candidate 0783 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate G6912 (ydiI, b1686) -> esterase | |
| Candidate 0782 | 0.999 | 1 | 1.000 | 4 | Additional genes in candidate G7334 (hcaC, b2540) -> 3-phenylpropionate dioxygenase, predicted ferredoxin subunit |
| Group 679 | Candidate 0852 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG11473 (ubiE, b3833) -> bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase EG11474 (yigP, b3834) -> conserved protein EG11476 (ubiB, b3835) -> 2-octaprenylphenol hydroxylase EG11651 (yafE, b0210) -> predicted S-adenosylmethionine-dependent methyltransferase |
| Group 680 | Candidate 0914 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10831 (recN, b2616) -> protein used in recombination and DNA repair EG10952 (smpA, b2617) -> SmpA G7357 (yfjF, b2618) -> predicted protein G7358 (yfjG, b2619) -> toxin of a putative toxin-antitoxin pair |
| Group 681 | Candidate 1125 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10329 (mutM, b3635) -> formamidopyrimidine DNA glycosylase EG11473 (ubiE, b3833) -> bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase EG11476 (ubiB, b3835) -> 2-octaprenylphenol hydroxylase |
| Group 682 | Genes common to all candidates in group G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB EG10625 (mutS, b2733) -> MutS EG10595 (miaA, b4171) -> tRNA(i6A37) synthase | |||||
| Candidate 0959 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10823 (recA, b2699) -> DNA strand exchange and recombination protein with protease and nuclease activity | |
| Candidate 0958 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11281 (mutL, b4170) -> MutL |
| Group 683 | Genes common to all candidates in group EG11311 (dusB, b3260) -> tRNA dihydrouridine synthase EG10795 (purH, b4006) -> AICAR transformylase / IMP cyclohydrolase EG10317 (fis, b3261) -> Fis | |||||
| Candidate 1038 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10792 (purD, b4005) -> phosphoribosylamine-glycine ligase | |
| Candidate 1037 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG11497 (prmA, b3259) -> methyltransferase for 50S ribosomal subunit protein L11 |
| Group 684 | Candidate 0964 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10579 (menD, b2264) -> MenD EG11368 (menB, b2262) -> MenB EG11880 (menA, b3930) -> 1,4-dihydroxy-2-naphthoate octaprenyltransferase EG12362 (menF, b2265) -> MenF |
| Group 685 | Candidate 0858 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG11368 (menB, b2262) -> MenB EG11557 (caiD, b0036) -> crotonobetainyl-CoA hydratase G6714 (paaF, b1393) -> predicted 2,3-dehydroadipyl-CoA hydratase G7516 (scpB, b2919) -> ScpB |
| Group 686 | Candidate 0832 | 0.999 | 2 | 0.500 | 4 | Genes in candidate EG11736 (gmhB, b0200) -> D,D-heptose 1,7-bisphosphate phosphatase EG12780 (diaA, b3149) -> DnaA initiator-associating factor for replication initiation G6106 (lpcA, b0222) -> D-sedoheptulose 7-phosphate isomerase G7590 (rfaE, b3052) -> fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase |
| Group 687 | Candidate 0840 | 0.999 | 0 | 0.250 | 4 | Genes in candidate EG11568 (kefF, b0046) -> regulator of KefC-mediated potassium transport EG12656 (mdaB, b3028) -> NADPH quinone reductase monomer EG12702 (ycaK, b0901) -> conserved protein G7717 (kefG, b3351) -> protein required for KefB activity |
| Group 688 | Candidate 0993 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG10440 (ihfA, b1712) -> integration host factor (IHF), α subunit EG10441 (ihfB, b0912) -> integration host factor (IHF), β subunit EG10466 (hupA, b4000) -> transcriptional dual regulator HU-α (HU-2) EG10467 (hupB, b0440) -> transcriptional dual regulator HU-β, NS1 (HU-1) |
| Group 689 | Candidate 0805 | 0.999 | 0 | 0.500 | 4 | Genes in candidate EG12363 (ygiL, b3043) -> predicted fimbrial-like adhesin protein G6387 (ybgQ, b0718) -> predicted outer membrane usher protein G7585 (yqiG, b3046) -> putative membrane protein G7586 (yqiH, b3047) -> putative membrane protein |
| Group 690 | Genes common to all candidates in group EG11031 (trxA, b3781) -> oxidized thioredoxin EG10845 (rho, b3783) -> transcription termination factor Rho monomer; polarity suppressor EG10413 (gpp, b3779) -> Gpp | |||||
| Candidate 1008 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10844 (rhlB, b3780) -> RhlB | |
| Candidate 1086 | 0.999 | 0 | 1.000 | 4 | Additional genes in candidate EG10170 (cyaA, b3806) -> adenylate cyclase |
| Group 691 | Candidate 0960 | 0.999 | 1 | 0.500 | 4 | Genes in candidate EG10590 (metL, b3940) -> MetL EG10998 (thrA, b0002) -> ThrA EG10999 (thrB, b0003) -> ThrB EG11000 (thrC, b0004) -> threonine synthase |
| Group 692 | Candidate 1085 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10185 (cysC, b2750) -> CysC EG10188 (cysG, b3368) -> CysG EG10189 (cysH, b2762) -> CysH EG10190 (cysI, b2763) -> sulfite reductase, hemoprotein subunit |
| Group 693 | Candidate 1057 | 0.999 | 0 | 1.000 | 4 | Genes in candidate EG10258 (eno, b2779) -> Eno EG10572 (mazG, b2781) -> nucleoside triphosphate pyrophosphohydrolase EG10810 (pyrG, b2780) -> PyrG EG10835 (relA, b2784) -> GDP pyrophosphokinase / GTP pyrophosphokinase |